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NEWS for the Greg package

Changes for 2.0.3

  • Fix documentation links (new CRAN policy)
  • Fixed dplyr deprecation warning for across

Changes for 2.0.2

  • Fixed minor documentation issue with hidden functions

Changes for 2.0.1

  • Improved forestplot integration so that fp_... functions are available (see example for forestplotRegrObj)

Changes for 2.0.0

  • BREAKING: Refactored the forestplogRegrObj function to S3-format
  • Added broom::tidy for rms-models
  • Updated to new forestplot API together with some general improvements to the forestplot functions
  • Dropped magrittr in favor of R native-pipe
  • Converted examples to tidyverse style

Changes for 1.4.1

  • Fix for updated survival package with a more consistent naming (3.4-0)
  • Fix for plotHR axes & bty and improved example with dplyr syntax
  • Fix for bad offset() handling, was ignored in getCrudeAndAdjusted unless presented as an offset= parameter.

Changes for 1.4.0

  • The plotHR has now a more elegant plot S3-function separating the preparing of the plot and the actual output (Note: if called within a loop you now need to call print/plot on the returned object)

Changes for 1.3.4

  • Fix for htmlTable 2.0 which means that the css.group option has been dropped in favor of the new theming & addHtmlTableStyle function. See example and vignette for instructions on how-to.

Changes for 1.3.3

  • Fix for new handling of data.frames in next R version

Changes for 1.3

  • Fix vignette bug
  • Fixed CRAN package names
  • Fix bug due to change in survival::coxph

Changes for 1.2

  • Fixed spelling errors, travis package check, added tests for coverage and other things related to CRAN submission
  • Added a timeSplitter for making time splits through the Epi::Lexis object simpler
  • Added a check for null as input parameter to printCrudeAndAdjusted
  • Added a subset function for get/printCrudeAndAdjusted
  • Updated the test cases
  • The reference now has the same number of digits as the rest of the coefficients
  • Added htmlTable.printCrudeAndAdjusted for more flexible handling

Changes for 1.1

  • The printCrudeAndAdjusted calls now the correct print version
  • Added vignette for basic use cases
  • Fixed non-linearity
  • Added options-alternative to tailor printCrudeAndAdjusted output
  • Fixed issue #5
  • Fixed tspanner handling for printCrudeAndAdjustedModel
  • Bug when with descriptive stats due to missing misspelled (useNa instead of useNA)
  • Added a rbind for printCrudeAndAdjusted
  • Added handling of missing variable for the outcome estimator
  • Fixed simpleRmsAnova
  • Fixed getModelData with subsetting arguments not being constants
  • All show_missing are now useNA to comply with main package standards
  • A few bug fixes

Changes for 1.0.0

  • Changed the desc_ arguments into a list using the caDescribeOpts
  • Refactored major parts of the printCrudeAndAdjusted
  • Changed to use model.frame() under the hood - hopefully stabilizing the functions as it uses a more standard R-approach
  • The update() now actively runs under the model environment
  • The plotHR is updated and can now plot contrasts if provided a rms-package regression allowing for efficient comparison of multiple models. Internal functions have also been externalized.
  • All current unit tests now pass and several new ones have been added
  • Implemented DRY roxygen2 code
  • The getCrudeAndAdjusted now retains cluster and stratas - there are options for leaving these out to retain old behavior
  • The getCrudeAndAdjusted now allows for selecting variables. The printCrudeAndAdjusted now passes on the order option when variable selection is of interest.
  • Cleaned variables for the forestplot2 functions
  • Added the addNonlinearity that adds non-linearity for a variable if it finds support for it in the data.

Changes for 0.7.1

  • Internalized some of the private function documentation
  • Improved the outcome extractor function and added test cases

Changes for 0.7.0

  • Major remake of the print-/getCrudeAndAdjusted so that they depend on prMapVariable2Name and everything is now centered around the variables
  • The printCrudeAndAdjustedModel no longer capitalizes the first letter in order to allow all lower case var names
  • Added imputation compatibility with the Hmisc::fit.mult.impute function
  • Added multiple test cases for stability

Changes for 0.6.1

  • Changed to semantic version numbering
  • Fixed bug for printCrudeAndAdjusted when using matrix from the getC&A
  • Fixed bug when boolean desc_column was generated
  • Added stop() when using descriptive column without add_refrerences

Changes for 0.6.0.1

  • The getCrudeAndAdjusted now handles the intercept term better for naming the rows (Thanks to Victor)
  • The getCrudeAndAdjusted/printCrudeAndAdjusted now use 'model' instead 'fit' for the model regression object name
  • The printCrudeAndAdjusted now calls print on the htmlTable_str object so that it appears as expected
  • Added unit tests

Changes for 0.6.0.0

  • The split from the Gmisc package