Added all notebooks to examples index in docs

Author: avmarchenko

docs/source/index.rst

@@ -31,7 +31,10 @@ method to get started with visualization is through the `Jupyter notebook`_.
     :maxdepth: 2
     :caption: Examples
 
-    notebooks/water-demo.ipynb
+    notebooks/00_index.ipynb
+    notebooks/01_basics.ipynb
+    notebooks/02_xyz.ipynb
+    notebooks/03_orbitals.ipynb
     notebooks/nwchem.ipynb
     notebooks/qe.ipynb
 

docs/source/notebooks/00_index.ipynb

@@ -18,7 +18,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "## [Basics of exatomic](01_basics.ipynb)\n",
+    "## [Basics of exatomic](./01_basics.ipynb)\n",
     "\n",
     "- Tutorial of basic usage and syntax\n",
     "- Demonstrates how to load/manipulate dataframe data"
@@ -28,7 +28,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "## [XYZ Tutorial](02_xyz.ipynb)\n",
+    "## [XYZ Tutorial](./02_xyz.ipynb)\n",
     "\n",
     "- Load an XYZ trajectory\n",
     "- Visualize the structure\n",
@@ -39,7 +39,7 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "## [Visualization of Molecular Orbitals](03_orbitals.ipynb)\n",
+    "## [Visualization of Molecular Orbitals](./03_orbitals.ipynb)\n",
     "\n",
     "- Tutorial on parsing data from wave function theory software\n",
     "- Visualization of molecular orbitals\n",
@@ -50,17 +50,24 @@
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "# [NWChem](nwchem.ipynb)\n",
+    "# [NWChem](./nwchem.ipynb)\n",
     "- [NWChem](https://github.com/nwchemgit/nwchem/wiki) is a computational chemistry software"
    ]
   },
   {
    "cell_type": "markdown",
    "metadata": {},
    "source": [
-    "# [QE](qe.ipynb)\n",
+    "# [QE](./qe.ipynb)\n",
     "- [QE](https://www.quantum-espresso.org/) is primarily a solid state physics simulation software"
    ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
   }
  ],
  "metadata": {