Update configuration and refactor CLI structure for Gemini Suite

- Introduced a unified configuration system for the Gemini Suite, consolidating settings for HAPPE, IDA, and memory management.
- Refactored the CLI to enhance command-line argument handling and improve user interaction with the HAPPE daemon.
- Removed deprecated MCP server scripts and streamlined the installation process by updating the `Cargo.toml` files across multiple modules.
- Enhanced error handling and logging throughout the application for better debugging and maintenance.
- Updated dependencies to ensure compatibility and improved functionality across the codebase.

Author: frostdev-ops

Cargo.lock

@@ -8,6 +8,8 @@ members = [
     "ipc",       # Inter-process communication definitions
     "ida",       # Internal Dialogue App daemon
     "happe",     # Host Application Environment daemon (Placeholder)
+    "install",   # Installer crate for Gemini CLI Suite
+    "daemon-manager", # CLI for managing gemini-suite daemons and MCP servers
 ]
 
 [workspace.lints]

Cargo.toml

@@ -1,54 +1,36 @@
 [package]
 name = "gemini-cli"
 version = "0.1.0"
-edition = "2024"
+edition = "2021"
 
 [dependencies]
 tokio = { version = "1", features = ["full"] }
-reqwest = { version = "0.12", features = ["json", "stream"] }
 serde = { version = "1.0", features = ["derive"] }
 serde_json = "1.0"
-clap = { version = "4.4", features = ["derive"] }
+clap = { version = "4.4", features = ["derive", "env"] }
 dotenv = "0.15"
-confy = "0.6"
 dirs = "5.0"
-base64 = "0.21"
 colored = "2.1.0"
 indicatif = "0.17"
 pulldown-cmark = "0.9"
 syntect = "5.1"
 dialoguer = "0.11"
-toml = "0.8.8"
 log = "0.4"
 env_logger = "0.11"
 uuid = { version = "1.6", features = ["v4"] }
-futures = "0.3"
-lazy_static = "1.4"
 ctrlc = "3.4.6"
 diffy = "0.3"
-futures-util = "0.3.31"
-async-trait = "0.1"
 anyhow = "1.0"
-# Add path dependencies to the new libraries
-gemini-core = { path = "../core" }
-gemini-mcp = { path = "../mcp" }
-gemini-memory = { path = "../memory" }
+tracing = "0.1"
 gemini-ipc = { path = "../ipc" }
 
 [[bin]]
-name = "gemini-cli-bin"
+name = "gemini-cli"
 path = "src/main.rs"
 
-# The memory MCP server is used as a module, not as a separate binary
-
-# Add similar entries for filesystem and command servers if they were compiled separately
-# [[bin]]
-# name = "filesystem-mcp"
-# path = "src/mcp/servers/filesystem/main.rs"
-# 
-# [[bin]]
-# name = "command-mcp"
-# path = "src/mcp/servers/command/main.rs"
+[[bin]]
+name = "gemini-cli-bin"
+path = "src/main.rs"
 
 [dev-dependencies]
-tempfile = "3.19.1"
+tempfile = "3.10"