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🔄 Synced local '.github/workflows/' with remote '.github/workflows/'
release-2.1.0
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Lines changed: 307 additions & 91 deletions

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‎.github/workflows/check-url.yml‎

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name: Periodic URL Check
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on:
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workflow_dispatch:
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schedule:
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- cron: '0 0 1 * *'
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jobs:
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set-up:
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name: Load user automation choices
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runs-on: ubuntu-latest
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steps:
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- name: Checkout
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uses: actions/checkout@v3
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with:
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fetch-depth: 0
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# Use the yaml-env-action action.
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- name: Load environment from YAML
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uses: doughepi/yaml-env-action@v1.0.0
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with:
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files: config_automation.yml # Pass a space-separated list of configuration files. Rightmost files take precedence.
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outputs:
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toggle_url_check_periodically: "${{ env.URL_CHECK_PERIODICALLY }}"
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url-check:
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name: Check URLs
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needs: set-up
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if: ${{needs.set-up.outputs.toggle_url_check_periodically == 'yes'}}
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runs-on: ubuntu-latest
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container:
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image: jhudsl/base_ottr:main
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steps:
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- name: Checkout
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uses: actions/checkout@v3
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with:
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fetch-depth: 0
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# Delete the branch if this has been run before
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- name: Delete branch locally and remotely
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run: git push origin --delete preview-spell-error || echo "No branch to delete"
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# Make the branch fresh
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- name: Make the branch fresh
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run: |
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git config --global --add safe.directory $GITHUB_WORKSPACE
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git config --global user.name 'github-actions[bot]'
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git config --global user.email 'github-actions[bot]@users.noreply.github.com'
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echo branch doesnt exist
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git checkout -b preview-spell-error || echo branch exists
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git push --set-upstream origin preview-spell-error || echo echo branch exists remotely
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shell: bash
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- name: Run the check
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uses: jhudsl/ottr-reports@main
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id: check_results
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continue-on-error: true
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with:
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check_type: urls
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error_min: 1
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- name: Declare file path and time
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id: check-report
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run: |
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error_num=$(cat check_reports/url_checks.tsv | wc -l)
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error_num="$((error_num-1))"
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echo "error_num=$error_num" >> $GITHUB_OUTPUT
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echo "error_url=https://github.com/${GITHUB_REPOSITORY}/blob/preview-spell-error/check_reports/url_checks.tsv" >> $GITHUB_OUTPUT
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shell: bash
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- name: Stop if failure
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if: steps.check_results.outcome == 'failure'
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run: exit 1
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- name: Print out error variables
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run: |
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echo ${{ steps.check-report.outputs.error_url }}
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echo ${{ steps.check-report.outputs.error_num }}
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# Commit file
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- name: Commit tocless bookdown files
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if: ${{ steps.check-report.outputs.error_num >= 1 }}
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env:
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GH_PAT: ${{ secrets.GH_PAT }}
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run: |
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git add --force check_reports/url_checks.tsv
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git commit -m 'Add spell check file' || echo "No changes to commit"
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git push --set-upstream origin preview-spell-error || echo echo branch exists remotely
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- name: Find issues
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id: find-issue
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env:
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GH_PAT: ${{ secrets.GH_PAT }}
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run: |
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echo "$GITHUB_REPOSITORY"
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curl -o find_issue.R https://raw.githubusercontent.com/jhudsl/ottr-reports/main/scripts/find_issue.R
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issue_exists=$(Rscript --vanilla find_issue.R --repo $GITHUB_REPOSITORY --git_pat $GH_PAT)
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echo URL issue exists: $issue_exists
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echo "issue_existence=$issue_exists" >> $GITHUB_OUTPUT
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- name: If too many URL errors, then make an issue
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if: ${{ steps.check-report.outputs.error_num >= 1 && steps.find-issue.outputs.issue_existence == 0}}
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uses: JasonEtco/create-an-issue@v2
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with:
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filename: .github/ISSUE_TEMPLATE/url-error.md
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env:
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GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
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FILE_URL: ${{ steps.check-report.outputs.error_url }}
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ERROR_NUM: ${{ steps.check-report.outputs.error_num }}
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- name: If no URL errors than delete the branch we made
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if: ${{ steps.check-report.outputs.error_num < 1 }}
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run: |
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git config --system --add safe.directory "$GITHUB_WORKSPACE"
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git push origin --delete preview-spell-error || echo "No branch to delete"

‎.github/workflows/delete-preview.yml‎

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# Check out current repository
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- name: checkout
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uses: actions/checkout@v3
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uses: actions/checkout@v4
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with:
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fetch-depth: 0
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‎.github/workflows/pull_request.yml‎

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# Candace Savonen 2021
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# Updated Jan 2023
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# Updated May 2024
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name: Pull Request
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runs-on: ubuntu-latest
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steps:
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- name: Checkout
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uses: actions/checkout@v3
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uses: actions/checkout@v4
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with:
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fetch-depth: 0
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# Make the branch fresh
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- name: Make the branch fresh
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run: |
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git config --local user.email "itcrtrainingnetwork@gmail.com"
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git config --local user.name "jhudsl-robot"
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git config --global --add safe.directory $GITHUB_WORKSPACE
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git config --global user.name 'github-actions[bot]'
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git config --global user.email 'github-actions[bot]@users.noreply.github.com'
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branch_name='preview-${{ github.event.pull_request.number }}'
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echo branch doesnt exist
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git checkout -b $branch_name || echo branch exists
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git push --set-upstream origin $branch_name
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git push --set-upstream origin $branch_name || echo branch exists remotely
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shell: bash
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outputs:
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toggle_website: "${{ env.RENDER_WEBSITE }}"
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toggle_spell_check: "${{ env.SPELL_CHECK }}"
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toggle_style_code: "${{ env.STYLE_CODE }}"
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toggle_url_check: "${{ env.URL_CHECKER }}"
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toggle_quiz_check: "${{ env.CHECK_QUIZZES }}"
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toggle_md_linter: "${{ env.MARKDOWN_LINTER }}"
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toggle_readability: "${{ env.READABILITY_REPORT }}"
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toggle_render_preview: "${{ env.RENDER_PREVIEW }}"
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rendering_docker_image: "${{ env.RENDERING_DOCKER_IMAGE }}"
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with:
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check_type: spelling
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error_min: 3
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gh_pat: secrets.GH_PAT
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branch_name: ${GITHUB_HEAD_REF}
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secrets:
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gh_pat: ${{ secrets.GH_PAT }}
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url-check:
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name: Check URLs
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with:
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check_type: urls
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error_min: 0
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gh_pat: secrets.GH_PAT
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branch_name: ${GITHUB_HEAD_REF}
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secrets:
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gh_pat: ${{ secrets.GH_PAT }}
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quiz-check:
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name: Check quiz formatting
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with:
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check_type: quiz_format
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error_min: 0
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gh_pat: secrets.GH_PAT
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branch_name: ${GITHUB_HEAD_REF}
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secrets:
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gh_pat: ${{ secrets.GH_PAT }}
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############################# Style the code ###################################
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style-code:
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steps:
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- name: Checkout files
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uses: actions/checkout@v3
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uses: actions/checkout@v4
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with:
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fetch-depth: 0
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- name: Run styler
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run: Rscript -e "styler::style_file(list.files(pattern = 'Rmd$', recursive = TRUE, full.names = TRUE));warnings()"
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run: Rscript -e "styler::style_file(list.files(pattern = '(R|q)md$', recursive = FALSE, full.names = TRUE));warnings()"
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- name: Commit styled files
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run: |
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git config --system --add safe.directory "$GITHUB_WORKSPACE"
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git add \*.Rmd
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git commit -m 'Style Rmds' || echo "No changes to commit"
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git add \*md
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git commit -m 'Style *mds' || echo "No changes to commit"
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git push origin || echo "No changes to commit"
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############################# Readability Report ###################################
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readability-report:
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name: Readability report
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needs: yaml-check
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runs-on: ubuntu-latest
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if: ${{needs.yaml-check.outputs.toggle_readability == 'yes'}}
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steps:
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- name: Checkout repo
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uses: actions/checkout@v4
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with:
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fetch-depth: 0
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- name: Readability report
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uses: Rebilly/lexi@v2
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with:
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github-token: ${{ secrets.GH_PAT }}
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glob: '**/*.md'
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############################# Render Preview ###################################
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render-preview:
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steps:
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- name: Checkout files
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uses: actions/checkout@v3
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uses: actions/checkout@v4
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with:
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fetch-depth: 0
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# Set up git checkout
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- name: Set up git checkout
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run: |
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git config --system --add safe.directory "$GITHUB_WORKSPACE"
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git config --local user.email "itcrtrainingnetwork@gmail.com"
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git config --local user.name "jhudsl-robot"
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git config --global --add safe.directory $GITHUB_WORKSPACE
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git config --global user.name 'github-actions[bot]'
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git config --global user.email 'github-actions[bot]@users.noreply.github.com'
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branch_name='preview-${{ github.event.pull_request.number }}'
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git fetch --all
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# Run bookdown rendering
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- name: Run bookdown render
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id: bookdown
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if: ${{needs.yaml-check.outputs.toggle_website == 'rmd' }}
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run: Rscript -e "bookdown::render_book('index.Rmd', output_format = 'all')"
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# Run TOC-less version
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# Rendered content for Leanpub and Coursera is very similar.
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# This job creates a shared scaffold for both.
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- name: Run TOC-less version of render
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id: tocless
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run: Rscript -e "ottrpal::render_without_toc()"
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# Run quarto rendering
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- name: Render quarto version
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id: quarto
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if: ${{needs.yaml-check.outputs.toggle_website == 'quarto' }}
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run: Rscript -e "quarto::quarto_render('.')"
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# This checks on the steps before it and makes sure that they completed.
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# If the renders didn't complete we don't want to commit the file changes
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- name: Check on render steps
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if: steps.bookdown.outcome != 'success' || steps.tocless.outcome != 'success'
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- name: Check on Rmd render steps
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if: ${{needs.yaml-check.outputs.toggle_website == 'rmd' }}
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run: |
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echo Bookdown status ${{steps.bookdown.outcome}}
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echo Toc-less status ${{steps.tocless.outcome}}
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exit 1
185+
if [${{steps.bookdown.outcome}} != 'success']; then
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exit 1
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fi
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- name: Check on quarto render steps
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if: ${{needs.yaml-check.outputs.toggle_website == 'quarto' }}
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run: |
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echo Quarto status ${{steps.quarto.outcome}}
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if [${{steps.quarto.outcome}} != 'success']; then
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exit 1
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fi
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- name: Website preview for download
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run: zip website-preview.zip docs/* -r
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# Commit the rendered bookdown files
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- name: Commit rendered bookdown files to preview branch
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echo "changes=$changes" >> $GITHUB_OUTPUT
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git add . --force
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git commit -m 'Render preview' || echo "No changes to commit"
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git pull --set-upstream origin $branch_name --allow-unrelated-histories --strategy-option=ours
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git pull --rebase --set-upstream origin $branch_name --allow-unrelated-histories --strategy-option=ours
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git push --force || echo "No changes to commit"
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shell: bash
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run: |
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course_name=$(head -n 1 _bookdown.yml | cut -d'"' -f 2| tr " " "-")
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bookdown_link=$(echo "https://htmlpreview.github.io/?https://raw.githubusercontent.com/$GITHUB_REPOSITORY/preview-${{ github.event.pull_request.number }}/docs/index.html")
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tocless_link=$(echo "https://htmlpreview.github.io/?https://raw.githubusercontent.com/$GITHUB_REPOSITORY/preview-${{ github.event.pull_request.number }}/docs/no_toc/index.html")
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docx_link=$(echo "https://github.com/$GITHUB_REPOSITORY/raw/preview-${{ github.event.pull_request.number }}/docs/$course_name.docx")
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zip_link=$(echo "https://github.com/$GITHUB_REPOSITORY/raw/preview-${{ github.event.pull_request.number }}/website-preview.zip")
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echo "zip_link=$zip_link" >> $GITHUB_OUTPUT
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echo "bookdown_link=$bookdown_link" >> $GITHUB_OUTPUT
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echo "tocless_link=$tocless_link" >> $GITHUB_OUTPUT
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echo "docx_link=$docx_link" >> $GITHUB_OUTPUT
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echo "time=$(date +'%Y-%m-%d')" >> $GITHUB_OUTPUT
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echo "commit_id=$GITHUB_SHA" >> $GITHUB_OUTPUT
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issue-number: ${{ github.event.pull_request.number }}
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body: |
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Re-rendered previews from the latest commit:
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- See [preview of Bookdown here](${{ steps.build-components.outputs.bookdown_link }})
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- See [preview of Coursera/Leanpub version here](${{ steps.build-components.outputs.tocless_link }})
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- Download the [preview of .docx file](${{ steps.build-components.outputs.docx_link }})
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- :eyes: Quick [preview of course website here](${{ steps.build-components.outputs.bookdown_link }}) \*
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- :microscope: Comprehensive [download of the course website here](${{ steps.build-components.outputs.zip_link }})
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- Download the [.docx file](${{ steps.build-components.outputs.docx_link }})
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204-
_Updated at ${{ steps.build-components.outputs.time }} with changes from ${{ steps.build-components.outputs.commit_id }}_
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\* note not all html features will be properly displayed in the "quick preview" but it will give you a rough idea.
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_Updated at ${{ steps.build-components.outputs.time }} with changes from the latest commit ${{ steps.build-components.outputs.commit_id }}_
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edit-mode: replace
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- name: Comment if no changes

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