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biocypher-ppeo.owl.ttl
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1967 lines (1668 loc) · 99 KB
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@prefix : <http://purl.org/ppeo/PPEO.owl#> .
@prefix dc: <http://purl.org/dc/elements/1.1/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix PPEO: <http://purl.org/ppeo/PPEO.owl#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@base <http://purl.org/ppeo/PPEO.owl> .
<http://purl.org/ppeo/PPEO.owl> rdf:type owl:Ontology ;
dc:creator "Bruno Vasques Costa"^^xsd:string ,
"Cyril Pommier"^^xsd:string ,
"Daniel Faria"^^xsd:string ,
"Evangelia Papoutsoglou"^^xsd:string ,
"Guillaume Cornut"^^xsd:string ,
"Hanna Cwiek-Kupczynska"^^xsd:string ,
"Ines Chaves"^^xsd:string ,
"Manuel Ruiz"^^xsd:string ,
"Marie Angélique Laporte"^^xsd:string ,
"Pascal Neveu"^^xsd:string ,
"Pierre Larmande"^^xsd:string .
#################################################################
# Annotation properties
#################################################################
### http://purl.org/dc/elements/1.1/creator
dc:creator rdf:type owl:AnnotationProperty .
### http://purl.org/ppeo/PPEO.owl#hasBrAPISynonym
PPEO:hasBrAPISynonym rdf:type owl:AnnotationProperty ;
rdfs:label "has BrAPI synonym"@en .
### http://purl.org/ppeo/PPEO.owl#hasExactSynonym
PPEO:hasExactSynonym rdf:type owl:AnnotationProperty ;
rdfs:label "has exact synonym"@en .
### http://purl.org/ppeo/PPEO.owl#hasISASynonym
PPEO:hasISASynonym rdf:type owl:AnnotationProperty ;
rdfs:label "has ISA synonym"@en .
### http://purl.org/ppeo/PPEO.owl#hasMIAPPESynonym
PPEO:hasMIAPPESynonym rdf:type owl:AnnotationProperty ;
rdfs:label "has MIAPPE synonym"@en .
### http://purl.org/ppeo/PPEO.owl#hasOntologyRecommendation
PPEO:hasOntologyRecommendation rdf:type owl:AnnotationProperty ;
rdfs:label "has ontology recommendation"@en .
### http://purl.org/ppeo/PPEO.owl#hasRelatedSynonym
PPEO:hasRelatedSynonym rdf:type owl:AnnotationProperty ;
rdfs:label "has related synonym"@en .
#################################################################
# Object Properties
#################################################################
### http://purl.org/ppeo/PPEO.owl#derivesFrom
PPEO:derivesFrom rdf:type owl:ObjectProperty ;
rdfs:domain PPEO:sample ;
rdfs:range PPEO:observation_unit ;
rdfs:label "derives from"@en .
### http://purl.org/ppeo/PPEO.owl#hasAffiliation
PPEO:hasAffiliation rdf:type owl:ObjectProperty ;
rdfs:domain PPEO:person ;
rdfs:range PPEO:institution ;
rdfs:label "has affiliation"@en .
### http://purl.org/ppeo/PPEO.owl#hasBiologicalMaterial
PPEO:hasBiologicalMaterial rdf:type owl:ObjectProperty ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( PPEO:observation_unit
PPEO:study
)
] ;
rdfs:range PPEO:biological_material ;
rdfs:label "has biological material"@en .
### http://purl.org/ppeo/PPEO.owl#hasContactInstitution
PPEO:hasContactInstitution rdf:type owl:ObjectProperty ;
rdfs:domain PPEO:study ;
rdfs:range PPEO:institution ;
rdfs:label "has contact institution"@en .
### http://purl.org/ppeo/PPEO.owl#hasCountry
PPEO:hasCountry rdf:type owl:ObjectProperty ,
owl:FunctionalProperty ;
rdfs:domain PPEO:location ;
rdfs:range PPEO:country ;
rdfs:label "has country"@en .
### http://purl.org/ppeo/PPEO.owl#hasCountryOfOrigin
PPEO:hasCountryOfOrigin rdf:type owl:ObjectProperty ;
rdfs:domain PPEO:biological_material ;
rdfs:range PPEO:country ;
owl:propertyChainAxiom ( PPEO:hasMaterialSource
PPEO:hasLocation
PPEO:hasCountry
) ;
rdfs:label "has country of origin"@en .
### http://purl.org/ppeo/PPEO.owl#hasDataFile
PPEO:hasDataFile rdf:type owl:ObjectProperty ;
rdfs:domain PPEO:study ;
rdfs:range PPEO:data_file ;
rdfs:label "has data file"@en .
### http://purl.org/ppeo/PPEO.owl#hasEnvironment
PPEO:hasEnvironment rdf:type owl:ObjectProperty ;
rdfs:domain PPEO:study ;
rdfs:range PPEO:environment ;
rdfs:label "has environment"@en .
### http://purl.org/ppeo/PPEO.owl#hasEnvironmentParameter
PPEO:hasEnvironmentParameter rdf:type owl:ObjectProperty ;
rdfs:domain PPEO:environment ;
rdfs:range PPEO:environment_parameter ;
rdfs:label "has environment parameter"@en .
### http://purl.org/ppeo/PPEO.owl#hasEvent
PPEO:hasEvent rdf:type owl:ObjectProperty ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( PPEO:observation_unit
PPEO:study
)
] ;
rdfs:range PPEO:event ;
rdfs:label "has event"@en .
### http://purl.org/ppeo/PPEO.owl#hasExperimentalDesign
PPEO:hasExperimentalDesign rdf:type owl:ObjectProperty ;
rdfs:domain PPEO:study ;
rdfs:range PPEO:experimental_design ;
rdfs:label "has experimental design"@en .
### http://purl.org/ppeo/PPEO.owl#hasFactor
PPEO:hasFactor rdf:type owl:ObjectProperty ;
rdfs:domain PPEO:study ;
rdfs:range PPEO:factor ;
rdfs:label "has factor"@en .
### http://purl.org/ppeo/PPEO.owl#hasFactorValue
PPEO:hasFactorValue rdf:type owl:ObjectProperty ;
rdfs:domain PPEO:observation_unit ;
rdfs:range PPEO:factor_value ;
rdfs:label "has factor value"@en .
### http://purl.org/ppeo/PPEO.owl#hasGrowthFacility
PPEO:hasGrowthFacility rdf:type owl:ObjectProperty ;
rdfs:domain PPEO:study ;
rdfs:range PPEO:growth_facility ;
rdfs:label "has growth facility"@en .
### http://purl.org/ppeo/PPEO.owl#hasLocation
PPEO:hasLocation rdf:type owl:ObjectProperty ;
rdfs:range PPEO:location ;
rdfs:label "has location"@en .
### http://purl.org/ppeo/PPEO.owl#hasMaterialSource
PPEO:hasMaterialSource rdf:type owl:ObjectProperty ;
rdfs:domain PPEO:biological_material ;
rdfs:range PPEO:material_source ;
rdfs:label "has material source"@en .
### http://purl.org/ppeo/PPEO.owl#hasMethod
PPEO:hasMethod rdf:type owl:ObjectProperty ;
rdfs:domain PPEO:observed_variable ;
rdfs:range PPEO:method ;
rdfs:label "has method"@en .
### http://purl.org/ppeo/PPEO.owl#hasModality
PPEO:hasModality rdf:type owl:ObjectProperty ;
owl:inverseOf PPEO:isModalityOf ;
rdfs:domain PPEO:factor ;
rdfs:range PPEO:factor_value ;
rdfs:label "has modality"@en .
### http://purl.org/ppeo/PPEO.owl#hasObservation
PPEO:hasObservation rdf:type owl:ObjectProperty ;
rdfs:domain PPEO:data_file ;
rdfs:range PPEO:observation ;
rdfs:label "has observation"@en .
### http://purl.org/ppeo/PPEO.owl#hasObservationLevel
PPEO:hasObservationLevel rdf:type owl:ObjectProperty ;
rdfs:domain PPEO:observation_unit ;
rdfs:range PPEO:observation_level ;
rdfs:label "has observation level"@en .
### http://purl.org/ppeo/PPEO.owl#hasObservationLevelHierarchy
PPEO:hasObservationLevelHierarchy rdf:type owl:ObjectProperty ;
rdfs:domain PPEO:study ;
rdfs:range PPEO:observation_level_hierarchy ;
rdfs:label "has observation level hierarchy"@en .
### http://purl.org/ppeo/PPEO.owl#hasObservedSubject
PPEO:hasObservedSubject rdf:type owl:ObjectProperty ;
owl:inverseOf PPEO:isSubjectOfObservation ;
rdfs:domain PPEO:observation ;
rdfs:range [ rdf:type owl:Class ;
owl:unionOf ( PPEO:observation_unit
PPEO:sample
)
] ;
rdfs:label "has observed subject"@en .
### http://purl.org/ppeo/PPEO.owl#hasPart
PPEO:hasPart rdf:type owl:ObjectProperty ;
owl:inverseOf PPEO:partOf ;
rdf:type owl:TransitiveProperty ;
rdfs:label "has part"@en .
### http://purl.org/ppeo/PPEO.owl#hasParticipatingInstitution
PPEO:hasParticipatingInstitution rdf:type owl:ObjectProperty ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( PPEO:investigation
PPEO:study
)
] ;
rdfs:range PPEO:institution ;
owl:propertyChainAxiom ( PPEO:hasPersonWithRole
PPEO:isRoleOf
PPEO:hasAffiliation
) ;
rdfs:label "has participating institution"@en .
### http://purl.org/ppeo/PPEO.owl#hasPersonWithRole
PPEO:hasPersonWithRole rdf:type owl:ObjectProperty ;
owl:inverseOf PPEO:isRoleOfPersonIn ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( PPEO:investigation
PPEO:study
)
] ;
rdfs:range PPEO:role ;
rdfs:label "has person with role"@en .
### http://purl.org/ppeo/PPEO.owl#hasRole
PPEO:hasRole rdf:type owl:ObjectProperty ;
owl:inverseOf PPEO:isRoleOf ;
rdfs:domain PPEO:person ;
rdfs:range PPEO:role ;
rdfs:label "has role"@en .
### http://purl.org/ppeo/PPEO.owl#hasScale
PPEO:hasScale rdf:type owl:ObjectProperty ;
rdfs:domain PPEO:observed_variable ;
rdfs:range PPEO:scale ;
rdfs:label "has scale"@en .
### http://purl.org/ppeo/PPEO.owl#hasSpatialDistribution
PPEO:hasSpatialDistribution rdf:type owl:ObjectProperty ;
rdfs:domain PPEO:observation_unit ;
rdfs:range PPEO:spatial_distribution ;
rdfs:label "has spatial distribution"@en .
### http://purl.org/ppeo/PPEO.owl#hasSpatialDistributionType
PPEO:hasSpatialDistributionType rdf:type owl:ObjectProperty ;
rdfs:domain PPEO:spatial_distribution ;
rdfs:range PPEO:spatial_distribution_type ;
rdfs:label "has spatial distribution type"@en .
### http://purl.org/ppeo/PPEO.owl#hasSublevel
PPEO:hasSublevel rdf:type owl:ObjectProperty ;
owl:inverseOf PPEO:hasSuperlevel ;
rdf:type owl:IrreflexiveProperty ;
rdfs:domain PPEO:observation_level ;
rdfs:range PPEO:observation_level ;
rdfs:label "has sublevel"@en .
### http://purl.org/ppeo/PPEO.owl#hasSuperlevel
PPEO:hasSuperlevel rdf:type owl:ObjectProperty ,
owl:IrreflexiveProperty ;
rdfs:domain PPEO:observation_level ;
rdfs:range PPEO:observation_level ;
rdfs:label "has superlevel"@en .
### http://purl.org/ppeo/PPEO.owl#hasTrait
PPEO:hasTrait rdf:type owl:ObjectProperty ;
rdfs:domain PPEO:observed_variable ;
rdfs:range PPEO:trait ;
rdfs:label "has trait"@en .
### http://purl.org/ppeo/PPEO.owl#hasVariable
PPEO:hasVariable rdf:type owl:ObjectProperty ;
rdfs:domain PPEO:observation ;
rdfs:range PPEO:observed_variable ;
rdfs:label "has variable"@en .
### http://purl.org/ppeo/PPEO.owl#isModalityOf
PPEO:isModalityOf rdf:type owl:ObjectProperty ;
rdfs:domain PPEO:factor_value ;
rdfs:range PPEO:factor ;
rdfs:label "is modality of"@en .
### http://purl.org/ppeo/PPEO.owl#isRoleOf
PPEO:isRoleOf rdf:type owl:ObjectProperty ;
rdfs:domain PPEO:role ;
rdfs:range PPEO:person ;
rdfs:label "is role of"@en .
### http://purl.org/ppeo/PPEO.owl#isRoleOfPersonIn
PPEO:isRoleOfPersonIn rdf:type owl:ObjectProperty ;
rdfs:domain PPEO:role ;
rdfs:range [ rdf:type owl:Class ;
owl:unionOf ( PPEO:investigation
PPEO:study
)
] ;
rdfs:label "is role of person in"@en .
### http://purl.org/ppeo/PPEO.owl#isSubjectOfObservation
PPEO:isSubjectOfObservation rdf:type owl:ObjectProperty ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( PPEO:observation_unit
PPEO:sample
)
] ;
rdfs:range PPEO:observation ;
rdfs:label "is subject of observation"@en .
### http://purl.org/ppeo/PPEO.owl#partOf
PPEO:partOf rdf:type owl:ObjectProperty ,
owl:TransitiveProperty ;
rdfs:label "part of"@en .
#################################################################
# Data properties
#################################################################
### http://purl.org/ppeo/PPEO.owl#hasAbbreviation
PPEO:hasAbbreviation rdf:type owl:DatatypeProperty ;
rdfs:range xsd:string ;
rdfs:label "has abbreviation"@en .
### http://purl.org/ppeo/PPEO.owl#hasAddress
PPEO:hasAddress rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain PPEO:location ;
rdfs:range xsd:string ;
rdfs:label "has address"@en .
### http://purl.org/ppeo/PPEO.owl#hasAltitude
PPEO:hasAltitude rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain PPEO:location ;
rdfs:range xsd:float ;
rdfs:comment "The altitude of a location in metres"@en ;
rdfs:label "has altitude"@en .
### http://purl.org/ppeo/PPEO.owl#hasAssociatedPublication
PPEO:hasAssociatedPublication rdf:type owl:DatatypeProperty ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( PPEO:investigation
PPEO:method
)
] ;
rdfs:range [ rdf:type rdfs:Datatype ;
owl:unionOf ( xsd:anyURI
xsd:string
)
] ;
rdfs:label "has associated publication"@en .
### http://purl.org/ppeo/PPEO.owl#hasCollectionDate
PPEO:hasCollectionDate rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf PPEO:hasDateTime ;
rdfs:domain PPEO:sample ;
rdfs:range xsd:dateTime ;
rdfs:label "has collection date"@en .
### http://purl.org/ppeo/PPEO.owl#hasCountryCode
PPEO:hasCountryCode rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf PPEO:hasExternalIdentifier ;
rdfs:domain PPEO:country ;
rdfs:range xsd:string ;
rdfs:comment "An ISO 3166-1 country code with either 2 or 3 letters (alpha-2 or alpha-3)."@en ;
rdfs:label "has country code"@en .
### http://purl.org/ppeo/PPEO.owl#hasCulturalPractices
PPEO:hasCulturalPractices rdf:type owl:DatatypeProperty ;
rdfs:domain PPEO:study ;
rdfs:range xsd:string ;
rdfs:label "has cultural practices"@en .
### http://purl.org/ppeo/PPEO.owl#hasDOI
PPEO:hasDOI rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf PPEO:hasExternalIdentifier ;
rdf:type owl:FunctionalProperty ;
rdfs:range [ rdf:type rdfs:Datatype ;
owl:unionOf ( xsd:anyURI
xsd:string
)
] ;
rdfs:comment "An external identifier that is specifically a DOI, given either as just the DOI code (string) or as an URI. The entity <=> DOI relation should be bijective."@en ;
rdfs:label "has DOI"@en .
### http://purl.org/ppeo/PPEO.owl#hasDatabaseId
PPEO:hasDatabaseId rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf PPEO:hasExternalIdentifier ;
rdfs:range [ rdf:type rdfs:Datatype ;
owl:unionOf ( xsd:anyURI
xsd:string
)
] ;
rdfs:comment "An external identifier that is specifically a database identifier."@en ;
rdfs:label "has database identifier"@en .
### http://purl.org/ppeo/PPEO.owl#hasDateTime
PPEO:hasDateTime rdf:type owl:DatatypeProperty ;
rdfs:range xsd:dateTime ;
rdfs:label "has date-time"@en .
### http://purl.org/ppeo/PPEO.owl#hasDescription
PPEO:hasDescription rdf:type owl:DatatypeProperty ;
rdfs:range xsd:string ;
rdfs:label "has description"@en .
### http://purl.org/ppeo/PPEO.owl#hasDigitalLocation
PPEO:hasDigitalLocation rdf:type owl:DatatypeProperty ;
rdfs:domain PPEO:data_file ;
rdfs:range [ rdf:type rdfs:Datatype ;
owl:unionOf ( xsd:anyURI
xsd:string
)
] ;
rdfs:comment "The location of the file in the form of a URI or, if the file is contained within a local MIAPPE submission (e.g. ISA-Tab), a path or file name."@en ;
rdfs:label "has digital location"@en .
### http://purl.org/ppeo/PPEO.owl#hasEmailContact
PPEO:hasEmailContact rdf:type owl:DatatypeProperty ;
rdfs:domain PPEO:person ;
rdfs:range xsd:string ;
rdfs:comment "The e-mail address of a person"@en ;
rdfs:label "has e-mail contact"@en .
### http://purl.org/ppeo/PPEO.owl#hasEndDateTime
PPEO:hasEndDateTime rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf PPEO:hasDateTime ;
rdf:type owl:FunctionalProperty ;
rdfs:range xsd:dateTime ;
rdfs:label "has end date-time"@en .
### http://purl.org/ppeo/PPEO.owl#hasEntryNumber
PPEO:hasEntryNumber rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:range xsd:int ;
rdfs:comment "Used in BrAPI Phenotypes call"@en ;
rdfs:label "has entry number"@en .
### http://purl.org/ppeo/PPEO.owl#hasEntryType
PPEO:hasEntryType rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:range xsd:string ;
rdfs:comment "Used in BrAPI Phenotypes call"@en ;
rdfs:label "has entry type"@en .
### http://purl.org/ppeo/PPEO.owl#hasExperimentalDesignMap
PPEO:hasExperimentalDesignMap rdf:type owl:DatatypeProperty ;
rdfs:domain PPEO:study ;
rdfs:range [ rdf:type rdfs:Datatype ;
owl:unionOf ( xsd:anyURI
xsd:string
)
] ;
rdfs:comment "A map of the experimental design of the study, in gis or excel"@en ;
rdfs:label "has experimental design map"@en .
### http://purl.org/ppeo/PPEO.owl#hasExternalIdentifier
PPEO:hasExternalIdentifier rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf PPEO:hasIdentifier ;
rdfs:range [ rdf:type rdfs:Datatype ;
owl:unionOf ( xsd:anyURI
xsd:string
)
] ;
rdfs:comment "An identifier from another public resource, such as an ontology or database, either in the form of an accession number, or in the form of a URI. An external identifier should be globally unique."@en ;
rdfs:label "has external identifier"@en .
### http://purl.org/ppeo/PPEO.owl#hasGenus
PPEO:hasGenus rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain PPEO:biological_material ;
rdfs:range xsd:string ;
rdfs:label "has genus"@en .
### http://purl.org/ppeo/PPEO.owl#hasGermplasmAccessionNumber
PPEO:hasGermplasmAccessionNumber rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf PPEO:hasExternalIdentifier ,
PPEO:hasMaterialIdentifier ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( PPEO:biological_material
PPEO:material_source
)
] ;
rdfs:range [ rdf:type rdfs:Datatype ;
owl:unionOf ( xsd:anyURI
xsd:string
)
] ;
rdfs:comment "A unique identifier for a germplasm."@en ;
rdfs:label "has germplasm accession number"@en .
### http://purl.org/ppeo/PPEO.owl#hasIdentifier
PPEO:hasIdentifier rdf:type owl:DatatypeProperty ;
rdfs:range [ rdf:type rdfs:Datatype ;
owl:unionOf ( xsd:anyURI
xsd:string
)
] ;
rdfs:label "has identifier"@en .
### http://purl.org/ppeo/PPEO.owl#hasInfraspecificName
PPEO:hasInfraspecificName rdf:type owl:DatatypeProperty ;
rdfs:domain PPEO:biological_material ;
rdfs:range xsd:string ;
rdfs:comment "Name of any subtaxa level, including variety, crossing name, etc. It can be used to store any additional taxonomic identifier. Either free text description or key-value pair list format (the key is the name of the rank and the value is the value of the rank). Ranks can be among the following terms: subspecies, cultivar, variety, subvariety, convariety, group, subgroup, hybrid, line, form, subform. For MCPD compliance, the following abbreviations are allowed: ‘subsp.’ (subspecies); ‘convar.’ (convariety); ‘var.’ (variety); ‘f.’ (form); ‘Group’ (cultivar group)."@en ;
rdfs:label "has infraspecific name"@en .
### http://purl.org/ppeo/PPEO.owl#hasInstituteCode
PPEO:hasInstituteCode rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf PPEO:hasExternalIdentifier ;
rdf:type owl:FunctionalProperty ;
rdfs:domain PPEO:institution ;
rdfs:range xsd:string ;
rdfs:comment "A code or acronym of an institution."@en ;
rdfs:label "has institute code"@en .
### http://purl.org/ppeo/PPEO.owl#hasInternalIdentifier
PPEO:hasInternalIdentifier rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf PPEO:hasIdentifier ;
rdfs:range [ rdf:type rdfs:Datatype ;
owl:unionOf ( xsd:anyURI
xsd:string
)
] ;
rdfs:comment "An identifier used internally, either only in the MIAPPE submission itself, or also on a non-public database whence the information was retrieved. An internal identifier need only be unique among entities of the same type within a MIAPPE submission."@en ;
rdfs:label "has internal identifier"@en .
### http://purl.org/ppeo/PPEO.owl#hasLatitude
PPEO:hasLatitude rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain PPEO:location ;
rdfs:range xsd:float ;
rdfs:comment "The latitude of a location in degrees, in the decimal system"@en ;
rdfs:label "has latitude"@en .
### http://purl.org/ppeo/PPEO.owl#hasLicense
PPEO:hasLicense rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain PPEO:investigation ;
rdfs:range xsd:string ;
rdfs:label "has license"@en .
### http://purl.org/ppeo/PPEO.owl#hasLongitude
PPEO:hasLongitude rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain PPEO:location ;
rdfs:range xsd:float ;
rdfs:comment "The longitude of a location in degrees, in the decimal system"@en ;
rdfs:label "has longitude"@en .
### http://purl.org/ppeo/PPEO.owl#hasMIAPPEVersion
PPEO:hasMIAPPEVersion rdf:type owl:DatatypeProperty ;
rdfs:domain PPEO:investigation ;
rdfs:range xsd:string ;
rdfs:label "has MIAPPE version"@en .
### http://purl.org/ppeo/PPEO.owl#hasMaterialIdentifier
PPEO:hasMaterialIdentifier rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf PPEO:hasIdentifier ;
rdfs:domain [ rdf:type owl:Class ;
owl:unionOf ( PPEO:biological_material
PPEO:material_source
)
] ;
rdfs:range [ rdf:type rdfs:Datatype ;
owl:unionOf ( xsd:anyURI
xsd:string
)
] ;
rdfs:comment "An identifier used specifically for biological materials (and their sources) which can be internal or external. For material sources, it usually follows one of two forms: a key-value pair comprising the name/identifer of the repository from which the material was sourced plus the accession number of the repository for that material, or, where an accession number has not been assigned, but the material has been derived from the crossing of known accessions, \"mother_accession X father_accession\" (father_accession can be \"UNKNOWN\")."@en ;
rdfs:label "has material identifier"@en .
### http://purl.org/ppeo/PPEO.owl#hasName
PPEO:hasName rdf:type owl:DatatypeProperty ;
rdfs:range xsd:string ;
PPEO:hasExactSynonym "has title"@en ;
rdfs:label "has name"@en .
### http://purl.org/ppeo/PPEO.owl#hasObservationUnitDescription
PPEO:hasObservationUnitDescription rdf:type owl:DatatypeProperty ;
rdfs:domain PPEO:study ;
rdfs:range xsd:string ;
rdfs:label "has observation unit description"@en .
### http://purl.org/ppeo/PPEO.owl#hasPlantAnatomicalEntity
PPEO:hasPlantAnatomicalEntity rdf:type owl:DatatypeProperty ;
rdfs:domain PPEO:sample ;
rdfs:range [ rdf:type rdfs:Datatype ;
owl:unionOf ( xsd:anyURI
xsd:string
)
] ;
rdfs:label "has plant anatomical entity"@en .
### http://purl.org/ppeo/PPEO.owl#hasPlantStructureDevelopmentStage
PPEO:hasPlantStructureDevelopmentStage rdf:type owl:DatatypeProperty ;
rdfs:domain PPEO:sample ;
rdfs:range [ rdf:type rdfs:Datatype ;
owl:unionOf ( xsd:anyURI
xsd:string
)
] ;
rdfs:label "has plant structure development stage"@en .
### http://purl.org/ppeo/PPEO.owl#hasPreprocessing
PPEO:hasPreprocessing rdf:type owl:DatatypeProperty ;
rdfs:domain PPEO:biological_material ;
rdfs:range [ rdf:type rdfs:Datatype ;
owl:unionOf ( xsd:anyURI
xsd:string
)
] ;
rdfs:label "has preprocessing"@en .
### http://purl.org/ppeo/PPEO.owl#hasPublicReleaseDate
PPEO:hasPublicReleaseDate rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf PPEO:hasDateTime ;
rdf:type owl:FunctionalProperty ;
rdfs:domain PPEO:investigation ;
rdfs:range xsd:dateTime ;
rdfs:label "has public release date"@en .
### http://purl.org/ppeo/PPEO.owl#hasSeason
PPEO:hasSeason rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain PPEO:observation ;
rdfs:range xsd:string ;
rdfs:label "has season"@en .
### http://purl.org/ppeo/PPEO.owl#hasSpecies
PPEO:hasSpecies rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain PPEO:biological_material ;
rdfs:range xsd:string ;
PPEO:hasExactSynonym "has specific epithet"@en ;
rdfs:label "has species"@en .
### http://purl.org/ppeo/PPEO.owl#hasSpeciesAuthority
PPEO:hasSpeciesAuthority rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain PPEO:biological_material ;
rdfs:range xsd:string ;
rdfs:label "has species authority"@en .
### http://purl.org/ppeo/PPEO.owl#hasStartDateTime
PPEO:hasStartDateTime rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf PPEO:hasDateTime ;
rdf:type owl:FunctionalProperty ;
rdfs:range xsd:dateTime ;
rdfs:label "has start date-time"@en .
### http://purl.org/ppeo/PPEO.owl#hasSubmissionDate
PPEO:hasSubmissionDate rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf PPEO:hasDateTime ;
rdf:type owl:FunctionalProperty ;
rdfs:domain PPEO:investigation ;
rdfs:range xsd:dateTime ;
rdfs:label "has submission date"@en .
### http://purl.org/ppeo/PPEO.owl#hasSubtaxon
PPEO:hasSubtaxon rdf:type owl:DatatypeProperty ;
rdfs:domain PPEO:biological_material ;
rdfs:range xsd:string ;
rdfs:label "has subtaxon"@en .
### http://purl.org/ppeo/PPEO.owl#hasSubtaxonAuthority
PPEO:hasSubtaxonAuthority rdf:type owl:DatatypeProperty ;
rdfs:domain PPEO:biological_material ;
rdfs:range xsd:string ;
rdfs:label "has subtaxon authority"@en .
### http://purl.org/ppeo/PPEO.owl#hasTaxonIdentifier
PPEO:hasTaxonIdentifier rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf PPEO:hasExternalIdentifier ;
rdfs:domain PPEO:biological_material ;
rdfs:range [ rdf:type rdfs:Datatype ;
owl:unionOf ( xsd:anyURI
xsd:string
)
] ;
rdfs:comment "An external identifier for a taxon that is either an NCBI Taxon identifier or an equivalent."@en ;
rdfs:label "has taxon identifier"@en .
### http://purl.org/ppeo/PPEO.owl#hasTimeScale
PPEO:hasTimeScale rdf:type owl:DatatypeProperty ;
rdfs:domain PPEO:observed_variable ;
rdfs:range xsd:string ;
rdfs:label "has time scale"@en .
### http://purl.org/ppeo/PPEO.owl#hasType
PPEO:hasType rdf:type owl:DatatypeProperty ;
rdfs:range [ rdf:type rdfs:Datatype ;
owl:unionOf ( xsd:anyURI
xsd:string
)
] ;
rdfs:label "has type"@en .
### http://purl.org/ppeo/PPEO.owl#hasUncertainty
PPEO:hasUncertainty rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain PPEO:location ;
rdfs:range xsd:float ;
rdfs:label "has uncertainty"@en .
### http://purl.org/ppeo/PPEO.owl#hasValue
PPEO:hasValue rdf:type owl:DatatypeProperty ;
rdfs:label "has value"@en .
### http://purl.org/ppeo/PPEO.owl#hasVersion
PPEO:hasVersion rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:domain PPEO:data_file ;
rdfs:range xsd:string ;
rdfs:label "has version"@en .
### http://purl.org/ppeo/PPEO.owl#isActive
PPEO:isActive rdf:type owl:DatatypeProperty ,
owl:FunctionalProperty ;
rdfs:range xsd:boolean ;
rdfs:label "is active"@en .
#################################################################
# Classes
#################################################################
### http://purl.org/ppeo/PPEO.owl#GPS_location
PPEO:GPS_location rdf:type owl:Class ;
owl:equivalentClass [ owl:intersectionOf ( [ rdf:type owl:Restriction ;
owl:onProperty PPEO:hasLatitude ;
owl:qualifiedCardinality "1"^^xsd:nonNegativeInteger ;
owl:onDataRange xsd:float
]
[ rdf:type owl:Restriction ;
owl:onProperty PPEO:hasLongitude ;
owl:qualifiedCardinality "1"^^xsd:nonNegativeInteger ;
owl:onDataRange xsd:float
]
) ;
rdf:type owl:Class
] ;
rdfs:subClassOf PPEO:location ;
rdfs:label "GPS location"@en .
### http://purl.org/ppeo/PPEO.owl#biologicalConcept
PPEO:biologicalConcept rdf:type owl:Class ;
rdfs:subClassOf PPEO:entity ;
rdfs:label "biological concept"@en .
### http://purl.org/ppeo/PPEO.owl#biological_material
PPEO:biological_material rdf:type owl:Class ;
rdfs:subClassOf PPEO:biologicalConcept ,
[ rdf:type owl:Restriction ;
owl:onProperty PPEO:hasLocation ;
owl:maxQualifiedCardinality "1"^^xsd:nonNegativeInteger ;
owl:onClass PPEO:GPS_location
] ,
[ rdf:type owl:Restriction ;
owl:onProperty PPEO:hasMaterialSource ;
owl:maxQualifiedCardinality "1"^^xsd:nonNegativeInteger ;
owl:onClass PPEO:material_source
] ,
[ rdf:type owl:Restriction ;
owl:onProperty PPEO:hasMaterialIdentifier ;
owl:qualifiedCardinality "1"^^xsd:nonNegativeInteger ;
owl:onDataRange [ rdf:type rdfs:Datatype ;
owl:unionOf ( xsd:anyURI
xsd:string
)
]
] ,
[ rdf:type owl:Restriction ;
owl:onProperty PPEO:hasTaxonIdentifier ;
owl:qualifiedCardinality "1"^^xsd:nonNegativeInteger ;
owl:onDataRange [ rdf:type rdfs:Datatype ;
owl:unionOf ( xsd:anyURI
xsd:string
)
]
] ,
[ rdf:type owl:Restriction ;
owl:onProperty PPEO:hasGenus ;
owl:maxQualifiedCardinality "1"^^xsd:nonNegativeInteger ;
owl:onDataRange xsd:string
] ,
[ rdf:type owl:Restriction ;
owl:onProperty PPEO:hasSpecies ;
owl:maxQualifiedCardinality "1"^^xsd:nonNegativeInteger ;
owl:onDataRange xsd:string
] ;
PPEO:hasBrAPISynonym "germplasm"@en ;
rdfs:comment "An organism that was the subject of the study and/or was observed in an observation unit."@en ;
rdfs:label "biological material"@en .
[ rdf:type owl:Axiom ;
owl:annotatedSource PPEO:biological_material ;
owl:annotatedProperty rdfs:subClassOf ;
owl:annotatedTarget [ rdf:type owl:Restriction ;
owl:onProperty PPEO:hasTaxonIdentifier ;
owl:qualifiedCardinality "1"^^xsd:nonNegativeInteger ;
owl:onDataRange [ rdf:type rdfs:Datatype ;
owl:unionOf ( xsd:anyURI
xsd:string
)
]
] ;
PPEO:hasMIAPPESynonym "organism"@en
] .
### http://purl.org/ppeo/PPEO.owl#country
PPEO:country rdf:type owl:Class ;
rdfs:subClassOf PPEO:technologicalConcept ,
[ rdf:type owl:Restriction ;
owl:onProperty PPEO:hasName ;
owl:someValuesFrom xsd:string
] ;
rdfs:comment "A country in the world that either presently exists (i.e. is recognized in status by most entities) or existed at the time of the study."@en ;
rdfs:label "country"@en .
### http://purl.org/ppeo/PPEO.owl#data_file
PPEO:data_file rdf:type owl:Class ;
rdfs:subClassOf PPEO:technologicalConcept ,
[ rdf:type owl:Restriction ;
owl:onProperty PPEO:hasDescription ;
owl:qualifiedCardinality "1"^^xsd:nonNegativeInteger ;
owl:onDataRange xsd:string
] ,
[ rdf:type owl:Restriction ;
owl:onProperty PPEO:hasDigitalLocation ;
owl:qualifiedCardinality "1"^^xsd:nonNegativeInteger ;
owl:onDataRange [ rdf:type rdfs:Datatype ;
owl:unionOf ( xsd:anyURI
xsd:string
)
]
] ,
[ rdf:type owl:Restriction ;
owl:onProperty PPEO:hasVersion ;
owl:qualifiedCardinality "1"^^xsd:nonNegativeInteger ;
owl:onDataRange xsd:string
] ;
rdfs:comment "A description of and link to a file or data stream holding some or all of the data described by the MIAPPE submission."@en ;
rdfs:label "data file"@en .
### http://purl.org/ppeo/PPEO.owl#entity
PPEO:entity rdf:type owl:Class ;
rdfs:label "entity"@en .
### http://purl.org/ppeo/PPEO.owl#environment
PPEO:environment rdf:type owl:Class ;
rdfs:subClassOf PPEO:technologicalConcept ,
[ rdf:type owl:Restriction ;
owl:onProperty PPEO:hasEnvironmentParameter ;
owl:someValuesFrom PPEO:environment_parameter
] ;
rdfs:comment "The set of environmental parameters or experimental conditions that were kept constant during the study and did not change betweeen observation units or assays."@en ;
rdfs:label "environment"@en .
### http://purl.org/ppeo/PPEO.owl#environment_parameter
PPEO:environment_parameter rdf:type owl:Class ;
rdfs:subClassOf PPEO:technologicalConcept ,
[ rdf:type owl:Restriction ;
owl:onProperty PPEO:hasName ;
owl:qualifiedCardinality "1"^^xsd:nonNegativeInteger ;
owl:onDataRange xsd:string
] ,
[ rdf:type owl:Restriction ;
owl:onProperty PPEO:hasValue ;
owl:qualifiedCardinality "1"^^xsd:nonNegativeInteger ;
owl:onDataRange [ rdf:type rdfs:Datatype ;
owl:unionOf ( xsd:float
xsd:int
xsd:string
)
]
] ;
rdfs:comment "A parameter of the environment which is represented by a name and a value."@en ;
rdfs:label "environment parameter"@en .
### http://purl.org/ppeo/PPEO.owl#event
PPEO:event rdf:type owl:Class ;
rdfs:subClassOf PPEO:technologicalConcept ,
[ rdf:type owl:Restriction ;
owl:onProperty PPEO:hasDateTime ;