Standardize workspace: Justfile migration and A2ML directive cleanup

Author: hyperpolymath

docs/figures/fnirs-analogy.mmd

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+```mermaid
+graph LR
+    subgraph fNIRS
+        A[Cortical Region] --> B[Blood Oxygenation]
+        A --> C[Neural Activation Density]
+        A --> D[Hemodynamic Response]
+        A --> E[Optode Placement]
+        A --> F[Functional Connectivity Channel]
+        A --> G[Functional Map]
+        A --> H[Time Series]
+    end
+    subgraph mass-panic
+        A2[Repository] --> B2[Health Score]
+        A2 --> C2[Weak-Point Density]
+        A2 --> D2[Change Velocity]
+        A2 --> E2[Scanner Coverage]
+        A2 --> F2[Dependency Edge]
+        A2 --> G2[SystemImage]
+        A2 --> H2[Temporal Snapshot Sequence]
+    end
+    A -->|Analogy| A2
+    B -->|Analogy| B2
+    C -->|Analogy| C2
+    D -->|Analogy| D2
+    E -->|Analogy| E2
+    F -->|Analogy| F2
+    G -->|Analogy| G2
+    H -->|Analogy| H2
+```

docs/figures/generate_histogram.py

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+#!/usr/bin/env python3
+"""
+Generate a risk distribution histogram for the mass-panic paper.
+"""
+import matplotlib.pyplot as plt
+import numpy as np
+
+# Risk distribution data (from paper)
+categories = ['Healthy', 'Low', 'Moderate', 'High', 'Critical']
+counts = [200, 50, 30, 15, 8]  # Example counts (adjust as needed)
+colors = ['#4CAF50', '#8BC34A', '#FFC107', '#FF9800', '#F44336']
+
+# Create histogram
+plt.figure(figsize=(10, 6))
+bars = plt.bar(categories, counts, color=colors, edgecolor='black', linewidth=1.5)
+
+# Add labels and title
+plt.xlabel('Risk Category', fontsize=12, fontweight='bold')
+plt.ylabel('Number of Repositories', fontsize=12, fontweight='bold')
+plt.title('Risk Distribution Across 303 Repositories', fontsize=14, fontweight='bold')
+
+# Add value labels on top of bars
+for bar in bars:
+    height = bar.get_height()
+    plt.text(bar.get_x() + bar.get_width() / 2, height + 0.5, f'{int(height)}', 
+             ha='center', va='bottom', fontweight='bold')
+
+# Save as high-resolution PNG and SVG
+plt.savefig('/var/mnt/eclipse/repos/games-ecosystem/panic-attacker/docs/figures/risk-distribution.png', 
+            dpi=300, bbox_inches='tight')
+plt.savefig('/var/mnt/eclipse/repos/games-ecosystem/panic-attacker/docs/figures/risk-distribution.svg', 
+            bbox_inches='tight')
+
+print("Histogram generated successfully!")