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reader.py
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import os
from collections import UserDict
from dataclasses import dataclass
from datetime import datetime
from functools import partial
from math import log2
from os import PathLike
from pathlib import Path
from typing import Callable, Iterable, Mapping, Optional, Protocol, Union
from numpy import dtype
from pandas import DataFrame, Series
from pandas._typing import Axes # pyright: ignore[reportPrivateImportUsage]
from harp.data.io import MessageType, read
from harp.data.model import BitMask, GroupMask, Model, PayloadMember, Register
from harp.data.schema import read_schema
from harp.data.typing import _BufferLike, _FileLike
@dataclass
class _ReaderParams:
base_path: Path
epoch: Optional[datetime] = None
keep_type: bool = False
class _ReadRegister(Protocol):
def __call__(
self,
file_or_buf: Optional[Union[_FileLike, _BufferLike]] = None,
epoch: Optional[datetime] = None,
keep_type: bool = False,
) -> DataFrame: ...
class RegisterReader:
register: Register
read: _ReadRegister
def __init__(
self,
register: Register,
read: _ReadRegister,
) -> None:
self.register = register
self.read = read
class RegisterMap(UserDict[str, RegisterReader]):
_address_map: Mapping[int, RegisterReader]
def __init__(self, registers: Mapping[str, RegisterReader]) -> None:
super().__init__(registers)
self._address_map = {value.register.address: value for value in registers.values()}
def __getitem__(self, key: Union[str, int]) -> RegisterReader:
if isinstance(key, int):
return self._address_map[key]
else:
return super().__getitem__(key)
class DeviceReader:
device: Model
registers: RegisterMap
def __init__(self, device: Model, registers: Mapping[str, RegisterReader]) -> None:
self.device = device
self.registers = RegisterMap(registers)
def __dir__(self) -> Iterable[str]:
return self.registers.keys()
def __getattr__(self, __name: str) -> RegisterReader:
return self.registers[__name]
def _compose_parser(
f: Callable[[DataFrame], DataFrame],
g: Callable[..., DataFrame],
params: _ReaderParams,
) -> Callable[..., DataFrame]:
def parser(
data: Optional[Union[_FileLike, _BufferLike]] = None,
columns: Optional[Axes] = None,
epoch: Optional[datetime] = params.epoch,
keep_type: bool = params.keep_type,
):
df = g(data, columns, epoch, keep_type)
result = f(df)
type_col = df.get(MessageType.__name__)
if type_col is not None:
result[MessageType.__name__] = type_col
return result
return parser
def _create_bit_parser(mask: int):
def parser(xs: Series) -> Series:
return (xs & mask) != 0
return parser
def _create_bitmask_parser(bitMask: BitMask):
lookup = [(k, _create_bit_parser(int(v.root))) for k, v in bitMask.bits.items()]
def parser(df: DataFrame):
return DataFrame({n: f(df[0]) for n, f in lookup}, index=df.index)
return parser
def _create_groupmask_lookup(groupMask: GroupMask):
return {int(v.root): n for n, v in groupMask.values.items()}
def _create_groupmask_parser(name: str, groupMask: GroupMask):
lookup = _create_groupmask_lookup(groupMask)
def parser(df: DataFrame):
return DataFrame({name: df[0].map(lookup)})
return parser
def _mask_shift(mask: int):
lsb = mask & (~mask + 1)
return int(log2(lsb))
def _create_payloadmember_parser(device: Model, member: PayloadMember):
offset = member.offset
if offset is None:
offset = 0
shift = 0
if member.mask is not None:
shift = _mask_shift(member.mask)
lookup = None
if member.maskType is not None:
key = member.maskType.root
groupMask = None if device.groupMasks is None else device.groupMasks.get(key)
if groupMask is not None:
lookup = _create_groupmask_lookup(groupMask)
is_boolean = False
if member.interfaceType is not None:
is_boolean = member.interfaceType.root == "bool"
def parser(df: DataFrame):
series = df[offset]
if member.mask is not None:
series = series & member.mask
if shift > 0:
series = Series(series.values >> shift, series.index) # type: ignore
if is_boolean:
series = series != 0
elif lookup is not None:
series = series.map(lookup)
return series
return parser
def _create_register_reader(register: Register, params: _ReaderParams):
def reader(
file_or_buf: Optional[Union[_FileLike, _BufferLike]] = None,
columns: Optional[Axes] = None,
epoch: Optional[datetime] = params.epoch,
keep_type: bool = params.keep_type,
):
if file_or_buf is None:
file_or_buf = f"{params.base_path}_{register.address}.bin"
data = read(
file_or_buf,
address=register.address,
dtype=dtype(register.type),
length=register.length,
columns=columns,
epoch=epoch,
keep_type=keep_type,
)
return data
return reader
def _create_register_handler(device: Model, name: str, params: _ReaderParams):
register = device.registers[name]
reader = _create_register_reader(register, params)
if register.maskType is not None:
key = register.maskType.root
bitMask = None if device.bitMasks is None else device.bitMasks.get(key)
if bitMask is not None:
bitmask_parser = _create_bitmask_parser(bitMask)
reader = _compose_parser(bitmask_parser, reader, params)
return RegisterReader(register, reader)
groupMask = None if device.groupMasks is None else device.groupMasks.get(key)
if groupMask is not None:
groupmask_parser = _create_groupmask_parser(name, groupMask)
reader = _compose_parser(groupmask_parser, reader, params)
return RegisterReader(register, reader)
if register.payloadSpec is not None:
member_parsers = [
(key, _create_payloadmember_parser(device, member))
for key, member in register.payloadSpec.items()
]
def payload_parser(df: DataFrame):
return DataFrame({n: f(df) for n, f in member_parsers}, index=df.index)
reader = _compose_parser(payload_parser, reader, params)
return RegisterReader(register, reader)
columns = (
[name]
if register.length is None or register.length == 1
else [f"{name}_{i}" for i in range(register.length)]
)
reader = partial(reader, columns=columns)
return RegisterReader(register, reader)
def create_reader(
device: Union[str, PathLike, Model],
include_common_registers: bool = True,
epoch: Optional[datetime] = None,
keep_type: bool = False,
):
"""Creates a device reader object from the specified dataset or schema.
Parameters
----------
device
A path to the device schema, dataset folder, or parsed device schema object
describing the device.
include_common_registers
Specifies whether to include the set of Harp common registers in the
parsed device schema object. If a parsed device schema object is provided,
this parameter is ignored.
epoch
The default reference datetime at which time zero begins. If specified,
the data frames returned by each register reader will have a datetime index.
keep_type
Specifies whether to include a column with the message type by default.
Returns
-------
A device reader object which can be used to read binary data for each
register or to access metadata about each register. Individual registers
can be accessed using dot notation using the name of the register as the
key.
"""
if isinstance(device, Model):
base_path = Path(device.device)
else:
path = Path(device).absolute().resolve()
is_dir = os.path.isdir(path)
if is_dir:
device = path / "device.yml"
device = read_schema(device, include_common_registers)
base_path = path / device.device if is_dir else path.parent / device.device
reg_readers = {
name: _create_register_handler(device, name, _ReaderParams(base_path, epoch, keep_type))
for name in device.registers.keys()
}
return DeviceReader(device, reg_readers)