|
| 1 | +import os |
| 2 | +import numpy as np |
| 3 | +import importlib.util |
| 4 | +from brainplotlib import brain_plot |
| 5 | + |
| 6 | + |
| 7 | +class TestSurfaceTypes: |
| 8 | + def test_inflated_surface(self, tmp_path): |
| 9 | + rng = np.random.default_rng() |
| 10 | + values = rng.random((588, )), rng.random((587, )) |
| 11 | + img, scale = brain_plot(*values, vmax=1, vmin=0, cmap='viridis', return_scale=True, surf_type='inflated') |
| 12 | + from matplotlib import cm |
| 13 | + assert isinstance(scale, cm.ScalarMappable) |
| 14 | + assert img.shape in [(1560, 1728, 4), (1560, 1728, 3)] |
| 15 | + assert img.dtype == np.float64 |
| 16 | + assert np.all(img <= 1) |
| 17 | + assert np.all(img >= 0) |
| 18 | + if importlib.util.find_spec('cv2'): |
| 19 | + import cv2 |
| 20 | + cv2.imwrite(os.path.join(tmp_path, 'test_inflated.png'), np.round(img * 255).astype(np.uint8)[:, :, [2, 1, 0, 3]]) |
| 21 | + |
| 22 | + def test_pial_surface(self, tmp_path): |
| 23 | + rng = np.random.default_rng() |
| 24 | + values = rng.random((588, )), rng.random((587, )) |
| 25 | + img, scale = brain_plot(*values, vmax=1, vmin=0, cmap='viridis', return_scale=True, surf_type='pial') |
| 26 | + from matplotlib import cm |
| 27 | + assert isinstance(scale, cm.ScalarMappable) |
| 28 | + assert img.shape in [(1560, 1728, 4), (1560, 1728, 3)] |
| 29 | + assert img.dtype == np.float64 |
| 30 | + assert np.all(img <= 1) |
| 31 | + assert np.all(img >= 0) |
| 32 | + if importlib.util.find_spec('cv2'): |
| 33 | + import cv2 |
| 34 | + cv2.imwrite(os.path.join(tmp_path, 'test_pial.png'), np.round(img * 255).astype(np.uint8)[:, :, [2, 1, 0, 3]]) |
| 35 | + |
| 36 | + def test_midthickness_surface(self, tmp_path): |
| 37 | + rng = np.random.default_rng() |
| 38 | + values = rng.random((588, )), rng.random((587, )) |
| 39 | + img, scale = brain_plot(*values, vmax=1, vmin=0, cmap='viridis', return_scale=True, surf_type='midthickness') |
| 40 | + from matplotlib import cm |
| 41 | + assert isinstance(scale, cm.ScalarMappable) |
| 42 | + assert img.shape in [(1560, 1728, 4), (1560, 1728, 3)] |
| 43 | + assert img.dtype == np.float64 |
| 44 | + assert np.all(img <= 1) |
| 45 | + assert np.all(img >= 0) |
| 46 | + if importlib.util.find_spec('cv2'): |
| 47 | + import cv2 |
| 48 | + cv2.imwrite(os.path.join(tmp_path, 'test_midthickness.png'), np.round(img * 255).astype(np.uint8)[:, :, [2, 1, 0, 3]]) |
| 49 | + |
| 50 | + def test_white_surface(self, tmp_path): |
| 51 | + rng = np.random.default_rng() |
| 52 | + values = rng.random((588, )), rng.random((587, )) |
| 53 | + img, scale = brain_plot(*values, vmax=1, vmin=0, cmap='viridis', return_scale=True, surf_type='white') |
| 54 | + from matplotlib import cm |
| 55 | + assert isinstance(scale, cm.ScalarMappable) |
| 56 | + assert img.shape in [(1560, 1728, 4), (1560, 1728, 3)] |
| 57 | + assert img.dtype == np.float64 |
| 58 | + assert np.all(img <= 1) |
| 59 | + assert np.all(img >= 0) |
| 60 | + if importlib.util.find_spec('cv2'): |
| 61 | + import cv2 |
| 62 | + cv2.imwrite(os.path.join(tmp_path, 'test_white.png'), np.round(img * 255).astype(np.uint8)[:, :, [2, 1, 0, 3]]) |
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