Add jekyll-scholar BibTeX pipeline for publications

Replaces static HTML pub list with jekyll-scholar reading from
_bibliography/cisneros.bib. Adds GitHub Actions workflow for full
Jekyll build and deployment.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>

Author: ecisneros8

.github/workflows/deploy.yml

@@ -0,0 +1,45 @@
+name: Build and Deploy
+
+on:
+  push:
+    branches: [main]
+  workflow_dispatch:
+
+permissions:
+  contents: read
+  pages: write
+  id-token: write
+
+concurrency:
+  group: "pages"
+  cancel-in-progress: false
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: ruby/setup-ruby@v1
+        with:
+          ruby-version: "3.3"
+          bundler-cache: true
+
+      - name: Build Jekyll
+        run: bundle exec jekyll build
+        env:
+          JEKYLL_ENV: production
+
+      - name: Upload artifact
+        uses: actions/upload-pages-artifact@v3
+
+  deploy:
+    environment:
+      name: github-pages
+      url: ${{ steps.deployment.outputs.page_url }}
+    runs-on: ubuntu-latest
+    needs: build
+    steps:
+      - name: Deploy to GitHub Pages
+        id: deployment
+        uses: actions/deploy-pages@v4

Gemfile

@@ -0,0 +1,6 @@
+source "https://rubygems.org"
+
+gem "jekyll", "~> 4.3"
+gem "jekyll-scholar"
+gem "jekyll-seo-tag"
+gem "webrick"

_bibliography/cisneros.bib

@@ -0,0 +1,57 @@
+@article{ref:Cisneros2024,
+   author = {Esteban Cisneros–Garibay and Michael E. Mueller},
+   doi = {10.2514/1.J063072},
+   issn = {0001-1452},
+   issue = {2},
+   journal = {AIAA Journal},
+   month = {2},
+   pages = {590-601},
+   title = {Consistent Coupling of Compressibility Effects in Manifold-Based Models for Supersonic Combustion},
+   volume = {62},
+   year = {2024}
+}
+@article{ref:Cisneros2022,
+   author = {Esteban Cisneros-Garibay and Carlos Pantano and Jonathan B. Freund},
+   doi = {10.2514/1.J061533},
+   issn = {0001-1452},
+   issue = {8},
+   journal = {AIAA Journal},
+   month = {8},
+   pages = {4566-4577},
+   title = {Flow and Combustion in a Supersonic Cavity Flameholder},
+   volume = {60},
+   year = {2022}
+}
+@article{Cisneros-Garibay2019,
+   author = {Esteban Cisneros-Garibay and Carlos Pantano and Jonathan B. Freund},
+   doi = {10.1016/j.combustflame.2019.06.028},
+   issn = {00102180},
+   journal = {Combustion and Flame},
+   month = {10},
+   pages = {219-234},
+   title = {Accounting for uncertainty in RCCE species selection},
+   volume = {208},
+   year = {2019}
+}
+@article{CisnerosGaribay2026,
+   author = {Esteban Cisneros–Garibay and Henry Le Berre and Dimitrios Adam and Spencer H. Bryngelson and Jonathan B. Freund},
+   doi = {10.1016/j.cpc.2025.109987},
+   issn = {00104655},
+   journal = {Computer Physics Communications},
+   month = {3},
+   pages = {109987},
+   title = {Pyrometheus: Symbolic abstractions for XPU and automatically differentiated computation of combustion kinetics and thermodynamics},
+   volume = {320},
+   year = {2026}
+}
+@article{Wilfong2026,
+   author = {Benjamin Wilfong and Henry A. Le Berre and Anand Radhakrishnan and Ansh Gupta and Daniel J. Vickers and Diego Vaca-Revelo and Dimitrios Adam and Haocheng Yu and Hyeoksu Lee and Jose Rodolfo Chreim and Mirelys Carcana Barbosa and Yanjun Zhang and Esteban Cisneros-Garibay and Aswin Gnanaskandan and Mauro Rodriguez Jr and Reuben D. Budiardja and Stephen Abbott and Tim Colonius and Spencer H. Bryngelson},
+   doi = {10.1016/j.cpc.2026.110055},
+   issn = {00104655},
+   journal = {Computer Physics Communications},
+   month = {5},
+   pages = {110055},
+   title = {MFC 5.0: An exascale many-physics flow solver},
+   volume = {322},
+   year = {2026}
+}

_config.yml

@@ -5,6 +5,14 @@ permalink: pretty
 
 plugins:
   - jekyll-seo-tag
+  - jekyll-scholar
+
+scholar:
+  style: apa
+  bibliography: cisneros.bib
+  bibliography_template: bib
+  sort_by: year
+  order: descending
 
 # ─── Hero section ──────────────────────────────────────────────────────────────
 # By default the homepage shows an animated turbulent-flow simulation.

_layouts/bib.html

@@ -0,0 +1 @@
+<li class="pub-item">{{ reference }}</li>

assets/css/custom.css

@@ -266,14 +266,16 @@ li { margin-bottom: 0.3rem; }
 .apply-box h3 { color: #1d4ed8; margin-bottom: 0.75rem; }
 
 /* ── Publications ─────────────────────────────────────────── */
-.pub-list {
+.pub-list,
+ol.bibliography {
   list-style: none;
   margin-left: 0;
   display: flex;
   flex-direction: column;
   gap: 1.1rem;
   margin-top: 1.1rem;
 }
+ol.bibliography { padding-left: 0; }
 .pub-item {
   padding: 1.1rem 1.4rem;
   background: #f8fafc;

research.md

@@ -25,41 +25,7 @@ title: Research
   <div class="section-label">Peer-Reviewed Articles</div>
   <h2>Publications</h2>
 
-  <ul class="pub-list">
-
-    <li class="pub-item">
-      <div class="pub-title">
-        <a href="https://doi.org/PLACEHOLDER" target="_blank" rel="noopener">
-          [Paper title — replace with full title]
-        </a>
-      </div>
-      <div class="pub-authors">E. Cisneros, [Co-author A], [Co-author B]</div>
-      <div class="pub-journal"><em>[Journal Name]</em>, vol. XX, pp. XXX–XXX, 2025.</div>
-    </li>
-
-    <li class="pub-item">
-      <div class="pub-title">
-        <a href="https://doi.org/PLACEHOLDER" target="_blank" rel="noopener">
-          [Paper title — replace with full title]
-        </a>
-      </div>
-      <div class="pub-authors">E. Cisneros, [Co-author]</div>
-      <div class="pub-journal"><em>[Conference or Journal]</em>, 2024.</div>
-    </li>
-
-    <li class="pub-item">
-      <div class="pub-title">
-        <a href="https://doi.org/PLACEHOLDER" target="_blank" rel="noopener">
-          [Paper title — replace with full title]
-        </a>
-      </div>
-      <div class="pub-authors">[Co-author], E. Cisneros, [Co-author]</div>
-      <div class="pub-journal"><em>[Journal Name]</em>, vol. XX, pp. XXX–XXX, 2023.</div>
-    </li>
-
-    <!-- Add more entries above this comment, following the same pattern -->
-
-  </ul>
+  {% bibliography %}
 </section>
 
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