Fixup synth imports

Author: cboulay

pyproject.toml

@@ -26,6 +26,7 @@ lint = [
     "ruff>=0.12.9",
 ]
 test = [
+    "ezmsg-simbiophys>=1.0.0",
     "hmmlearn>=0.3.3",
     "pytest>=8.4.1",
 ]

tests/integration/test_mlp_system.py

@@ -3,7 +3,7 @@
 from pathlib import Path
 
 import ezmsg.core as ez
-from ezmsg.sigproc.synth import Counter, CounterSettings
+from ezmsg.simbiophys.counter import Counter, CounterSettings
 from ezmsg.util.messagecodec import message_log
 from ezmsg.util.messagelogger import MessageLogger, MessageLoggerSettings
 from ezmsg.util.messages.axisarray import AxisArray
@@ -44,9 +44,7 @@ def test_torch_model_unit_system():
             device="cpu",
         ),
         "LOG": MessageLogger(MessageLoggerSettings(output=test_filename)),
-        "TERM": TerminateOnTotal(
-            TerminateOnTotalSettings(total=int(duration * fs / block_size))
-        ),
+        "TERM": TerminateOnTotal(TerminateOnTotalSettings(total=int(duration * fs / block_size))),
     }
 
     conns = (

tests/integration/test_refit_kalman_system.py

@@ -5,7 +5,7 @@
 
 import ezmsg.core as ez
 import numpy as np
-from ezmsg.sigproc.synth import Counter, CounterSettings
+from ezmsg.simbiophys.counter import Counter, CounterSettings
 from ezmsg.util.messagecodec import message_log
 from ezmsg.util.messagelogger import MessageLogger, MessageLoggerSettings
 from ezmsg.util.messages.axisarray import AxisArray

tests/integration/test_rnn_system.py

@@ -3,7 +3,7 @@
 from pathlib import Path
 
 import ezmsg.core as ez
-from ezmsg.sigproc.synth import Counter, CounterSettings
+from ezmsg.simbiophys.counter import Counter, CounterSettings
 from ezmsg.util.messagecodec import message_log
 from ezmsg.util.messagelogger import MessageLogger, MessageLoggerSettings
 from ezmsg.util.messages.axisarray import AxisArray
@@ -51,9 +51,7 @@ def test_torch_model_unit_system():
             },
         ),
         "LOG": MessageLogger(MessageLoggerSettings(output=test_filename)),
-        "TERM": TerminateOnTotal(
-            TerminateOnTotalSettings(total=int(duration * fs / block_size))
-        ),
+        "TERM": TerminateOnTotal(TerminateOnTotalSettings(total=int(duration * fs / block_size))),
     }
 
     conns = (

tests/integration/test_sklearn_system.py

@@ -6,7 +6,7 @@
 import ezmsg.core as ez
 import numpy as np
 import pandas as pd
-from ezmsg.sigproc.synth import Counter
+from ezmsg.simbiophys.counter import Counter
 from ezmsg.util.messagecodec import message_log
 from ezmsg.util.messagelogger import MessageLogger
 from ezmsg.util.messages.axisarray import AxisArray

tests/integration/test_torch_system.py

@@ -3,7 +3,7 @@
 from pathlib import Path
 
 import ezmsg.core as ez
-from ezmsg.sigproc.synth import Counter, CounterSettings
+from ezmsg.simbiophys.counter import Counter, CounterSettings
 from ezmsg.util.messagecodec import message_log
 from ezmsg.util.messagelogger import MessageLogger, MessageLoggerSettings
 from ezmsg.util.messages.axisarray import AxisArray
@@ -44,9 +44,7 @@ def test_torch_model_unit_system():
             device="cpu",
         ),
         "LOG": MessageLogger(MessageLoggerSettings(output=test_filename)),
-        "TERM": TerminateOnTotal(
-            TerminateOnTotalSettings(total=int(duration * fs / block_size))
-        ),
+        "TERM": TerminateOnTotal(TerminateOnTotalSettings(total=int(duration * fs / block_size))),
     }
 
     conns = (

tests/integration/test_transformer_system.py

@@ -3,7 +3,7 @@
 from pathlib import Path
 
 import ezmsg.core as ez
-from ezmsg.sigproc.synth import Counter, CounterSettings
+from ezmsg.simbiophys.counter import Counter, CounterSettings
 from ezmsg.util.messagecodec import message_log
 from ezmsg.util.messagelogger import MessageLogger, MessageLoggerSettings
 from ezmsg.util.messages.axisarray import AxisArray
@@ -53,9 +53,7 @@ def test_torch_model_unit_system():
             },
         ),
         "LOG": MessageLogger(MessageLoggerSettings(output=test_filename)),
-        "TERM": TerminateOnTotal(
-            TerminateOnTotalSettings(total=int(duration * fs / block_size))
-        ),
+        "TERM": TerminateOnTotal(TerminateOnTotalSettings(total=int(duration * fs / block_size))),
     }
 
     conns = (