Merge pull request #104 from lguerard/devel

ehrenfeu · web-flow · commit 0ecc329a341a · 2026-01-14T14:05:15.000+01:00
Fix issue with java path object by using `join2` from the `imcflibs.pathtools` module.
diff --git a/src/imcflibs/imagej/misc.py b/src/imcflibs/imagej/misc.py
@@ -614,7 +614,7 @@ def save_image_in_format(imp, format, out_dir, series, pad_number, split_channel
     for index, current_imp in enumerate(imp_to_use):
         basename = imp.getShortTitle()
 
-        out_path = os.path.join(
+        out_path = pathtools.join2(
             dir_to_save[index],
             basename + "_series_" + str(series).zfill(pad_number),
         )

Original file line number	Diff line number	Diff line change
`@@ -614,7 +614,7 @@ def save_image_in_format(imp, format, out_dir, series, pad_number, split_channel`
`614`	`614`	`for index, current_imp in enumerate(imp_to_use):`
`615`	`615`	`basename = imp.getShortTitle()`
`616`	`616`
`617`		`- out_path = os.path.join(`
	`617`	`+ out_path = pathtools.join2(`
`618`	`618`	`dir_to_save[index],`
`619`	`619`	`basename + "_series_" + str(series).zfill(pad_number),`
`620`	`620`	`)`