aliases.txt

shopt -s expand_aliases

alias bconfig='nano ~/.bash_profile'
alias bsource='source ~/.bash_profile'

alias nano="nano -cil"
alias wgetc="wget -c --retry-connrefused"

alias ls="ls --color=auto -p"
alias ll="ls -lh"
alias la="ls -a"
alias ld="ls -d */"
alias lu="ls -U"
alias luh="ls -U | head"

alias rm="rm -I"
alias les="less"
alias lesss="less -S"
alias grep="grep --color"
alias grepn="grep -n"
alias grepi="grep -i"
alias grepv="grep -v"

alias mkdir="mkdir -p"
alias wcl="wc -l"
alias sorta="sort -k1,1V"

alias awkcc="awk -v FS=',' -v OFS=','"
alias awktt="awk -v FS='\t' -v OFS='\t'"
alias awkct="awk -v FS=',' -v OFS='\t'"
alias awktc="awk -v FS='\t' -v OFS=','"

alias col="column -t"
alias chx="chmod +x"

alias tmuxl="tmux ls"
alias tmuxt="tmux a -t"
alias tmuxn="tmux new -s"

alias qstatl="qstat -xml | tr '\n' ' ' | sed 's#<job_list[^>]*>#\n#g' | sed 's#<[^>]*>##g' | grep ' ' | column -t"
function qstatlc { qstat -ext -xml | tr '\n' ' ' | sed 's#<job_list[^>]*>#\n#g' | sed 's#<[^>]*>##g' | grep ' ' | column -t | awk '{print $1" "$4" "$6" "$8}' | uniq -c | column -t; }

function binbash { echo '#!/bin/bash' > $1; echo '#$ -cwd' >> $1; echo 'source ~/scripts/error-handling.sh' >> $1; echo 'source ~/.bash_profile' >> $1; chmod +x $1; }
function binbasht { echo '#!/bin/bash' > $1; echo '#$ -cwd' >> $1; echo "#\$ -t 1-$2" >> $1; echo 'source ~/scripts/error-handling.sh' >> $1; echo 'source ~/.bash_profile' >> $1; chmod +x $1; }

# contents of ~/scripts/error-handling.sh
error() {
  echo "ERROR: $@" 1>&2
}

fail() {
  error "FAIL: $@"
  exit 1
}