build!: Split dev deps into dev, tests, lint, docs groups (#619)

Author: knQzx

.github/workflows/python-cqa.yml

@@ -11,7 +11,7 @@ jobs:
           submodules: recursive
       - uses: actions/setup-python@v5
       - name: Install dependencies
-        run: pip install -e '.[dev]'
+        run: pip install -e '.[lint]'
       - name: Check style
         run: python3 -m ruff check --output-format=github
       - name: Check formatting
@@ -43,7 +43,7 @@ jobs:
         python-version: ${{ matrix.python-version }}
     - name: Install dependencies
       run: |
-        pip install -e .[dev,extras]
+        pip install -e .[tests,extras]
     - name: Test with pytest
       run: |
         python -m pytest --vcr-record=none

Makefile

@@ -45,7 +45,7 @@ venv/%:
 #=> develop: install package in develop mode
 .PHONY: develop setup
 develop setup:
-	pip install -e .[dev,extras,notebooks]; \
+	pip install -e .[tests,lint,docs,extras,notebooks]; \
 	pre-commit install
 
 #=> devready: create venv, install prerequisites, install pkg in develop mode

pyproject.toml

@@ -53,17 +53,18 @@ extras = [
     "click",
     "pysam==0.23.0",  # pinned pending https://github.com/ga4gh/vrs-python/issues/560
 ]
-dev = [
-    # tests
+tests = [
     "pytest",
     "pytest-cov",
     "pytest-vcr",
     "vcrpy>=7.0.0",
     "pyyaml",
-    # style
+]
+lint = [
     "pre-commit>=4.0.1",
     "ruff==0.9.4",
-    # docs
+]
+docs = [
     "sphinx",
     "sphinx_rtd_theme",
 ]