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networkR

Development version of the R package networkR. This package contains a collection of various semi-useful functions for network af family analysis.

To install the development version of networkR run the following command from within R (this requires that the devtools package is already installed on the system.)

devtools::install_github('ekstroem/networkR')

(CRAN checks : Travis-CI Build Status)

Package overview

Families

  • cluster_families will identify clusters (families) based on information of ids, father ids and mother ids.

Network analysis

  • adjacency
  • hits

Formats

The linkage format for family data ...

The trio format that we use in this package is a reduced/restricted version of the linkage format consisting of three integer (numeric) values for each individual:

  • id - the id of the individual,
  • fid - the id of the father,
  • mid - the id of the mother.

For the fid and mid variables a 0 or NA represents no information, and a person with nor information on father and mother id is considered a founder. For consistency, an individual should not have just a single parent missing.

Note that since we do not have a family indicator all id's should be uniques across all families.