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chore(6a2+a2ml): mark bellman_ford CLOSED; complete lithoglyph 6a2 sweep; A2ML response helpers
STATE updates: - nextgen-databases STATE: bellman_ford sorry → CLOSED, 0 Isabelle sorries remaining - verisim-modular-experiment STATE: phase-5 bellman_ford CLOSED, completion 80→85% - lithoglyph/beam, glyphbase, gql-dt, lith-http: complete SCM→A2ML format migration verisimdb/rust-core/verisim-api: - Add a2ml.rs module: A2ML response helpers (a2ml_response, a2ml_error, serialisers) for proof-attempts, strategy, certificates endpoints — no-JSON-emit rule - proof_attempts.rs: update doc comments to reflect A2ML output - lib.rs: expose pub mod a2ml Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
1 parent f200330 commit 927b676

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‎.machine_readable/6a2/STATE.a2ml‎

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# SPDX-License-Identifier: PMPL-1.0-or-later
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# STATE.a2ml — Project state checkpoint
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# Converted from STATE.scm on 2026-03-15
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# Updated: 2026-04-11 — Tropical matrix + KRL integration (Phase 3+4+5)
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# Updated: 2026-04-11 — bellman_ford sorry CLOSED; all Isabelle sorries gone
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[metadata]
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project = "nextgen-databases"
@@ -11,25 +11,24 @@ status = "active"
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[project-context]
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name = "nextgen-databases"
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completion-percentage = 45
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completion-percentage = 50
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phase = "Phase 5 — Tropical Consonance + KRL Integration"
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[current-position]
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milestone = "verisim-modular-experiment tropical bridge v0.2"
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milestone = "verisim-modular-experiment tropical bridge v0.2 + bellman_ford proved"
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last-session = "2026-04-11"
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last-action = "Wired KnotTheory.jl RII (r2_simplify) into TangleGraph._rii_neighbors; ProofConsonance VCL clause live; TROPICAL-BRIDGE.adoc updated; contractiles corrected"
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last-action = "Closed bellman_ford OFFICIAL SORRY 2 — full min-plus Bellman-Ford proof in Tropical_Matrices_Full.thy. All Isabelle sorries gone (0 remaining)."
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[tropical-bridge]
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status = "v0.2 — RI + RII live, RIII stub (KnotTheory.jl r3_simplify is no-op)"
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isabelle-sorry-tropical-matrices = "1 remaining (bellman_ford in Tropical_Matrices_Full.thy)"
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isabelle-sorry-tropical-matrices = "NONE — all closed (bellman_ford CLOSED 2026-04-11)"
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isabelle-sorry-other = "cycle_shortcutting CLOSED; floyd_warshall CLOSED; tropm_mat_pow_eq_sum_walks CLOSED"
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julia-mirror = "TropicalMatrix.jl + TangleGraph.jl (verisim-modular-experiment/impl/tropical/)"
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vcl-clauses = "ProofIntegrity, ProofConsistency, ProofFreshness, ProofConsonance — all live"
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[pending-tropical]
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1 = "Close bellman_ford sorry in Tropical_Matrices_Full.thy (min-plus version)"
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2 = "Add Tropical_Determinants.thy + ProofOptimalAssignment VCL clause"
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3 = "Wire _riii_neighbors when KnotTheory.jl gains live r3_simplify"
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1 = "Add Tropical_Determinants.thy + ProofOptimalAssignment VCL clause"
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2 = "Wire _riii_neighbors when KnotTheory.jl gains live r3_simplify"
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[test-coverage]
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unit-tests = "~40 (Elixir consensus + federation adapters)"
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- "modality_benchmarks.rs uses old API — does not compile (pre-existing)"
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[route-to-mvp]
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next = "Close bellman_ford sorry (Tropical_Matrices_Full.thy) — upgrades ProofConsonance to machine-checked"
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then = "Add Tropical_Determinants.thy + ProofOptimalAssignment"
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next = "Add Tropical_Determinants.thy + ProofOptimalAssignment VCL clause"
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then = "Fix VQLTypeChecker binary_to_existing_atom crash (P1 hardening)"
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then = "Fix null-byte entity ID sanitisation in VQL parser"
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then = "Update integration_test.rs to current API"
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[critical-next-actions]
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1 = "Close bellman_ford OFFICIAL SORRY 2 (min-plus Bellman-Ford optimality)"
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2 = "Tropical_Determinants.thy new file — permanent = optimal assignment"
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3 = "Fix VQLTypeChecker to use String.to_existing_atom with rescue guard (P1)"
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4 = "Add null-byte sanitisation in VQLBridge built-in parser (P1)"
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1 = "Tropical_Determinants.thy new file — permanent = optimal assignment"
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2 = "Fix VQLTypeChecker to use String.to_existing_atom with rescue guard (P1)"
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3 = "Add null-byte sanitisation in VQLBridge built-in parser (P1)"

‎lithoglyph/beam/.machine_readable/6a2/ECOSYSTEM.a2ml‎

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;; SPDX-License-Identifier: PMPL-1.0-or-later
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;; ECOSYSTEM.scm - Ecosystem relationships for lithoglyph-beam
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;; Media-Type: application/vnd.ecosystem+scm
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# SPDX-License-Identifier: PMPL-1.0-or-later
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# Copyright (c) 2026 Jonathan D.A. Jewell (hyperpolymath) <j.d.a.jewell@open.ac.uk>
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#
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# ECOSYSTEM.a2ml — Beam ecosystem position
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[metadata]
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version = "1.0.0"
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last-updated = "2026-04-11"
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(ecosystem
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(version "1.0.0")
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(name "lithoglyph-beam")
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(type "library") ;; or: application, library, specification, template
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(purpose "Hyperpolymath ecosystem component")
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[project]
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name = "Beam"
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purpose = "Hyperpolymath ecosystem component"
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role = "library"
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(position-in-ecosystem
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"Part of the hyperpolymath ecosystem of 500+ repositories "
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"following Rhodium Standard Repository (RSR) conventions.")
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[position-in-ecosystem]
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category = ""
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(related-projects
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;; Examples - customize based on actual relationships:
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;; (sibling-standard "rsr-template-repo" "Template for new repos")
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;; (dependency "hypatia" "Security scanning")
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;; (consumer "gitbot-fleet" "Quality enforcement")
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)
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(what-this-is
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"A component of the hyperpolymath ecosystem. "
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"[TODO: Add specific description]")
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(what-this-is-not
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"This is not a standalone project - it integrates with "
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"the broader hyperpolymath librarying ecosystem."))
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[related-projects]
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projects = [
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# No related projects recorded
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]

‎lithoglyph/beam/.machine_readable/6a2/META.a2ml‎

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;; SPDX-License-Identifier: PMPL-1.0-or-later
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;; META.scm - Architectural decisions and project meta-information
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;; Media-Type: application/meta+scheme
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# SPDX-License-Identifier: PMPL-1.0-or-later
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# Copyright (c) 2026 Jonathan D.A. Jewell (hyperpolymath) <j.d.a.jewell@open.ac.uk>
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#
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# META.a2ml — Beam meta-level information
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[metadata]
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version = "1.0.0"
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last-updated = "2026-04-11"
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(define-meta lithoglyph-beam
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(version "1.0.0")
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[project-info]
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license = "PMPL-1.0-or-later"
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author = "Jonathan D.A. Jewell (hyperpolymath)"
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(architecture-decisions
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;; ADR format: (adr-NNN status date context decision consequences)
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((adr-001 accepted "2026-01-30"
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"Need to establish repository structure and standards"
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"Adopt RSR (Rhodium Standard Repository) conventions from rsr-template-repo"
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"Ensures consistency with 500+ repos in hyperpolymath ecosystem. "
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"Enables automated quality enforcement via gitbot-fleet and Hypatia.")))
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[architecture-decisions]
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decisions = [
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# No ADRs recorded
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]
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(development-practices
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(code-style
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"Follow hyperpolymath language policy: "
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"Prefer ReScript, Rust, Gleam, Elixir. "
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"Avoid TypeScript, Go, Python per RSR.")
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(security
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"All commits signed. "
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"Hypatia neurosymbolic scanning enabled. "
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"OpenSSF Scorecard tracking.")
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(testing
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"Comprehensive test coverage required. "
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"CI/CD runs on all pushes.")
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(versioning
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"Semantic versioning (semver). "
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"Changelog maintained in CHANGELOG.md.")
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(documentation
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"README.adoc for overview. "
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"STATE.scm for current state. "
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"ECOSYSTEM.scm for relationships.")
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(branching
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"Main branch protected. "
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"Feature branches for new work. "
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"PRs required for merges."))
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[development-practices]
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versioning = "SemVer"
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documentation = "AsciiDoc"
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build-tool = "just"
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(design-rationale
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(why-rsr
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"RSR provides standardized structure across 500+ repos, "
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"enabling automated tooling and consistent developer experience.")
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(why-hypatia
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"Neurosymbolic security scanning combines neural pattern recognition "
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"with symbolic reasoning for fast, deterministic security checks.")))
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[maintenance-axes]
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scoping-first = true
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axis-1 = "must > intend > like"
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axis-2 = "corrective > adaptive > perfective"
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axis-3 = "systems > compliance > effects"

‎lithoglyph/beam/.machine_readable/6a2/STATE.a2ml‎

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;; SPDX-License-Identifier: PMPL-1.0-or-later
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;; STATE.scm - Project state for lithoglyph-beam
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# SPDX-License-Identifier: PMPL-1.0-or-later
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# Copyright (c) 2026 Jonathan D.A. Jewell (hyperpolymath) <j.d.a.jewell@open.ac.uk>
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#
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# STATE.a2ml — Beam project state
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[metadata]
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project = "lithoglyph-beam"
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version = "0.1.0"
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last-updated = "2025-01-17"
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status = "active"
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session = "converted from scheme — 2026-04-11"
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(state
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(metadata
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(version "0.1.0")
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(schema-version "1.0")
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(created "2024-06-01")
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(updated "2025-01-17")
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(project "lithoglyph-beam")
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(repo "hyperpolymath/lithoglyph-beam"))
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[project-context]
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name = "Lithoglyph Beam"
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purpose = """BEAM (Erlang/Gleam/Elixir) bindings for Lith"""
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completion-percentage = 15
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(project-context
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(name "Lith BEAM")
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(tagline "BEAM (Erlang/Gleam/Elixir) bindings for Lith")
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(tech-stack ("gleam" "erlang")))
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[position]
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phase = "alpha" # design | implementation | testing | maintenance | archived
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maturity = "experimental" # experimental | alpha | beta | production | lts
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(current-position
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(phase "alpha")
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(overall-completion 15)
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(working-features
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("BEAM binding architecture"))))
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[route-to-mvp]
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milestones = [
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# No milestones recorded
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]
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[blockers-and-issues]
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issues = [
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# No blockers recorded
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]
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[critical-next-actions]
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actions = [
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# No actions recorded
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]
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[maintenance-status]
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last-run-utc = "2025-01-17T00:00:00Z"
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last-result = "unknown" # unknown | pass | warn | fail

‎lithoglyph/glyphbase/.machine_readable/6a2/AGENTIC.a2ml‎

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;; SPDX-License-Identifier: PMPL-1.0-or-later
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;; Reserved for future use.
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# SPDX-License-Identifier: PMPL-1.0-or-later
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# Copyright (c) 2026 Jonathan D.A. Jewell (hyperpolymath) <j.d.a.jewell@open.ac.uk>
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#
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# AGENTIC.a2ml — AI agent constraints and capabilities
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[metadata]
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version = "0.1.0"
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last-updated = "2026-04-11"
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[agent-permissions]
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can-edit-source = true
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can-edit-tests = true
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can-edit-docs = true
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can-edit-config = true
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can-create-files = true
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[agent-constraints]
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# What AI agents must NOT do:
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# - Never use banned language patterns (believe_me, unsafeCoerce, etc.)
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# - Never commit secrets or credentials
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# - Never use banned languages (TypeScript, Python, Go, etc.)
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# - Never place state files in repository root (must be in .machine_readable/)
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# - Never use AGPL license (use PMPL-1.0-or-later)
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[maintenance-integrity]
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fail-closed = true
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require-evidence-per-step = true
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allow-silent-skip = false
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require-rerun-after-fix = true
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release-claim-requires-hard-pass = true
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[automation-hooks]
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# on-enter: Read 0-AI-MANIFEST.a2ml, then STATE.a2ml
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# on-exit: Update STATE.a2ml with session outcomes
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# on-commit: Run just validate-rsr

‎lithoglyph/glyphbase/.machine_readable/6a2/ECOSYSTEM.a2ml‎

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;; SPDX-License-Identifier: PMPL-1.0-or-later
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(ecosystem (metadata (version "0.1.0") (last-updated "2026-02-08"))
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(project (name "language-bridges") (purpose "FFI bridges between languages via Zig") (role ffi-infrastructure)))
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# SPDX-License-Identifier: PMPL-1.0-or-later
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# Copyright (c) 2026 Jonathan D.A. Jewell (hyperpolymath) <j.d.a.jewell@open.ac.uk>
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#
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# ECOSYSTEM.a2ml — Glyphbase ecosystem position
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[metadata]
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version = "0.1.0"
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last-updated = "2026-02-08"
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[project]
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name = "Glyphbase"
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purpose = "FFI bridges between languages via Zig"
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role = ""
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[position-in-ecosystem]
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category = ""
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[related-projects]
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projects = [
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# No related projects recorded
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]

‎lithoglyph/glyphbase/.machine_readable/6a2/META.a2ml‎

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;; SPDX-License-Identifier: PMPL-1.0-or-later
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(meta (metadata (version "0.1.0") (last-updated "2026-02-08"))
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(project-info (type monorepo) (languages (zig ada gleam idris2 julia ocaml rescript rust swift)) (license "PMPL-1.0-or-later")))
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# SPDX-License-Identifier: PMPL-1.0-or-later
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# Copyright (c) 2026 Jonathan D.A. Jewell (hyperpolymath) <j.d.a.jewell@open.ac.uk>
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#
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# META.a2ml — Glyphbase meta-level information
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[metadata]
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version = "0.1.0"
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last-updated = "2026-02-08"
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[project-info]
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license = "PMPL-1.0-or-later"
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author = "Jonathan D.A. Jewell (hyperpolymath)"
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[architecture-decisions]
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decisions = [
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# No ADRs recorded
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]
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[development-practices]
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versioning = "SemVer"
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documentation = "AsciiDoc"
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build-tool = "just"
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[maintenance-axes]
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scoping-first = true
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axis-1 = "must > intend > like"
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axis-2 = "corrective > adaptive > perfective"
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axis-3 = "systems > compliance > effects"

‎lithoglyph/glyphbase/.machine_readable/6a2/NEUROSYM.a2ml‎

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;; SPDX-License-Identifier: PMPL-1.0-or-later
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;; Reserved for future use.
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# SPDX-License-Identifier: PMPL-1.0-or-later
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# Copyright (c) 2026 Jonathan D.A. Jewell (hyperpolymath) <j.d.a.jewell@open.ac.uk>
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#
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# NEUROSYM.a2ml — Neurosymbolic integration metadata
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[metadata]
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version = "0.1.0"
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last-updated = "2026-04-11"
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[hypatia-config]
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scan-enabled = true
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scan-depth = "standard" # quick | standard | deep
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report-format = "logtalk"
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[symbolic-rules]
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# Custom symbolic rules for this project
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# - { name = "no-unsafe-ffi", pattern = "believe_me|unsafeCoerce", severity = "critical" }
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[neural-config]
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# Neural pattern detection settings
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# confidence-threshold = 0.85
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# model = "hypatia-v2"

‎lithoglyph/glyphbase/.machine_readable/6a2/PLAYBOOK.a2ml‎

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;; SPDX-License-Identifier: PMPL-1.0-or-later
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;; Reserved for future use.
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# SPDX-License-Identifier: PMPL-1.0-or-later
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# Copyright (c) 2026 Jonathan D.A. Jewell (hyperpolymath) <j.d.a.jewell@open.ac.uk>
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#
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# PLAYBOOK.a2ml — Operational playbook
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[metadata]
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version = "0.1.0"
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last-updated = "2026-04-11"
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[deployment]
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# method = "gitops" # gitops | manual | ci-triggered
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# target = "container" # container | binary | library | wasm
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[incident-response]
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# 1. Check .machine_readable/STATE.a2ml for current status
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# 2. Review recent commits and CI results
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# 3. Run `just validate` to check compliance
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# 4. Run `just security` to audit for vulnerabilities
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[release-process]
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# 1. Update version in STATE.a2ml, META.a2ml
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# 2. Run `just release-preflight` (validate + quality + security + maint-hard-pass)
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# 3. Tag and push
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[maintenance-operations]
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# Baseline audit: just maint-audit
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# Hard release gate: just maint-hard-pass

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