From 34b75478d3f3a7a29990ee16942eeaca4bca9e1f Mon Sep 17 00:00:00 2001 From: Ivan Semenov Date: Sun, 1 May 2022 22:06:31 +0300 Subject: [PATCH 1/2] add hw on parallel programming --- hw14/code/parallel.ipynb | 3242 ++++++++++++++++++++++++++++++++++++++ hw14/code/parallel.py | 104 ++ hw14/requirements.txt | 2 + 3 files changed, 3348 insertions(+) create mode 100644 hw14/code/parallel.ipynb create mode 100644 hw14/code/parallel.py create mode 100644 hw14/requirements.txt diff --git a/hw14/code/parallel.ipynb b/hw14/code/parallel.ipynb new file mode 100644 index 0000000..edbc364 --- /dev/null +++ b/hw14/code/parallel.ipynb @@ -0,0 +1,3242 @@ +{ + "cells": [ + { + "cell_type": "code", + "execution_count": 1, + "id": "b92c0775", + "metadata": { + "ExecuteTime": { + "end_time": "2022-04-27T18:34:16.427171Z", + "start_time": "2022-04-27T18:34:16.316291Z" + } + }, + "outputs": [], + "source": [ + "from collections import Counter\n", + "import multiprocessing\n", + "from Bio import SeqIO" + ] + }, + { + "cell_type": "code", + "execution_count": 2, + "id": "b8a843a1", + "metadata": { + "ExecuteTime": { + "end_time": "2022-04-27T18:34:16.925819Z", + "start_time": "2022-04-27T18:34:16.903333Z" + } + }, + "outputs": [], + "source": [ + "class SeqCounter:\n", + "\n", + " def __init__(self, path_to_file, threads):\n", + " '''\n", + " Constructor\n", + "\n", + " :param path_to_file: str, path to FASTA file\n", + " :param threads: int, number of processes to run in parallel\n", + " '''\n", + "\n", + " self.path_to_file = path_to_file\n", + " self.threads = threads\n", + "\n", + " def __str__(self):\n", + " '''\n", + " Represents the class objects as a string\n", + " '''\n", + "\n", + " return \"Path to the file: {}\\nNumber of threads: {}\".format(self.path_to_file, self.threads)\n", + "\n", + " def count_letters(self, id_, seq):\n", + " '''\n", + " Counts number of letters in a sequence and outputs these counts with sequence name\n", + "\n", + " :param id_: str, name of the FSTA sequence\n", + " :param seq: FASTA sequence\n", + " '''\n", + "\n", + " counts_dict = dict(Counter(seq))\n", + " counts_list = [k + '=' + str(v) for k, v in counts_dict.items()]\n", + " counts_str = ', '.join(counts_list)\n", + " print(f'{id_}:', counts_str)\n", + "\n", + " def output_results(self):\n", + " '''\n", + " Reads FASTA file, counts letters in each sequence and outputs results\n", + " '''\n", + "\n", + " processes = []\n", + " records = SeqIO.parse(self.path_to_file, \"fasta\")\n", + " for record in records:\n", + " if len(processes) == self.threads:\n", + " for process in processes:\n", + " process.start()\n", + " for process in processes:\n", + " process.join()\n", + " processes = []\n", + " processes.append(multiprocessing.Process(target=self.count_letters, args=(record.id, record.seq)))\n", + " if len(processes) > 0:\n", + " for process in processes:\n", + " process.start()\n", + " for process in processes:\n", + " process.join()" + ] + }, + { + "cell_type": "code", + "execution_count": 3, + "id": "001b4681", + "metadata": { + "ExecuteTime": { + "end_time": "2022-04-27T18:53:48.403184Z", + "start_time": "2022-04-27T18:34:17.765142Z" + } + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Path to the file: ../data/GRCh38_latest_genomic.fna\n", + "Number of threads: 1\n", + "NC_000001.11: N=18475408, t=25922550, a=25810086, c=16788841, g=16855483, C=31266202, G=31256045, T=41321614, A=41260191, M=1, R=1\n", + "NT_187361.1: G=21162, A=27812, T=28097, C=22678, g=14746, t=22941, a=22589, c=15030\n", + "NT_187362.1: A=3698, G=2858, T=3012, C=2663, t=4874, c=4118, a=6741, g=4068\n", + "NT_187363.1: g=15374, a=21515, t=22087, c=14581, G=11355, C=11061, T=16322, A=15387\n", + "NT_187364.1: g=6917, a=13516, t=14842, c=8228, G=4664, A=6616, T=7146, C=4931\n", + "NT_187365.1: A=6892, C=4131, T=7573, G=4071, t=6280, g=3102, c=3019, a=5108\n", + "NT_187366.1: t=4163, g=2926, a=4770, c=3071, C=6163, T=7662, A=7516, G=5939\n", + "NT_187367.1: G=23619, A=25329, T=25118, C=22712, a=22014, g=16992, t=23518, c=16741\n", + "NT_187368.1: G=7661, A=7857, C=7266, T=7459, g=2249, c=2243, a=3157, t=2853\n", + "NT_187369.1: C=8914, T=6771, A=6735, a=2757, g=2497, t=2655, c=2626, G=8762\n", + "NC_000002.12: N=1645292, C=32288347, G=32342686, T=45192543, A=45077416, t=26795389, c=16029833, a=26713797, g=16108217, Y=4, R=1, W=2, K=1, M=1\n", + "NT_187370.1: G=322, A=306, T=398, C=228, a=47274, c=27078, g=34482, t=51383\n", + "NT_187371.1: G=824, A=937, T=1236, C=690, a=43917, c=25879, t=48901, g=31415\n", + "NC_000003.12: N=195417, c=13660493, t=23098663, a=22956666, A=36732425, C=25572990, T=36734639, g=13759689, G=25584570, R=1, Y=3, W=2, B=1\n", + "NT_167215.1: G=16346, A=24462, T=24491, C=16092, g=13806, a=23453, c=13794, t=22953\n", + "NC_000004.12: N=461888, a=23144996, c=13003496, t=23171273, g=13090368, T=35452157, A=35416240, C=23233480, G=23240657\n", + "NT_113793.3: g=20528, a=31193, t=30113, c=18348, G=21940, T=31998, A=32240, C=23349\n", + "NC_000005.10: N=272881, t=21565326, a=21366327, c=12610126, T=33389684, A=33332767, C=23121474, G=23153233, g=12726441\n", + "NT_113948.1: g=15802, a=27709, t=27480, c=17433, A=1470, T=1122, C=936, G=737\n", + "NC_000006.12: N=727456, G=21987186, A=31652686, T=31697422, C=21955005, c=11691685, a=19692791, t=19675603, g=11726144, Y=1\n", + "NC_000007.14: N=375838, c=11811170, t=18954841, a=18791911, A=28266337, T=28260199, C=20506814, G=20482778, g=11896081, R=1, Y=2, S=1\n", + "NC_000008.11: N=370500, G=19168338, C=19190509, A=26893423, T=26846852, t=16453794, a=16440107, g=9935449, c=9839664\n", + "NC_000009.12: N=16604164, t=13939089, a=13877112, c=8721401, T=21844659, A=21859217, C=16378410, G=16380119, g=8790543, R=1, Y=2\n", + "NT_187372.1: T=5911, A=5976, C=4261, G=4721, c=3599, t=5785, a=6132, g=3677\n", + "NT_187373.1: A=6658, G=4309, T=7030, C=4473, t=5151, c=3049, g=2841, a=4543\n", + "NT_187374.1: G=22370, A=32965, T=33188, C=22477, t=20847, g=11244, c=11257, a=22497\n", + "NT_187375.1: G=4228, C=4135, T=6279, A=6457, t=5637, a=5942, c=3236, g=3136\n", + "NC_000010.11: N=534424, c=9395745, t=14885616, a=14762774, C=18243760, T=24141939, A=24113152, G=18251419, g=9468557, R=13, Y=8, W=6, M=3, K=4, B=1, S=1\n", + "NC_000011.10: N=552880, G=18315306, A=24027062, T=24071077, t=15290877, c=9610266, a=15259668, g=9666495, C=18292991\n", + "NC_000012.12: N=137490, c=9998381, t=15837633, a=15747193, A=23622916, C=17094423, T=23654592, g=10092690, G=17089988, Y=2, M=1\n", + "NC_000013.11: N=16381200, a=11492777, g=6529855, c=6433785, t=11548295, G=12403750, C=12405407, T=18614422, A=18554834, Y=2, K=1\n", + "NC_000014.9: N=16475569, a=10499993, g=6675322, c=6580854, t=10651102, G=11883711, C=11842904, T=16260841, A=16173422\n", + "NT_113796.3: G=23733, A=32705, T=32920, C=22393, t=28513, a=26775, g=17462, c=17208\n", + "NT_167219.1: G=31699, A=31839, T=31467, C=31071, t=22132, g=20001, c=17860, a=25104\n", + "NT_187377.1: G=19059, A=27849, T=27822, C=18953, a=30680, g=20466, t=29753, c=19468\n", + "NT_113888.1: G=25707, A=30293, T=30294, C=25751, t=25399, g=15599, a=22656, c=15770\n", + "NT_187378.1: c=2127, a=3758, g=2191, t=3284, A=7179, G=6531, C=6438, T=6607\n", + "NT_187379.1: C=6659, A=6980, G=6696, T=7506, g=2129, c=2272, t=3822, a=3491\n", + "NT_187380.1: G=19392, A=28449, T=28531, C=19184, g=13431, t=25920, a=24301, c=13602\n", + "NT_187381.1: G=6803, C=6597, T=8296, A=8046, a=4049, c=2514, t=4796, g=2638\n", + "NC_000015.10: N=17349864, C=11569843, T=15013059, A=15007333, G=11568711, g=6257192, a=9501336, c=6183098, t=9540753\n", + "NT_187382.1: g=28734, a=50914, t=55833, c=28315, A=82991, G=58583, T=83411, C=59467\n", + "NC_000016.10: N=8532401, t=9119330, a=8971957, c=6551766, g=6618326, C=11620976, A=13586362, T=13655576, G=11681650, R=1\n", + "NT_187383.1: G=176864, A=216050, T=215669, C=173704, a=248289, g=148705, t=241862, c=151616, N=300000\n", + "NC_000017.11: N=337225, G=11569134, A=13167682, T=13189069, C=11599860, t=9516192, c=7124084, g=7282366, a=9471817, R=3, S=1, K=2, Y=5, W=1\n", + "NT_113930.2: g=16145, a=25966, t=23695, c=15239, C=22980, A=29941, T=28838, G=22787\n", + "NT_187384.1: C=9594, A=15653, T=16093, G=10755, t=65463, g=48452, c=31668, a=71804, N=11357\n", + "NT_187385.1: G=3874, C=2173, T=3989, A=5147, t=19894, a=35152, g=29960, c=6393, N=5969\n", + "NC_000018.10: N=283680, c=5602002, t=9668263, a=9568172, T=14514556, A=14482508, C=10192453, G=10212102, g=5849549\n", + "NC_000019.10: N=176858, G=7823665, A=7768730, T=7771954, C=7793330, t=7510799, a=7373563, c=6161250, g=6237467\n", + "NC_000020.11: N=499910, T=11065170, G=9260186, C=9219090, A=10965321, c=4697043, t=7001236, g=4834286, a=6901925\n", + "NC_000021.9: N=6621361, g=2981169, a=4844675, t=4866512, c=2936147, A=6975989, C=5249097, G=5245212, T=6989818, M=2, R=1\n", + "NC_000022.11: N=11658686, G=5863266, A=6011399, T=6004578, C=5860725, a=4370815, c=3299927, t=4366147, g=3382920, R=2, W=1, Y=2\n", + "NT_187386.1: A=25361, C=25099, T=27201, G=26924, c=9816, a=12886, t=13367, g=10100\n", + "NT_187387.1: T=6226, A=6067, G=4018, C=3877, c=3665, a=7831, t=5984, g=3875\n", + "NT_187388.1: G=27910, A=25475, T=27126, C=28004, t=23859, g=13247, a=17703, c=16448\n", + "NT_187390.1: a=6823, t=7691, c=4552, g=2831, T=6224, C=4072, A=6484, G=4134\n", + "NT_187391.1: g=46760, a=38768, t=25544, c=4872, T=14082, G=15083, A=16456, C=8072, N=12283\n", + "NT_187392.1: C=3135, A=4651, T=4841, G=3020, c=17576, a=27067, g=14104, t=29033, N=411\n", + "NT_187393.1: a=29171, t=20158, c=11808, g=15336, C=3679, T=5358, A=6371, G=3939, N=3555\n", + "NT_187394.1: c=12622, t=21424, g=13238, a=22118, C=605, G=547, T=964, A=905, N=1562\n", + "NC_000023.11: N=1147861, c=12709203, t=21154624, a=21011311, G=17848997, A=25743496, T=25762077, C=17814577, g=12848744, Y=2, R=1, S=1, W=1\n", + "NC_000024.10: N=30812367, c=2259941, t=3647964, a=3591504, G=3035689, A=4294688, T=4308204, C=3025848, g=2251205, Y=2, R=1, S=1, W=1\n", + "NT_187395.1: t=11200, a=7176, g=7574, c=6292, G=1182, T=1778, C=940, A=1098\n", + "NT_187396.1: t=652, g=480, a=610, c=418, G=24, T=32, C=24, A=34\n", + "NT_187397.1: t=608, c=457, g=388, a=702, G=4, A=4, T=2\n", + "NT_187398.1: G=9, A=9, C=11, T=9, a=614, g=343, t=544, c=403\n", + "NT_187399.1: T=23, t=421, g=315, c=272, a=389, A=28, G=10, C=14\n", + "NT_187400.1: c=1341, a=1765, g=1144, t=1664, T=84, G=59, A=87, C=64, N=15268\n", + "NT_187401.1: G=56, C=62, A=83, T=81, c=790, g=932, t=1230, a=1182\n", + "NT_187402.1: g=219, a=398, t=330, c=254\n", + "NT_187403.1: g=290, t=454, c=243, a=397, G=13, T=16, A=22, C=9\n", + "NT_187404.1: T=16, G=8, A=8, t=724, c=397, a=657, g=461, C=5\n", + "NT_187405.1: g=171, a=336, t=291, c=200\n", + "NT_187406.1: a=847, g=613, t=962, c=521, N=9433, A=7, G=7, C=5, T=4\n", + "NT_187407.1: g=622, t=1030, a=1176, c=743, G=15, A=16, T=14, C=8, N=34066\n", + "NT_187408.1: a=387, g=201, t=308, c=227, C=15, T=11, A=20, G=10\n", + "NT_187409.1: G=7, A=15, T=8, t=739, g=454, a=887, c=527, C=9\n", + "NT_187410.1: t=828, a=676, c=432, g=483, T=30, G=13, C=12, A=15\n", + "NT_187411.1: g=188, c=186, a=288, t=304, C=9, A=18, G=19, T=17\n", + "NT_187412.1: T=27, C=23, G=14, A=26, g=406, c=412, a=629, t=608\n", + "NT_187413.1: t=619, c=455, a=653, g=405, T=56, A=52, C=45, G=36\n", + "NT_187414.1: T=46, C=29, A=45, G=31, a=637, t=625, c=351, g=376\n", + "NT_187415.1: A=52, a=603, c=315, t=602, g=374, C=17, G=38, T=42\n", + "NT_187416.1: A=31, t=398, c=276, a=415, g=264, C=25, T=21, G=15\n", + "NT_187417.1: A=10, G=14, T=20, C=7, g=184, a=271, c=184, t=291\n", + "NT_187418.1: g=375, t=550, c=310, a=540, G=27, A=32, T=31, C=19\n", + "NT_187419.1: C=9, G=7, T=16, t=459, c=220, a=371, g=266, A=13\n", + "NT_187420.1: a=95585, t=77479, g=65178, c=43975, T=23248, G=21960, C=18922, A=24682, N=21032\n", + "NT_187421.1: c=74, a=306, g=130, t=448, A=78, C=28, T=124, G=45\n", + "NT_187422.1: g=283, a=562, t=520, c=364, C=8, A=13, G=10, T=14\n", + "NT_187423.1: g=495, a=1021, c=267, t=1442, C=76, A=203, T=303, G=113\n", + "NT_187424.1: A=1342, T=1469, t=28404, c=14951, a=27442, g=17358, G=1027, C=909, N=81\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "NT_187425.1: T=2226, C=1018, G=2566, A=3253, c=7458, t=18034, a=27731, g=21725, N=28494\n", + "NT_187426.1: T=62, C=24, G=46, A=48, a=1209, t=1255, c=650, g=761\n", + "NT_187427.1: a=723, t=751, c=368, g=454, A=25, C=21, T=47, G=26\n", + "NT_187428.1: A=67, T=39, G=38, g=323, a=706, t=674, c=428, C=43\n", + "NT_187429.1: T=35, A=21, G=21, C=19, g=420, a=649, t=690, c=331\n", + "NT_187430.1: C=26, T=35, a=339, g=392, t=748, c=373, G=22, A=16\n", + "NT_187431.1: A=17, T=16, a=392, t=403, c=203, g=250, G=6, C=13\n", + "NT_187432.1: A=315, G=166, C=207, T=262, g=4248, c=4146, a=6432, t=6913\n", + "NT_187433.1: t=41152, g=25338, a=41758, c=22565, C=1300, A=1883, T=2123, G=1549, N=458\n", + "NT_187434.1: a=1789, g=881, t=1612, c=1105, C=54, T=94, A=87, G=52\n", + "NT_187435.1: c=1533, a=2600, g=1307, t=2395, A=104, G=47, C=68, T=73\n", + "NT_187436.1: G=93, A=90, C=73, T=148, t=2000, a=1864, c=950, g=1143\n", + "NT_187437.1: t=1623, c=790, g=974, a=1487, C=91, T=148, G=110, A=130\n", + "NT_187438.1: a=1055, g=497, t=968, c=630, C=23, T=27, A=37, G=16\n", + "NT_187439.1: c=398, t=544, g=307, a=578, G=11, A=23, C=22, T=16\n", + "NT_187440.1: T=124, C=65, G=50, A=78, c=577, a=625, t=1099, g=365\n", + "NT_187441.1: t=693, a=610, c=377, g=438, C=16, T=12, G=9, A=13\n", + "NT_187442.1: G=7, C=10, c=379, a=107, g=394, t=91, T=2, A=3\n", + "NT_187443.1: c=11402, t=17396, g=11075, a=18985, C=905, T=1436, A=1449, G=979, N=27682\n", + "NT_187444.1: c=271, t=345, g=199, a=378, A=6, G=2, T=1\n", + "NT_187445.1: C=1, T=2, G=2, A=2, a=472, g=340, t=492, c=288\n", + "NT_187446.1: C=25, A=62, T=60, G=28, t=274, a=502, g=230, c=219\n", + "NT_187447.1: t=868, a=952, c=575, g=478, A=37, G=17, T=22, C=20\n", + "NT_187448.1: g=324, t=626, a=328, c=260, C=4, A=3, G=2, T=6\n", + "NT_187449.1: A=354, G=175, C=204, T=245, c=1251, a=2363, g=1187, t=1267\n", + "NT_187450.1: g=4653, c=5574, a=9241, t=8843, A=849, T=851, G=501, C=521\n", + "NT_187451.1: G=422, T=766, a=10475, t=10207, c=6989, g=5328, A=658, C=551, N=9078\n", + "NT_187452.1: c=873, t=1339, a=1453, g=715, C=77, T=62, G=51, A=115\n", + "NT_187453.1: a=1397, t=1373, g=707, c=833, A=58, T=53, G=44, C=48\n", + "NT_187454.1: G=232, c=1062, t=2054, a=1126, g=1047, C=225, A=313, T=445\n", + "NT_187455.1: t=1842, g=1025, a=1919, c=1070, A=87, G=54, C=70, T=91\n", + "NT_187456.1: a=888, t=972, c=478, g=598, G=25, A=23, C=18, T=39\n", + "NT_187457.1: a=1699, g=782, t=1650, c=1240, C=123, T=119, G=50, A=133\n", + "NT_187458.1: A=316, T=360, C=413, G=255, t=134, c=95, a=51, g=28\n", + "NT_187459.1: T=2, g=173, t=297, c=216, a=348, A=3, G=1\n", + "NT_187460.1: a=313, t=366, c=202, g=247, G=53, A=72, T=69, C=46\n", + "NT_187461.1: C=94, A=254, a=964, g=211, t=683, c=287, T=148, G=58\n", + "NT_187462.1: A=54, C=38, G=43, T=57, c=146, a=245, t=266, g=199\n", + "NT_187463.1: G=59, A=90, T=81, C=54, a=310, g=257, t=366, c=211\n", + "NT_187464.1: c=215, t=383, g=284, a=366, A=46, T=57, C=35, G=42\n", + "NT_187465.1: a=387, c=121, t=262, g=78, A=77, C=30, T=48, G=23\n", + "NT_187466.1: C=44, A=106, G=22, T=74, t=265, a=390, g=89, c=131\n", + "NT_187467.1: t=771, c=312, a=334, g=373, T=5, G=5, C=2, A=1\n", + "NT_187468.1: a=934, c=539, t=792, g=437, G=30, A=59, C=28, T=36\n", + "NT_187469.1: t=1008, c=640, g=544, a=1089, T=67, C=53, A=90, G=39\n", + "NT_187470.1: C=100, G=70, A=126, T=107, a=2577, g=1310, c=1527, t=2503\n", + "NT_187471.1: A=9, a=306, g=208, t=317, c=185, G=7, C=7, T=9\n", + "NT_187472.1: a=442, g=171, c=225, t=207\n", + "NT_187473.1: g=268, a=400, t=415, c=215\n", + "NT_187474.1: t=760, a=727, c=401, g=471, A=12, G=6, T=5, C=5\n", + "NT_187475.1: t=495, g=305, a=483, c=253, G=1\n", + "NT_187476.1: c=229, a=378, t=342, g=194\n", + "NT_187477.1: a=603, t=569, c=391, g=310, A=3, T=2, C=2\n", + "NT_187478.1: c=197, a=364, t=402, g=253\n", + "NT_187479.1: a=296, g=196, t=315, c=163\n", + "NT_187480.1: g=297, c=363, t=533, a=584, C=4, A=5, T=1, G=1\n", + "NT_187481.1: a=470, c=292, t=462, g=260\n", + "NT_187482.1: c=364, t=522, a=567, g=297\n", + "NT_187483.1: g=228, t=382, c=263, a=429, C=3, T=1, A=1, G=1\n", + "NT_187484.1: t=500, c=338, a=543, g=277\n", + "NT_187485.1: a=281, t=330, g=199, c=156, T=3, C=1, G=1\n", + "NT_187486.1: C=23, A=22, T=16, G=14, c=370, a=595, g=323, t=567\n", + "NT_187487.1: t=310, c=166, a=299, g=188, C=3, T=8, A=7, G=9\n", + "NT_187488.1: t=1354, a=1281, c=711, g=842, T=11, A=7, G=3, C=6\n", + "NT_187489.1: a=354, t=330, c=222, g=173, A=20, G=9, C=12, T=16\n", + "NT_187490.1: g=526, a=751, t=877, c=419, G=18, A=32, C=12, T=21\n", + "NT_187491.1: g=258, c=314, a=560, t=476, T=11, A=15, C=8, G=8\n", + "NT_187492.1: a=362, c=249, t=485, g=298, C=8, T=24, A=16, G=9\n", + "NT_187493.1: c=440, a=774, g=373, t=688, A=36, G=20, T=23, C=24\n", + "NT_187494.1: g=528, a=790, c=449, t=880, G=32, T=55, A=39, C=32\n", + "NT_187495.1: A=640, g=1167, a=1884, t=1951, c=996, C=341, G=471, T=542\n", + "NT_187496.1: A=603, T=523, G=451, g=1183, t=1774, a=1720, c=1046, C=342\n", + "NT_113901.1: G=25983, A=32929, T=33305, C=25579, t=21752, c=11442, a=20540, g=11366\n", + "NT_167213.1: G=19986, A=27656, T=27601, C=19370, t=25458, g=16122, c=16131, a=26874\n", + "NT_167214.1: G=25585, A=22327, T=24283, C=25678, a=14903, t=21872, c=15042, g=12112\n", + "NT_167218.1: G=18639, A=22762, T=23297, C=17362, a=27486, t=28363, c=20068, g=21716\n", + "NT_187497.1: g=18817, t=25908, c=18340, a=25541, A=19312, G=14429, T=18841, C=14432, N=1812\n", + "NT_167220.1: g=3231, a=4502, t=4649, c=2626\n", + "NT_167208.1: G=22526, A=29729, T=29069, C=23110, a=18318, t=19946, g=10820, c=10721\n", + "NT_187498.1: G=23530, A=30404, T=31184, C=25066, c=20384, t=30166, a=30123, g=19801\n", + "NT_187499.1: G=23945, A=31203, T=29650, C=23845, t=17364, g=11619, a=19367, c=11479\n", + "NT_187500.1: G=5425, A=5627, T=6061, C=5398, a=4855, g=4287, t=5484, c=4754\n", + "NT_187501.1: G=7168, A=12865, T=11833, C=7158, t=8482, c=4396, a=9860, g=4724\n", + "NT_187502.1: G=5880, A=7622, T=9019, C=6215, c=30406, a=49846, t=58180, g=31567\n", + "NT_187503.1: g=8619, a=11759, t=12142, c=10307, G=11863, T=14081, C=11404, A=13146\n", + "NT_187504.1: G=17884, A=26745, T=27613, C=18210, t=20908, g=11849, c=10908, a=24642\n", + "NT_187505.1: G=21648, A=27820, T=29588, C=19901, a=13937, g=9226, t=17445, c=9285\n", + "NT_187506.1: G=14807, A=22997, T=23678, C=14633, a=23051, c=13913, t=23562, g=14101\n", + "NT_187508.1: G=10496, A=13691, C=9908, T=12512, c=2968, t=4507, g=3495, a=5367\n", + "NT_187509.1: G=9460, C=9470, A=7955, T=7334, g=1532, c=1473, t=1097, a=1870\n", + "NT_187510.1: T=7098, A=6702, C=5116, G=5283, g=2656, t=3918, a=3599, c=2351\n", + "NT_187511.1: a=15128, c=22568, g=5074, t=28939, A=1754, C=2172, T=3108, G=781, N=66\n", + "NT_187512.1: G=744, T=1015, A=1154, c=10046, t=18245, g=11311, a=18629, C=707, N=9400\n", + "NT_167209.1: G=16447, A=20710, T=20349, C=14963, c=12521, t=19542, a=19935, g=13251\n", + "NT_187513.1: G=20091, A=29586, T=30031, C=19458, a=27353, c=16483, t=27453, g=16284\n", + "NT_167211.2: c=33659, a=26477, t=42902, g=13759, A=15750, T=17305, C=14400, G=12120, N=236\n", + "NT_113889.1: G=20430, A=25697, T=25901, C=20062, a=20333, c=13234, t=22146, g=13344\n", + "NW_012132914.1: T=73335, C=63977, G=63496, A=72771, g=42795, c=42977, a=53524, t=54268\n", + "NW_015495298.1: G=38466, A=43933, T=44635, C=38387, g=25207, t=32084, a=30952, c=24995\n", + "NW_025791756.1: g=124667, a=150112, t=151157, c=124447, G=256685, T=254754, C=256170, A=254694\n", + "NW_011332688.1: C=51383, A=48885, G=52585, T=47437, c=24357, t=26916, a=28635, g=25344\n", + "NW_014040926.1: G=46272, A=55835, T=53274, c=33911, g=33383, t=37584, a=40236, C=49443\n", + "NW_009646195.1: a=21757, c=20849, g=20301, T=21129, C=18342, A=20547, t=23448, G=19827\n", + "NW_018654706.1: C=15846, T=20031, A=19506, G=15709, t=25256, g=22104, a=25212, c=22472\n", + "NW_019805487.1: A=8659, T=9530, C=8803, G=9559, g=1677, t=2253, a=2426, c=2048\n", + "NW_009646194.1: C=35453, A=32348, G=36974, T=35487, a=11448, t=14514, g=10687, c=9583\n", + "NW_018654707.1: G=13887, T=24663, A=23634, C=13578, a=20280, c=10730, t=22809, g=10774\n", + "NW_014040925.1: T=27323, A=25106, G=15259, C=14557, t=22355, g=9260, c=9169, a=17990\n", + "NW_017852928.1: c=44371, t=70186, g=42567, a=73273, A=95874, G=64811, C=68294, T=91644\n", + "NW_009646196.1: C=12757, A=18864, T=18271, G=11956, a=17274, c=13320, t=15965, g=13615\n", + "NW_025791753.1: G=69864, a=57375, t=56427, c=35704, g=36040, A=94902, C=70244, T=96208\n", + "NW_025791758.1: A=36107, T=34932, t=16709, c=16000, a=17711, g=16344, G=36661, C=37470\n", + "NW_025791759.1: A=43556, T=43191, G=27737, C=28590, a=37603, g=18963, t=31978, c=18829\n", + "NW_025791754.1: t=108178, c=51547, a=108905, g=52199, T=164625, C=96185, A=168157, G=94754, N=2891\n", + "NW_011332687.1: C=66880, A=84402, G=73144, T=92882, a=39108, t=47306, g=28337, c=28041\n", + "NW_018654708.1: G=56661, T=48755, C=52890, A=47070, g=30111, t=31902, a=34272, c=28370\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "NW_014040927.1: C=22751, A=30801, t=30766, a=26696, g=23089, c=23161, T=31950, G=22991\n", + "NW_025791757.1: a=24676, g=19251, t=25998, c=18793, C=28351, A=32322, T=32325, G=28710\n", + "NW_025791755.1: C=45644, A=67694, T=66791, G=46170, g=17752, a=36600, t=36502, c=18006\n", + "NW_021159988.1: A=13976, G=12540, T=14942, C=11771, t=10790, a=9574, g=5364, c=5086\n", + "NW_025791767.1: C=36162, T=51882, A=47681, G=37613, g=12986, c=12333, a=20691, t=25377\n", + "NW_025791768.1: g=7921, a=15886, t=16989, c=7657, T=39046, G=24933, A=37753, C=24200\n", + "NW_025791766.1: G=59027, A=80785, T=84361, C=58737, a=58391, g=40779, c=40772, t=66552\n", + "NW_025791763.1: g=23599, a=28462, t=29651, c=23383, A=46433, G=43645, T=48290, C=41508\n", + "NW_012132915.1: A=93127, C=69342, T=94831, G=69509, a=50921, t=48691, g=29103, c=25721\n", + "NW_025791760.1: G=73364, A=81650, T=82628, C=72790, t=37400, g=23432, a=36354, c=24164\n", + "NW_025791765.1: G=132340, A=176795, T=172603, C=132484, a=108360, g=63779, c=63456, t=105270\n", + "NW_018654709.1: G=23997, A=38371, T=35083, C=24916, g=10019, t=18087, c=9985, a=21200\n", + "NW_025791762.1: A=89684, G=74876, C=79596, T=84359, a=51805, t=48952, g=35882, c=35427\n", + "NW_025791761.1: C=58970, T=89435, G=58735, A=88645, t=73749, g=48843, c=48820, a=68054\n", + "NW_025791764.1: A=24951, T=25722, G=14618, C=15016, g=6325, a=13762, t=13751, c=6236\n", + "NW_015495299.1: A=85907, T=83288, G=60503, C=59450, g=52799, t=70420, c=52844, a=69877\n", + "NW_018654710.1: g=13223, a=19067, t=18216, c=13735, A=21446, G=15779, T=22134, C=16761\n", + "NW_011332690.1: A=59915, G=60619, C=56416, T=63942, t=35852, g=28649, a=32489, c=27617\n", + "NW_021159987.1: C=27199, G=28528, T=27699, A=27473, c=7314, t=9705, g=7341, a=10716\n", + "NW_011332689.1: G=40708, A=38058, T=36924, C=40791, g=10080, c=11833, t=14525, a=15230\n", + "NW_017363813.1: T=82617, A=78470, G=58394, C=55118, t=46668, c=25087, g=24142, a=41158\n", + "NW_025791770.1: A=39983, C=29923, G=32530, T=43439, g=35401, t=44129, c=35465, a=40440\n", + "NW_025791771.1: G=82783, C=77500, T=97230, A=91720, g=25146, t=39925, c=25442, a=36130\n", + "NW_009646197.1: C=59597, T=78869, A=76628, G=61762, t=51649, a=50051, c=35868, g=36744\n", + "NW_012132916.1: C=47014, T=69538, A=65502, G=48514, a=39523, c=28484, t=46275, g=28849\n", + "NW_011332691.1: G=62929, A=79920, T=74857, C=66078, g=28096, c=28198, t=36343, a=38887\n", + "NW_021159989.1: c=20327, t=26186, a=25773, g=21352, A=32248, G=29716, C=27879, T=31962\n", + "NW_018654711.1: C=18922, A=31479, G=18905, T=30883, c=13216, t=24463, a=24420, g=13561\n", + "NW_012132917.1: A=4763, T=3585, a=52517, t=46122, c=29003, g=24682, C=2920, G=2126\n", + "NW_009646198.1: t=48412, g=27493, c=29120, a=49913, C=25792, G=23544, A=41878, T=38700, N=21127\n", + "NW_019805491.1: C=11471, T=21336, A=20303, G=11921, g=6111, c=6055, a=13233, t=15097\n", + "NW_019805492.1: C=20409, A=30990, T=32619, G=21213, g=16203, t=30937, a=26834, c=15858\n", + "NW_019805490.1: a=16910, t=20154, c=12373, g=11704, T=62593, G=62946, A=56467, C=59738\n", + "NW_019805489.1: A=40021, T=41578, G=23788, c=10998, a=21814, g=11155, t=25141, C=23257\n", + "NW_019805488.1: G=18682, A=32126, T=31408, C=18526, a=21881, c=10123, t=20993, g=10302\n", + "NW_025791769.1: G=67878, T=92041, A=90431, C=68984, t=46802, a=46473, g=29021, c=27712\n", + "NW_021159990.1: T=35641, C=53946, A=36370, G=50733, t=16313, g=12643, a=15008, c=15080\n", + "NW_021159993.1: A=32486, C=40615, T=29895, G=40300, c=7199, t=8303, a=9926, g=7950\n", + "NW_013171799.1: G=12091, T=18397, A=18535, C=12240, g=4836, a=10318, c=5055, t=9450\n", + "NW_025791774.1: G=28458, A=40374, T=43829, C=27554, a=19605, g=11785, c=11662, t=22424\n", + "NW_021159992.1: T=8612, A=8685, G=4844, C=4885, c=3699, a=9123, t=9812, g=3816\n", + "NW_021159994.1: t=17666, c=8005, a=18559, g=8047, C=12952, T=23451, A=23446, G=13423\n", + "NW_021159991.1: c=46032, a=46681, g=28353, t=62235, G=35578, C=35947, A=42159, T=44081\n", + "NW_021159995.1: G=28573, A=53043, T=52511, C=28559, g=17450, t=38981, a=39450, c=17542\n", + "NW_013171800.1: G=16601, A=29017, T=30092, C=16228, g=11858, c=11644, t=25604, a=22705\n", + "NW_013171801.1: C=25698, A=44256, T=44762, G=24092, g=15796, t=34383, c=15759, a=31766\n", + "NW_025791772.1: G=32516, A=50072, T=48345, C=33606, a=41854, g=30586, c=30886, t=40817\n", + "NW_017363814.1: G=54973, A=84505, T=82891, C=56768, c=24837, g=24436, t=46006, a=46259\n", + "NW_025791773.1: G=15758, A=24080, C=16618, T=23484, c=5736, a=11037, t=10652, g=5999\n", + "NW_015495301.1: c=15532, t=20849, a=21691, g=12818, A=31790, G=35715, C=36136, T=30873, N=3\n", + "NW_015495300.1: c=17568, t=23989, a=24795, g=15104, A=36117, G=38728, C=38992, T=35141\n", + "NW_025791777.1: c=169191, g=167378, a=256155, t=261102, A=307089, G=196580, C=196859, T=307334, N=239897\n", + "NW_018654712.1: C=22879, T=28858, A=29053, G=23011, a=10666, g=5537, c=5739, t=10244\n", + "NW_025791776.1: T=40928, G=37786, C=38962, A=42608, c=9955, t=13885, a=14669, g=9612\n", + "NW_009646199.1: T=23877, C=13438, G=14136, A=23981, t=19095, a=22511, c=11175, g=10874\n", + "NW_016107297.1: g=30155, a=46171, t=50132, c=30018, T=62406, G=43857, C=41357, A=58125\n", + "NW_025791779.1: C=33971, T=57337, G=33947, A=57860, c=19507, g=19684, a=39456, t=40723\n", + "NW_021159996.1: A=13230, C=12289, T=13334, G=12497, g=9342, a=9887, t=10874, c=8503\n", + "NW_025791778.1: A=96012, C=69075, T=98971, G=71656, t=58983, a=52313, g=30848, c=30474\n", + "NW_016107298.1: T=100525, G=111015, A=104968, C=113442, g=58446, c=57873, a=63423, t=63367\n", + "NW_025791775.1: C=4165, T=5212, G=4631, g=4142, a=3570, c=3103, t=4585, A=4992\n", + "NW_018654713.1: A=38548, G=29523, T=40725, C=29678, a=27462, c=22734, g=22865, t=31261\n", + "NW_013171803.1: A=15933, C=11612, G=11471, T=16901, t=8381, g=4866, a=8039, c=5112\n", + "NW_025791780.1: c=24902, a=39369, t=38689, g=24805, G=54148, A=74067, T=73341, C=53807\n", + "NW_012132918.1: G=17887, A=27899, T=28057, C=17630, c=39481, t=75794, g=43434, a=70568\n", + "NW_009646200.1: G=26127, A=47235, T=48188, C=27117, g=19437, a=38276, t=43387, c=18563\n", + "NW_013171802.1: A=41543, T=40009, G=24551, C=26186, t=33890, a=36766, c=21656, g=21115\n", + "NW_017363815.1: T=19734, C=13929, A=18878, G=14714, c=16492, t=21144, a=18451, g=16085\n", + "NW_021159997.1: A=15199, G=8536, T=15337, C=8661, t=9703, g=3190, a=9074, c=3565\n", + "NW_021159998.1: G=58864, A=46636, T=46073, C=58537, g=10458, a=12586, t=12125, c=9480\n", + "NW_019805493.1: T=32094, C=18356, A=30904, G=18964, a=22523, t=25675, g=11987, c=12052\n", + "NW_025791781.1: G=53905, A=84666, T=83232, C=53958, g=31731, c=31782, a=60802, t=64341\n", + "NW_017852929.1: G=15259, A=21853, T=19551, C=16532, t=18396, g=15494, c=15831, a=19213\n", + "NW_017852930.1: A=90337, G=52420, C=54232, T=83798, t=54553, a=65763, c=34226, g=32938\n", + "NW_018654714.1: G=84014, A=112172, T=113688, C=82335, g=35840, c=35511, a=62430, t=63666\n", + "NW_018654715.1: t=69302, g=43761, a=73199, c=43825, A=133155, G=92241, C=94133, T=131046\n", + "NW_012132919.1: C=26250, A=36140, T=36073, G=26953, a=17174, g=10602, t=16837, c=9903\n", + "NW_025791785.1: C=56915, T=74109, A=76244, G=55053, a=51598, g=34201, c=34384, t=47240\n", + "NW_018654717.1: c=430646, t=615632, g=429981, a=611880, C=974541, A=1166530, G=975372, T=1162846, N=100\n", + "NW_017852932.1: T=51425, G=43238, A=55226, C=46853, a=22624, c=13770, t=19023, g=13717\n", + "NW_025791782.1: T=23330, C=17594, A=21682, G=19275, g=14513, a=18031, t=21834, c=14043\n", + "NW_017852931.1: T=29578, G=19846, g=10963, c=10970, t=19517, a=18685, C=19179, A=28260\n", + "NW_025791784.1: A=21133, C=14527, T=20179, G=15466, g=7540, t=10252, c=7325, a=10483\n", + "NW_019805494.1: T=14027, C=10807, a=17836, t=15558, g=9783, c=9865, G=10542, A=14654\n", + "NW_025791786.1: A=34340, T=36634, G=52778, C=48662, t=9134, g=8337, a=9181, c=8305\n", + "NW_018654716.1: C=37653, T=22312, G=36618, A=23427, g=12079, c=11874, a=10799, t=10358\n", + "NW_025791783.1: a=3611, t=5277, g=4328, c=2865, G=5126, A=6003, C=5523, T=6557\n", + "NW_013171804.1: g=7907, c=8230, t=17033, a=17268, T=35268, A=35786, C=20667, G=21723\n", + "NW_013171805.1: T=23362, C=12904, A=23582, G=13544, c=10149, t=22004, a=18165, g=10389\n", + "NW_025791789.1: G=67792, A=100091, T=100288, C=67371, g=45267, c=44617, a=71723, t=72519\n", + "NW_025791787.1: T=60795, C=47476, A=58048, G=50624, a=34848, g=24724, t=39967, c=24235\n", + "NW_025791788.1: A=82576, G=59284, T=82185, C=58833, t=61127, a=58157, g=40051, c=40037\n", + "NW_009646201.1: A=51874, C=61344, G=62745, T=51365, g=24896, t=26566, c=22879, a=28495\n", + "NW_021159999.1: A=2997, T=3426, G=4197, C=4315, t=2977, g=3384, c=1779, a=2333\n", + "NW_021160000.1: T=49449, C=34354, A=51331, G=38296, g=70587, t=71881, a=99776, c=39289\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "NW_011332694.1: G=25903, A=38812, t=91911, c=52310, a=93253, g=52129, T=39717, C=26129\n", + "NW_021160001.1: T=53258, C=48722, A=53507, G=49300, g=17895, c=17815, t=25482, a=26965\n", + "NW_013171806.1: T=32368, A=33091, G=18965, C=18650, g=13921, t=27336, a=26938, c=14238\n", + "NW_009646202.1: C=35868, T=52353, A=48219, G=38838, c=20934, t=30501, g=22004, a=29080\n", + "NW_013171807.1: C=29978, T=52026, A=48736, G=32091, a=30055, c=18361, g=18661, t=34637\n", + "NW_025791790.1: C=37221, T=36356, A=38053, G=34923, a=14196, g=10732, c=10253, t=14528\n", + "NW_011332693.1: A=15744, C=16581, T=15137, G=15906, a=5863, t=6571, c=4774, g=4708\n", + "NW_011332692.1: C=1508, A=1753, T=2189, G=1288, a=2382, c=1476, g=1166, t=2585\n", + "NW_015148966.2: G=50995, A=33046, T=32944, C=50549, a=9393, t=9115, g=7766, c=11191\n", + "NW_025791792.1: a=27218, g=24714, c=25655, t=27357, T=68765, C=96670, A=69575, G=94877\n", + "NW_021160004.1: G=62235, A=43361, T=46478, C=66517, a=13058, t=13072, c=13194, g=12207\n", + "NW_025791794.1: G=14768, A=24436, T=25408, C=15437, g=6695, a=14170, t=15103, c=6705\n", + "NW_011332695.1: G=21816, A=32816, T=30350, C=21644, g=18243, t=27669, a=33420, c=17594\n", + "NW_021160006.1: t=19821, c=16066, a=20181, g=16054, G=20435, A=28834, T=28452, C=21085\n", + "NW_019805496.1: G=26190, A=36373, t=40734, c=36193, a=42255, g=35753, C=27176, T=34970\n", + "NW_019805495.1: T=59990, C=35259, G=35603, A=57309, t=42455, a=35496, g=19485, c=19647\n", + "NW_017363816.1: T=21711, A=23224, c=12416, a=21189, t=17171, C=16328, G=16024, g=12814\n", + "NW_025791793.1: G=40212, A=67919, T=66716, C=40076, t=41844, g=21906, a=44453, c=21480\n", + "NW_019805498.1: G=20686, A=30636, T=32948, C=19765, t=25677, g=14598, a=22594, c=14263\n", + "NW_021160005.1: T=38032, G=34326, A=32061, C=30763, g=19367, t=23989, c=18504, a=20033\n", + "NW_021160003.1: g=11114, a=23753, t=21739, c=11911, G=18681, T=28764, C=19442, A=30015\n", + "NW_019805497.1: g=23014, a=39431, c=22206, t=44598, A=53070, G=32792, T=54870, C=31656\n", + "NW_013171808.1: G=29116, A=39078, T=42583, C=26364, t=15088, c=7762, a=13887, g=8080\n", + "NW_021160002.1: a=11218, t=9077, c=4535, g=4342, G=3195, T=5280, C=2826, A=4784\n", + "NW_025791791.1: G=32027, A=52553, T=52054, C=31477, t=31198, a=31928, c=14922, g=15035\n", + "NW_009646203.1: A=14393, G=14026, T=13946, C=14004, g=13148, a=12735, c=12960, t=13663\n", + "NW_013171809.1: C=9602, T=18748, G=12343, t=17733, a=13136, c=10074, g=10536, A=17151\n", + "NW_018654718.1: T=214811, G=199712, C=192160, A=204202, c=47431, t=71883, g=48886, a=67753\n", + "NW_021160008.1: g=13477, c=13003, t=18428, a=19571, T=34996, A=32754, C=28864, G=31438\n", + "NW_011332696.1: T=89082, G=61429, C=65429, c=49975, t=65322, g=49191, a=67134, A=93476\n", + "NW_009646204.1: C=18994, T=32303, A=33246, g=19159, t=35161, c=18409, a=35069, G=19036\n", + "NW_025791795.1: C=14775, T=13503, G=14696, A=14002, a=12538, t=11251, c=11761, g=12011\n", + "NW_018654720.1: T=38438, G=20907, A=38181, C=21875, t=19102, c=8687, a=19065, g=8553\n", + "NW_015148967.1: t=46647, a=49917, c=23274, g=21689, A=57114, G=30624, T=55212, C=31133\n", + "NW_018654719.1: A=5861, T=6050, C=6416, G=6496, t=10368, a=9678, c=9952, g=9868\n", + "NW_011332697.1: C=13425, A=11968, G=14105, T=13622, a=8094, g=8073, t=9396, c=7850\n", + "NW_019805499.1: A=28613, G=21231, T=28687, C=21498, c=10647, a=15276, t=17832, g=10355\n", + "NW_021160007.1: t=14914, c=18208, g=13625, a=17844, A=48692, G=65608, C=71472, T=47205\n", + "NW_021160012.1: G=51123, A=66484, C=51872, T=66024, a=54106, t=53255, g=34210, c=32838\n", + "NW_011332699.1: G=48101, A=59310, T=61581, C=48484, g=27602, t=42954, c=28529, a=40205\n", + "NW_013171810.1: t=23738, g=11134, c=10773, a=21699, G=18267, T=32509, C=18542, A=31484\n", + "NW_021160009.1: C=131, T=263, G=138, A=301, a=2612, t=3212, g=274, c=378\n", + "NW_009646205.1: a=4704, t=4923, c=2004, g=1977, A=6788, T=7063, G=3954, C=4042\n", + "NW_011332700.1: C=19964, A=26061, T=28491, G=20557, t=18878, a=14844, c=10065, g=9902\n", + "NW_013171811.1: g=6383, a=11038, c=5965, t=11744, T=26949, C=17664, A=25828, G=17909\n", + "NW_021160010.1: A=31169, T=32543, C=32158, G=31702, c=5874, t=10629, g=6726, a=8143\n", + "NW_021160011.1: A=10985, C=15235, G=16334, T=12285, g=2750, t=3356, c=1990, a=2459\n", + "NW_011332698.1: A=39011, G=50679, C=53227, T=35454, c=7558, t=7128, a=7500, g=5763\n", + "NW_021160013.1: G=50052, T=64277, C=50759, A=64799, t=51695, c=31923, a=52649, g=33029\n", + "NW_025791796.1: A=125115, t=94769, a=99895, c=58948, g=57949, C=83977, T=120189, G=81803\n", + "NW_018654722.1: A=116726, T=114541, G=108403, C=109506, a=71166, g=50666, t=68109, c=51815\n", + "NW_021160014.1: G=28394, A=48760, C=27623, T=49032, t=37176, g=18026, a=36630, c=18587\n", + "NW_018654721.1: G=13211, C=12850, T=19755, A=21495, t=28797, a=30413, c=22478, g=22799\n", + "NW_011332701.1: T=873796, G=716990, A=884485, C=720328, g=353224, t=525633, a=533071, c=354444, N=36991\n", + "NW_021160018.1: G=50220, C=49489, T=64177, A=63661, g=31870, a=51675, t=52420, c=33003\n", + "NW_021160017.1: c=437704, a=652048, t=677619, g=435775, A=926901, C=711545, G=716291, T=942566\n", + "NW_012132920.1: A=187178, C=144338, T=184379, G=143763, a=110816, g=71661, t=111702, c=71501, N=1340026\n", + "NW_025791798.1: C=28603, A=36261, G=27602, t=22494, g=15590, a=22348, c=16746, T=34363\n", + "NW_021160016.1: A=62817, C=71310, G=67230, T=60219, g=25075, a=27996, t=28044, c=26573\n", + "NW_025791797.1: a=118058, g=79091, t=129850, c=79949, A=202713, T=214645, C=163805, G=166463\n", + "NW_021160015.1: t=10518, g=5674, c=5571, a=9105, G=16201, A=17519, T=17939, C=15236\n", + "NW_025791799.1: T=11582, C=19074, A=11691, G=18551, g=6919, t=6743, c=7209, a=5946\n", + "NW_013171812.1: G=11656, T=9042, C=11552, A=9843, c=3853, a=4970, g=4222, t=3878\n", + "NW_019805500.1: T=87804, G=74248, A=90019, C=77052, t=45241, g=31506, a=41803, c=32742\n", + "NW_017852933.1: T=299862, G=237724, C=239986, A=300651, a=235182, c=189257, t=236833, g=187620\n", + "NW_021160019.1: T=45917, A=48467, C=36531, G=38165, t=28256, g=22589, c=21767, a=29275\n", + "NW_013171813.1: T=48425, A=53185, C=39699, G=37661, a=30714, t=24295, c=16740, g=16744\n", + "NW_018654723.1: A=11939, C=13989, T=10292, G=13555, a=8379, c=6920, t=6831, g=6704\n", + "NW_012132921.1: C=19662, A=32053, G=20745, T=33460, a=19883, g=10852, t=21910, c=10571\n", + "NW_025791800.1: A=50714, T=48536, C=43195, G=41650, t=39813, a=42384, g=33883, c=34822\n", + "NW_017363817.1: A=47662, C=40849, T=41917, G=39735, a=30441, g=26684, t=29717, c=24914\n", + "NW_021160020.1: T=17892, C=22495, A=18247, G=22184, g=14206, t=13855, c=14251, a=14778\n", + "NW_016107299.1: A=22008, T=22704, C=28033, G=26662, c=13765, a=13752, g=13657, t=14142\n", + "NW_017363819.1: C=47756, T=42968, G=47541, A=42552, t=24510, g=23186, c=22735, a=25044\n", + "NW_025791803.1: A=85098, T=95479, C=63620, t=71093, g=47464, c=47464, a=61667, G=66656\n", + "NW_025791801.1: T=67762, C=54559, A=69987, G=54723, a=41123, c=22808, g=24159, t=37718\n", + "NW_017363818.1: A=49361, G=31158, C=31002, T=50504, a=27946, t=27648, g=14709, c=14567\n", + "NW_019805501.1: A=22138, G=16317, T=19282, C=17699, a=12966, g=9362, c=8775, t=10214\n", + "NW_025791806.1: t=17008, a=15177, g=13468, c=13541, A=26823, G=29589, T=27714, C=29289\n", + "NW_025791802.1: A=35869, T=34937, C=42682, G=40240, g=18838, c=19838, a=21435, t=21039\n", + "NW_025791805.1: A=26478, T=27490, C=43532, G=44526, a=10736, c=11797, g=12267, t=10800\n", + "NW_021160021.1: c=6056, t=3984, a=5131, g=4968, A=7296, C=11621, G=10960, T=6679\n", + "NW_025791804.1: C=28044, G=31177, T=26860, A=23849, c=7391, t=10616, g=7610, a=9142\n", + "NW_019805503.1: A=30222, C=18180, T=29387, G=17586, t=20601, a=24144, c=11670, g=11396\n", + "NW_014040928.1: C=29037, T=39404, A=40054, G=28916, c=12234, t=20415, g=12074, a=22967\n", + "NW_019805502.1: T=48723, C=39106, G=39259, A=50343, t=17700, c=10131, a=15426, g=10155\n", + "NW_013171814.1: T=78967, C=81651, G=83630, A=75434, t=24995, g=19095, c=19187, a=24428\n", + "NW_018654724.1: A=16097, T=17822, G=13153, a=9301, t=11340, c=6396, C=12102, g=6859\n", + "NW_025791809.1: t=26482, c=21013, g=20568, a=22388, C=29064, A=32538, G=36043, T=38070\n", + "NW_025791810.1: C=13737, A=10328, T=9691, G=14013, g=10040, a=10412, c=11038, t=9952\n", + "NW_025791807.1: T=49890, C=41616, A=49850, G=48635, g=32860, c=32757, a=39798, t=38348\n", + "NW_021160022.1: G=73065, C=71366, T=53323, A=55371, a=60595, c=59505, t=60210, g=59730\n", + "NW_014040929.1: t=48834, g=46681, a=49464, c=47928, G=57858, C=56807, T=49180, A=48637\n", + "NW_025791808.1: a=16459, c=14561, g=14025, t=16369, G=18844, A=18530, T=18439, C=20591\n", + "NW_009646206.1: C=50935, G=49358, A=58508, T=55829, t=44201, a=46043, c=32908, g=33135\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "NW_016107300.1: G=27673, A=29431, T=27726, C=26009, c=10574, g=11796, a=15932, t=14785\n", + "NW_016107301.1: G=28399, A=30259, T=28482, C=26750, c=11186, g=12416, a=16683, t=16029, N=2\n", + "NW_016107302.1: G=28104, A=29842, T=28042, C=26361, c=11099, g=12357, a=16480, t=15846\n", + "NW_016107303.1: G=50813, A=53450, T=50840, C=47675, c=18209, g=20187, a=26716, t=25532, N=100\n", + "NW_016107304.1: G=37159, A=39322, T=37541, C=34984, c=18745, g=21182, a=26334, t=25791\n", + "NW_016107305.1: G=27041, A=28586, T=26859, C=25280, c=10186, g=11464, a=15524, t=14344, N=1\n", + "NW_016107306.1: G=29064, A=31254, T=29608, C=27539, c=12199, g=13263, a=18054, t=17216\n", + "NW_016107307.1: G=27748, A=29527, T=27780, C=26084, c=11025, g=12336, a=16453, t=15760\n", + "NW_016107308.1: G=16218, A=17370, T=16186, C=15424, c=6950, g=7504, a=10591, t=9602\n", + "NW_016107309.1: G=27221, A=28863, T=27185, C=25537, c=10369, g=11660, a=15677, t=14583\n", + "NW_016107310.1: G=38320, A=40423, T=38274, C=36003, c=14294, g=15485, a=20481, t=19838\n", + "NW_016107311.1: G=15642, A=16862, T=15715, C=14973, c=7509, g=7924, a=11086, t=10842\n", + "NW_016107313.1: G=28497, A=30342, T=28580, C=26776, c=11384, g=12602, a=16879, t=16203\n", + "NW_016107314.1: G=24556, A=25930, T=24479, C=22936, c=9443, g=10651, a=14430, t=13260, N=2, R=2, Y=1, W=1\n", + "NW_016107312.1: G=21523, A=23135, T=24384, C=23204, c=15540, a=17992, t=17683, g=13488, N=16\n", + "NW_025791811.1: A=47443, G=33908, T=49326, C=31350, g=22489, t=34861, a=32176, c=22172\n", + "NW_025791812.1: A=50071, T=57895, C=53530, G=53002, g=32439, a=34278, t=41018, c=33498\n", + "NW_021160023.1: T=78487, G=69435, A=77222, C=69870, t=70453, g=44019, a=62662, c=47337\n", + "NW_025791813.1: t=38534, c=25732, g=25280, a=37666, T=64178, G=41850, A=62330, C=41182\n", + "NW_025791814.1: A=206095, T=201452, G=152850, C=154495, t=90468, c=57326, a=100076, g=58016\n", + "NW_025791815.1: G=47772, A=31530, T=32258, C=46168, g=7649, a=8592, t=8276, c=7462\n", + "NW_021160026.1: T=65049, A=66268, C=51668, G=50980, a=55964, t=53450, c=33718, g=35271\n", + "NW_021160024.1: t=97363, g=56477, c=56984, a=100188, A=46669, C=29816, T=43819, G=29987\n", + "NW_009646207.1: a=17107, t=15496, c=13351, g=13334, T=25099, C=23551, A=25995, G=22629\n", + "NW_014040930.1: t=14929, a=16669, c=12900, g=12771, A=26074, C=24358, T=25053, G=23176\n", + "NW_014040931.1: T=29182, A=29713, C=31037, G=29438, a=15734, g=12520, c=12989, t=14136\n", + "NW_009646208.1: C=26490, T=24911, G=24942, A=26029, t=12822, c=11775, a=14652, g=11406\n", + "NW_015148968.1: C=25503, A=24879, T=23644, G=23783, g=10610, c=11109, t=11926, a=13708\n", + "NW_021160025.1: c=1054, t=2273, g=1914, a=1247, C=1399, T=1428, G=1723, A=1257\n", + "NW_015148969.2: g=6297, a=6132, t=8672, c=5964, G=21658, T=17432, A=14902, C=19983\n", + "NW_017363820.1: a=23344, g=12280, c=12774, t=22633, C=21711, T=36585, A=36704, G=21973\n", + "NW_021160031.1: T=1711, A=1899, C=1102, c=835, t=5084, a=4728, g=945, G=1131\n", + "NW_025791820.1: c=36989, a=42536, t=38211, g=37867, C=45384, T=41313, A=43843, G=44350\n", + "NW_021160028.1: A=2583, T=3194, C=1807, t=7291, a=6499, g=2958, c=2536, G=1956\n", + "NW_025791816.1: T=11794, G=8883, C=8977, a=8849, t=8568, c=4912, g=4975, A=11852\n", + "NW_021160029.1: a=11467, t=10251, g=4451, c=4243, A=12273, G=7048, T=11583, C=6876\n", + "NW_025791817.1: T=22365, C=18441, A=23151, G=18095, t=15146, c=13604, a=16247, g=13518\n", + "NW_021160027.1: g=33813, a=50060, t=57239, c=34223, C=46856, T=68110, A=63811, G=49016\n", + "NW_025791819.1: C=31577, T=51020, A=51719, G=31475, c=21805, a=41321, t=42051, g=23151\n", + "NW_021160030.1: t=4032, g=993, c=917, a=4240, T=1564, A=1390, G=770, C=772\n", + "NW_025791818.1: C=96931, T=109814, A=114935, t=59562, c=38699, a=65652, g=38077, G=96046\n", + "NW_018654725.1: t=5016, c=2813, a=4690, g=2832, G=7129, T=10652, C=6108, A=9130\n", + "NW_025791821.1: G=152302, A=174305, T=181962, C=155335, a=64645, c=37704, t=62516, g=36974\n", + "NW_018654726.1: G=30259, A=43619, T=42665, C=30918, t=19520, a=20221, c=11227, g=11293\n", + "NW_009646209.1: C=10008, A=15309, G=9285, T=14843, t=15595, g=8236, c=12058, a=15816\n", + "NT_187515.1: G=63743, T=39325, A=42141, C=65619, t=14366, c=31284, a=24310, g=23656, N=50000\n", + "NT_187517.1: G=35716, A=40962, T=40908, C=36076, g=23297, c=22516, t=27786, a=29010\n", + "NT_187514.1: C=19919, A=19732, G=20105, T=18318, c=6346, t=8009, g=6614, a=10485\n", + "NT_187520.1: C=23276, T=32840, G=23379, A=32577, g=13066, a=22276, t=24079, c=13792\n", + "NW_003315905.1: C=21889, T=24538, A=23831, G=21607, c=21283, t=24459, g=21072, a=23760\n", + "NW_003315906.1: C=19095, A=17509, T=16908, G=19586, t=9597, g=8926, a=9471, c=9176\n", + "NW_003315907.2: C=44750, A=73398, T=77340, G=45838, t=46574, g=20189, a=38010, c=20481\n", + "NT_187521.1: c=4145, a=6101, g=3531, t=5254, T=8410, A=8538, C=7262, G=7017\n", + "NT_187519.1: c=61304, a=107510, g=60178, t=98607, G=113115, A=179460, C=118207, T=173277\n", + "NT_187516.1: g=27648, a=36443, c=28329, t=39595, A=76697, T=81641, G=68681, C=66567\n", + "NT_187518.1: C=22930, A=33550, T=34363, G=23723, g=8332, a=16924, t=17996, c=8016\n", + "NT_187525.1: g=6686, t=10488, c=7027, a=12527, T=25101, G=24334, C=23765, A=26312\n", + "NT_187526.1: A=13767, T=14324, C=11844, G=12682, t=6203, g=3342, a=4841, c=3884\n", + "NT_187529.1: G=38192, A=40466, T=41923, C=41597, g=11073, a=16266, t=20417, c=13691\n", + "NT_187522.1: G=22041, C=23714, A=22599, T=23885, a=8165, g=5791, c=6183, t=8238\n", + "NW_003315908.1: A=26686, G=19100, T=28121, C=17977, c=9296, t=16625, a=16162, g=9423\n", + "NT_187524.1: G=11126, A=14589, T=15453, C=11800, g=15936, t=25577, c=16363, a=22197\n", + "NT_187531.1: T=24414, G=15140, A=22773, C=14393, a=17024, g=11009, t=22378, c=10888\n", + "NT_187530.1: G=13742, A=22167, T=22603, C=13921, t=13054, c=6387, a=12219, g=6302\n", + "NT_187528.1: G=16711, A=19900, T=21650, C=16201, a=10611, c=6307, g=6193, t=12526\n", + "NW_003571033.2: a=6849, t=8961, c=4972, g=5157, C=14458, A=18625, T=20289, G=16820\n", + "NW_003315909.1: a=15135, t=12576, g=8183, c=8880, C=16099, T=23475, G=15554, A=23919\n", + "NT_187527.1: G=38137, A=26878, T=28526, C=35730, g=10297, c=11126, t=12234, a=11238\n", + "NT_187523.1: G=30475, A=28839, T=31160, C=28236, a=12232, g=9851, c=8881, t=11904\n", + "NW_003871060.2: G=22981, A=28436, T=28411, C=23512, c=14432, a=21666, g=14469, t=19244\n", + "NT_187535.1: A=19020, C=12617, T=20847, G=13717, t=15476, g=7906, a=11815, c=7789\n", + "NT_187537.1: c=20724, a=26195, g=19629, t=25798, A=35204, G=30721, T=35102, C=30735\n", + "NW_003315913.1: T=31864, C=18612, A=30275, G=19656, t=26630, g=14576, a=24424, c=14634\n", + "NT_187533.1: G=21593, A=35150, T=32830, C=23774, g=10690, t=18637, a=20013, c=10962\n", + "NT_187536.1: t=36554, a=38892, g=19561, c=18443, T=42919, A=43425, C=24108, G=24350\n", + "NT_187538.1: G=15246, A=18494, T=17524, C=15536, g=10450, a=14177, t=11834, c=9773\n", + "NT_187532.1: C=34838, A=31422, T=33465, G=38016, g=16446, c=16027, a=17415, t=17683\n", + "NT_187534.1: G=29510, A=28996, T=28744, C=29206, a=11674, t=13298, g=10559, c=10442\n", + "NT_187539.1: G=25373, A=32171, T=29995, C=25518, c=14706, t=20079, g=14321, a=22241\n", + "NT_187540.1: G=28694, A=48021, T=46940, C=30040, g=11129, c=11462, t=21385, a=22575\n", + "NW_003315915.1: G=41197, A=74311, T=72289, C=41726, t=49048, g=22337, c=23592, a=51687\n", + "NT_187541.1: c=9714, a=19459, g=9672, t=13932, C=11951, A=18473, T=16813, G=11929\n", + "NT_167250.2: G=64932, T=107659, C=65266, A=106431, g=41566, t=81555, a=77515, c=41552\n", + "NT_187544.1: C=17874, T=30653, A=30741, c=10243, a=19595, t=20668, g=10217, G=18974\n", + "NW_003315914.1: G=20200, A=31950, T=32719, C=20085, t=19191, g=10351, a=19521, c=10519\n", + "NT_187542.1: T=22724, C=14581, A=21919, G=15743, t=13487, a=13737, c=8456, g=9265\n", + "NT_187545.1: G=28415, A=38383, T=39006, C=25156, t=23789, g=15112, a=21927, c=14156\n", + "NT_187543.1: G=36233, A=51194, T=46977, C=39816, g=12497, a=23614, c=13782, t=19983\n", + "NT_187550.1: G=27720, A=21267, T=21364, C=28348, t=7293, c=6858, a=6833, g=6453\n", + "NT_187548.1: A=30903, C=43758, T=27872, G=44082, a=7822, c=8527, t=7750, g=8329\n", + "NT_187547.1: G=45409, A=33534, T=36307, C=44852, c=7973, t=9910, a=9050, g=8675\n", + "NW_003315920.1: G=9268, A=16743, T=16780, C=9576, g=4773, c=4813, a=10269, t=10506\n", + "NW_003571036.1: A=43801, G=25225, C=25446, T=45306, t=30435, g=14014, c=14303, a=28322\n", + "NT_187551.1: C=22864, A=31758, G=22688, T=29210, t=17096, c=10863, a=19275, g=10804\n", + "NW_003315917.2: A=243776, C=155219, T=244010, G=156808, g=143765, t=215539, a=210131, c=143680, N=100000\n", + "NW_003315918.1: A=15278, G=10286, C=9594, T=16778, g=9046, t=16626, c=8800, a=14833\n", + "NT_187549.1: A=33486, T=34045, C=21249, G=22170, a=18373, g=10724, t=21967, c=10694\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "NW_003315919.1: G=20467, A=32573, T=32717, C=19725, t=20991, c=11724, a=23675, g=11587\n", + "NT_187546.1: T=22666, C=19057, c=9995, t=15578, a=12783, g=10913, A=19850, G=21050\n", + "NT_167244.2: T=403803, G=341689, C=342108, A=412965, c=178306, a=261978, t=250320, g=179662, N=2301543\n", + "NT_187555.1: G=20293, A=35474, C=20118, T=35428, c=10174, a=22627, t=21942, g=9752\n", + "NT_187554.1: A=25863, C=15185, T=25609, G=15129, t=22961, a=23999, c=11651, g=11751\n", + "NW_003315921.1: G=15960, A=23919, T=23516, C=15973, a=14860, g=8044, t=14384, c=8080\n", + "NT_187556.1: T=183137, A=194998, C=116551, a=96045, g=43173, t=86325, c=43272, G=106979\n", + "NT_187557.1: G=12814, A=14530, T=14502, C=12985, c=4115, a=5858, t=5869, g=4332\n", + "NW_004166862.2: A=35924, C=32742, G=44072, T=38242, a=10454, g=6625, t=11430, c=6334\n", + "NT_187552.1: T=36846, C=35063, G=34874, A=34308, g=11974, c=10806, t=19416, a=14249\n", + "NT_187553.1: G=51663, C=51512, T=52150, A=53663, t=18137, g=12683, c=12175, a=19799\n", + "NT_187558.1: C=36642, A=29786, T=28548, G=35237, g=5966, t=7551, a=8203, c=6019\n", + "NT_187561.1: g=17608, a=25804, t=25397, c=17416, C=26406, T=35092, G=26080, A=35783\n", + "NT_187559.1: A=27244, T=29520, C=18287, G=19873, t=22128, g=12119, a=17462, c=11533\n", + "NW_003315922.2: C=19090, A=25749, T=25765, G=19300, g=5249, t=9277, a=9151, c=5602\n", + "NT_187562.1: G=179266, A=227106, T=227252, C=181027, g=54263, a=95305, c=54350, t=93001\n", + "NT_187564.1: G=37843, A=49082, T=47818, C=38010, a=29345, g=21505, c=20749, t=27103\n", + "NT_187563.1: G=28329, A=22827, T=23160, C=30110, t=5882, g=4686, c=5464, a=5976\n", + "NT_187560.1: C=40960, T=41327, A=34730, G=47399, t=13350, g=11847, c=8899, a=11476\n", + "NT_187572.1: C=26133, A=24585, T=28923, G=27066, c=7870, t=13145, g=7928, a=9956\n", + "NT_187568.1: C=53466, A=51093, G=59110, T=60394, c=13119, a=14448, t=19329, g=11777\n", + "NT_187565.1: C=57798, G=60824, T=57731, A=56268, t=17621, a=16987, g=13646, c=11561\n", + "NT_187576.1: T=193518, C=159887, A=188011, G=169043, t=87406, c=52794, g=53228, a=81619\n", + "NT_187570.1: a=24020, g=14877, c=16557, t=23981, G=50092, A=59039, T=60979, C=50685\n", + "NT_187577.1: a=90138, g=51960, t=104752, c=50696, C=60044, T=105684, A=98864, G=62354\n", + "NT_187566.1: A=28530, G=26237, C=22444, T=27924, g=6887, c=6016, a=11025, t=12749\n", + "NT_187567.1: A=70068, T=70069, G=45168, g=26436, c=26794, a=46708, t=44551, C=44621\n", + "NT_187574.1: A=22005, T=23373, G=36693, C=32870, t=4446, g=4932, a=4627, c=4589\n", + "NT_187575.1: C=8567, G=9929, A=6857, T=7528, t=1062, c=877, g=944, a=876\n", + "NT_187573.1: C=31056, G=29781, T=24939, A=26463, a=12882, g=10948, c=11098, t=11816\n", + "NT_187571.1: C=69070, A=46445, G=67786, T=45437, g=18617, c=19013, t=20645, a=18828\n", + "NT_187569.1: C=20701, T=17692, G=18535, A=19184, g=12976, t=14505, a=15726, c=12925\n", + "NW_003315928.1: T=35875, C=23566, G=24965, A=33784, c=7917, a=13821, t=14888, g=8172\n", + "NW_003315929.1: A=13297, C=11825, T=12687, G=11905, t=7708, g=4581, a=5184, c=4364\n", + "NW_003315930.1: A=32601, C=24068, T=33505, G=24592, t=18908, c=10617, g=10843, a=16152\n", + "NW_003315931.1: T=9711, A=10373, C=7669, G=7639, g=5416, t=6624, a=7686, c=4914\n", + "NT_187578.1: c=23989, t=44716, a=46225, g=25051, G=60486, T=89794, C=58733, A=90088\n", + "NW_003315934.1: C=23468, T=34762, A=34310, G=23662, t=19495, g=11808, a=19530, c=12219\n", + "NT_187579.1: a=29234, t=34214, g=18447, c=19601, T=22550, C=16994, A=23100, G=17356\n", + "NW_003315935.1: G=38120, A=48976, T=45600, C=38909, a=45640, c=27800, t=37426, g=27331\n", + "NT_187586.1: C=42074, T=28140, G=44578, A=27924, g=17438, t=16153, c=17273, a=16553\n", + "NT_187584.1: A=27881, T=27815, C=36248, G=36020, c=12143, g=11023, a=12904, t=13058\n", + "NT_187585.1: G=64705, A=54686, T=49976, C=67675, t=15508, g=13978, c=13934, a=16402, N=31\n", + "NT_187583.1: G=23124, A=34963, T=32539, C=23313, g=16911, t=26376, a=30743, c=16090\n", + "NW_003315936.1: G=16393, A=28954, t=22694, c=9780, a=20052, g=10046, C=16494, T=29994\n", + "NW_003871073.1: G=21913, A=37948, T=37642, C=22483, t=26082, g=13344, a=28477, c=13109\n", + "NW_003871074.1: C=23351, T=34575, A=37340, G=22587, a=23835, g=12682, t=24333, c=12706\n", + "NT_187582.1: T=12641, A=11159, C=12465, G=13300, t=5638, c=4103, g=4003, a=4398\n", + "NT_187581.1: a=13091, g=8000, t=13476, T=38983, A=37569, G=34242, C=33080, c=7728\n", + "NW_003571049.1: c=8274, t=9812, a=10784, A=31002, C=33962, T=30863, g=7937, G=34679\n", + "NW_003571050.1: A=83190, C=52135, T=81322, G=48869, c=24081, t=45397, g=23172, a=50105\n", + "NT_187588.1: c=2218, t=3311, g=2206, a=4096, A=8716, C=5882, T=7867, G=5794\n", + "NW_003315938.1: A=23287, T=22711, C=15437, G=15071, t=13221, a=14934, c=8144, g=7999\n", + "NT_187587.1: T=41791, C=32498, G=30469, A=44564, t=24611, g=17788, c=18396, a=28022\n", + "NW_003315939.2: A=25741, T=24350, C=18434, G=16796, g=15557, c=16138, t=25019, a=27143\n", + "NW_003315941.1: c=7857, a=14734, t=16838, g=7993, C=17072, A=27705, T=28744, G=17712\n", + "NW_003315942.2: G=19577, A=27115, T=29134, C=19035, a=16409, c=10625, t=20021, g=10958\n", + "NT_187590.1: C=20611, T=23560, G=21939, A=20206, g=6810, t=10306, a=8548, c=7518\n", + "NW_003315940.1: T=34530, G=24922, A=32907, C=23843, a=19049, t=23142, g=13259, c=12667\n", + "NT_187589.1: C=13259, T=18003, A=15426, G=14066, a=4244, t=5474, g=2666, c=2923\n", + "NT_187591.1: C=11155, A=10143, T=9719, G=12129, c=3164, a=2762, t=4324, g=2738\n", + "NT_187594.1: G=23926, T=34619, A=35742, C=29279, g=12520, c=14841, a=21108, t=19649\n", + "NT_187593.1: G=25905, A=39968, T=36001, C=28558, g=9281, c=9503, t=14869, a=16221\n", + "NT_187597.1: T=21391, G=12142, A=22019, C=11950, c=5873, a=12767, t=11966, g=5724\n", + "NT_187595.1: A=34192, T=34712, G=19650, C=19773, c=9651, t=21100, g=9709, a=20347\n", + "NT_187592.1: G=50546, T=52902, A=55129, C=52411, g=20331, c=19079, t=27987, a=28528\n", + "NT_187596.1: T=7171, A=6343, C=8990, G=9263, g=1397, c=1152, a=1121, t=1850\n", + "NT_187598.1: A=54378, C=35409, T=51874, G=33869, t=42505, a=47449, g=28447, c=28235\n", + "NT_187601.1: C=242426, A=272582, G=244803, T=274339, g=100337, c=96878, a=137584, t=142162\n", + "NT_187599.1: A=33796, T=30313, G=37610, C=39720, a=12294, c=8494, t=10046, g=8430\n", + "NT_187600.1: T=261337, A=251738, C=237906, G=239715, a=106230, c=69694, g=68596, t=116177\n", + "NT_187602.1: G=62368, A=90201, T=89797, C=63904, t=58819, g=29947, a=54362, c=29601\n", + "NT_187604.1: G=38229, A=42928, T=45794, C=37926, t=30167, c=20016, a=27475, g=20519\n", + "NT_187603.1: G=42934, A=51755, T=49705, C=42935, g=31248, t=38835, a=39172, c=30798\n", + "NW_003315943.1: T=49528, G=38978, A=49260, C=39207, c=25152, g=25132, t=35024, a=34246\n", + "NT_187605.1: G=28574, A=37798, T=37049, C=28874, t=33315, a=33654, g=22436, c=23217\n", + "NW_003315944.2: A=76290, G=73200, C=76131, T=72060, t=23185, c=20051, g=20733, a=27123\n", + "NT_187606.1: G=72762, A=80692, T=79940, C=72907, c=25942, a=36764, g=25565, t=36308\n", + "NT_187610.1: C=22443, G=22699, A=15476, T=18064, c=13931, g=14054, a=13020, t=14506\n", + "NT_187609.1: g=7429, t=6787, a=7824, c=7381, A=7520, C=10215, T=7143, G=9683\n", + "NT_187608.1: C=40463, A=31992, G=41143, T=31879, t=22182, a=21275, g=21977, c=21946\n", + "NT_187607.1: C=342152, A=393569, G=349926, T=405423, c=265521, g=264469, t=329793, a=308847\n", + "NW_003315945.1: G=32958, A=40042, T=38103, C=34688, a=15921, g=8959, c=8879, t=12912\n", + "NW_003315946.1: G=8091, A=13174, T=11642, C=9187, a=13991, g=11301, t=11552, c=10734\n", + "NW_003315952.3: G=69361, A=64716, T=61194, C=78200, t=25205, c=23443, g=24375, a=29197\n", + "NT_187613.1: a=40401, g=39195, t=36889, c=39608, T=52339, C=64737, G=59845, A=58343\n", + "NT_187611.1: c=20899, a=20709, t=19119, g=21964, G=31360, C=32416, T=24480, A=25741\n", + "NT_187614.1: A=467130, G=423937, T=471752, C=417731, a=304656, g=245066, c=243803, t=302999\n", + "NW_003871091.1: A=53368, T=56699, C=38330, G=41276, c=16089, t=29021, a=26990, g=16358\n", + "NW_003871092.1: C=9311, A=12851, G=9926, T=13678, c=4967, a=6286, g=4476, t=8850\n", + "NW_003315953.2: G=24228, A=26050, T=27637, C=24016, t=9771, a=9065, g=6043, c=6341\n", + "NT_167251.2: T=294441, C=245460, A=291790, G=252014, t=194109, c=151693, g=152381, a=190104, N=50000\n", + "NW_003315954.1: C=27753, A=44837, T=45686, G=27803, t=23940, a=26371, g=13836, c=13769\n", + "NT_187615.1: t=24167, a=28596, g=13416, c=13974, T=46174, C=31236, A=48845, G=29419\n", + "NT_187616.1: A=20756, G=15442, T=18153, C=16843, a=11777, g=8498, c=7976, t=9318\n", + "NW_003315955.1: C=14109, T=12473, A=11192, G=14280, c=9165, t=10095, a=9434, g=9471\n", + "NT_187612.1: G=38743, A=28643, T=30354, C=39799, t=13361, c=9054, a=9808, g=9159\n", + "NT_187618.1: G=11647, A=20356, T=21701, C=12330, c=7319, t=17097, a=14080, g=7207\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "NW_003315956.1: T=53352, G=39670, A=50773, C=39147, t=35291, g=20940, a=29541, c=21117\n", + "NW_003315959.1: G=21363, A=31831, T=30515, c=11012, t=17952, a=20056, g=10864, C=21196\n", + "NW_003315960.1: A=31174, C=18536, T=29920, G=19049, g=8234, t=16876, a=16556, c=7933, N=50000\n", + "NW_003315957.1: g=8321, a=15107, t=13558, c=8423, T=18158, C=11503, A=18239, G=11243\n", + "NW_003315958.1: A=36269, G=33776, T=33606, C=34576, c=6171, a=10391, t=7364, g=5797\n", + "NW_003315961.1: T=30504, G=28217, C=29775, A=29982, c=8822, a=11555, g=8489, t=12203\n", + "NT_187617.1: c=6800, a=9788, g=7330, t=9658, A=31395, T=31436, G=36026, C=35566\n", + "NT_187622.1: A=6653, C=11534, T=6358, G=11895, c=6620, t=5290, a=6365, g=7019\n", + "NT_187621.1: C=13587, A=7489, G=12088, T=6392, g=3927, c=3662, a=3124, t=2700\n", + "NW_003315962.1: G=35923, T=55588, A=53885, C=40403, g=38307, t=58851, c=41535, a=61165\n", + "NW_003315964.2: c=16073, a=24396, g=15884, t=22757, C=18227, A=27518, T=26945, G=18422\n", + "NW_003315965.1: G=18941, A=26897, T=27976, C=18799, a=28598, c=17996, t=30292, g=18525\n", + "NW_003315963.1: C=16065, A=21580, G=17099, T=23677, t=21973, g=17655, a=20320, c=17495\n", + "NT_187619.1: t=3687, c=3567, g=3781, a=3823, C=6609, A=6238, G=8398, T=7053\n", + "NT_187620.1: G=33549, a=25908, t=28732, c=17742, g=18602, T=38575, A=37634, C=33020\n", + "NW_003571054.1: T=124070, G=130339, C=129269, A=124563, a=98707, c=87087, g=88782, t=99899, N=105000\n", + "NW_003315966.2: G=21642, A=22667, C=21774, T=20974, g=8962, t=10454, c=9092, a=12821\n", + "NT_187623.1: T=19430, G=25887, A=22345, C=27732, c=5225, a=6779, t=5757, g=5619\n", + "NT_187625.1: C=16225, T=8014, A=10372, t=1744, a=2423, g=2860, G=14477, c=2546\n", + "NT_187624.1: G=42623, A=31864, T=36651, C=40374, c=7711, a=7438, g=7092, t=9680\n", + "NW_003315967.2: g=4184, a=7696, t=9008, c=4080, G=7481, T=12404, A=11695, C=7369\n", + "NT_187628.1: g=16107, a=34109, t=22100, c=16856, T=22200, A=25117, G=14504, C=15750\n", + "NT_187627.1: G=16479, A=23232, T=23429, C=16164, t=19580, c=13300, a=18496, g=13220\n", + "NW_003315968.2: A=38033, C=21677, T=38561, G=22240, t=28483, g=13626, c=12630, a=25947\n", + "NW_003315969.2: T=12524, G=8972, A=11840, C=8910, t=10279, a=8916, c=6669, g=6543\n", + "NW_003315970.2: C=11591, A=16228, T=14980, G=11883, a=18090, t=15435, g=14486, c=13996\n", + "NT_187626.1: G=16990, C=17348, T=11722, A=13620, c=5339, t=5299, a=7236, g=5138\n", + "NT_187629.1: C=37676, A=45374, T=43610, G=37597, t=28233, a=27490, c=19937, g=19997\n", + "NT_187632.1: A=31369, T=31120, G=33542, C=35046, c=12379, t=15329, g=12114, a=15363\n", + "NT_187633.1: A=45615, G=52251, C=51245, T=46890, c=26116, g=26350, a=27425, t=28243\n", + "NT_187630.1: c=17966, g=18237, a=29804, t=24699, T=48400, C=36381, G=34488, A=53691\n", + "NT_187631.1: A=18037, G=19696, C=19349, T=18978, a=6429, t=7144, g=6116, c=5582\n", + "NW_003315972.2: A=14126, G=13144, a=11086, g=8945, c=9438, t=12276, T=14748, C=13161\n", + "NW_003315971.2: T=26405, G=24016, C=24879, A=27008, t=15794, c=13707, a=17317, g=13685\n", + "NT_187634.1: G=38596, A=33518, T=32475, C=37197, c=34312, t=39473, a=35079, g=34219\n", + "NT_187635.1: g=13622, a=25838, t=24171, c=14036, G=13156, T=19937, C=13291, A=20155\n", + "NT_187646.1: C=22610, A=32873, T=34161, G=23027, g=7924, a=16388, t=17335, c=7894\n", + "NT_187648.1: A=29094, G=23119, C=23035, T=28690, a=35481, c=22318, t=30446, g=21975\n", + "NT_187647.1: G=30714, A=28967, T=31279, C=28342, a=11974, g=9505, c=8627, t=11810\n", + "NT_187649.1: G=26470, A=26634, T=24985, C=29964, g=12906, t=14361, a=14540, c=13036\n", + "NT_187650.1: G=53113, A=71660, T=67883, C=57061, g=22573, a=42701, c=25440, t=38116\n", + "NT_187651.1: T=181591, C=114018, A=179444, G=116689, t=154559, g=100296, a=148805, c=99016, N=50000\n", + "NT_187652.1: T=22300, C=19196, c=9839, t=15262, a=12546, g=10601, A=19713, G=21500\n", + "NT_113891.3: A=812637, T=798595, G=695321, C=695596, t=512957, g=377411, a=528568, c=374180\n", + "NT_187653.1: c=8080, t=10391, a=11859, A=36310, T=34711, C=41227, G=40052, g=8239\n", + "NT_187655.1: C=23644, A=23604, G=25507, T=27001, c=6818, t=12923, a=10176, g=7286\n", + "NT_187654.1: G=57594, C=58125, T=58116, A=57512, c=18535, g=19142, t=26143, a=23520\n", + "NT_187656.1: g=6488, a=5715, t=6581, c=5589, A=15328, T=19460, C=20794, G=26756\n", + "NT_187657.1: A=34427, T=33583, C=41210, G=41472, c=15303, g=14267, a=17864, t=16499\n", + "NT_187658.1: A=110078, C=70109, T=108644, G=67646, c=37930, t=64487, g=36888, a=76567\n", + "NT_187659.1: G=25901, C=24491, A=30926, T=32305, g=18353, t=24384, c=18225, a=21799\n", + "NT_187660.1: T=836917, G=685519, A=848267, C=688847, g=339196, t=505461, a=513478, c=339722, N=404007\n", + "NT_187662.1: T=23853, G=29270, C=25470, A=21350, a=9263, g=9275, t=10369, c=8871\n", + "NT_187664.1: a=11610, g=11969, t=10942, c=12240, T=23328, C=31831, G=29929, A=25250\n", + "NT_187661.1: T=57904, A=56490, C=52628, G=52601, c=21765, t=29558, g=22894, a=31960\n", + "NW_003871093.1: C=10547, A=14861, G=11351, T=15515, c=7020, a=9275, g=6785, t=12716\n", + "NT_187663.1: T=239848, C=218065, A=240726, G=215557, t=140119, c=113127, g=112539, a=143209\n", + "NT_187665.1: A=36350, G=34359, T=32728, C=36704, c=7604, a=11451, t=8127, g=6738\n", + "NT_187666.1: T=30067, G=27959, C=29205, A=29506, c=8820, a=11539, g=8444, t=12170\n", + "NW_003571055.2: T=86950, G=90505, C=89083, A=87655, a=79955, c=73136, g=75496, t=80740, N=66000\n", + "NW_004504305.1: T=12165, G=12624, C=12617, A=10722, t=7263, c=6098, a=6449, g=6075\n", + "NT_187667.1: A=32770, G=37179, T=31479, t=37880, c=33086, g=32004, a=33552, C=36059\n", + "NT_187678.1: G=27755, A=27417, T=25597, C=31036, g=12759, t=14292, a=14566, c=13118\n", + "NT_187679.1: G=82852, A=115743, T=110010, t=46816, c=28605, a=50532, C=91878, g=29363\n", + "NT_167245.2: T=695345, G=613355, C=614136, A=709917, c=328172, a=461002, t=446156, g=330634, N=406094\n", + "NT_187680.1: T=38914, A=38506, G=36865, C=37102, t=21635, c=16423, a=23512, g=16325\n", + "NT_187681.1: g=12476, a=13006, t=13387, c=12358, A=33174, T=36471, C=44996, G=52744\n", + "NW_003571056.2: T=55608, G=60932, C=59204, A=56187, a=57041, c=54515, g=56109, t=57708, N=607000\n", + "NT_187682.1: T=28665, G=26891, C=27993, A=29118, t=16622, c=14456, a=18017, g=14341\n", + "NT_187688.1: G=26623, A=26770, T=25078, C=30137, g=12909, t=14363, a=14545, c=13033\n", + "NT_167246.2: T=681862, G=582235, C=579563, A=692111, c=322221, a=462317, t=450885, g=323927, N=582522\n", + "NW_003571057.2: T=52158, G=57075, C=56065, A=52572, a=55572, c=52925, g=54136, t=55338, N=656000\n", + "NT_187689.1: C=34435, A=30496, T=32929, G=36595, g=15418, c=14400, a=16282, t=16796\n", + "NT_167247.2: T=632115, G=565684, C=566890, A=645413, c=290449, a=403939, t=390662, g=294174, N=1038487\n", + "NW_003571058.2: T=48730, G=53072, C=52596, A=48715, a=54379, c=52547, g=53416, t=54935, N=648000\n", + "NT_187690.1: G=26845, A=26946, T=25212, C=30351, g=12892, t=14335, a=14559, c=13030\n", + "NT_167248.2: T=713687, G=629814, C=629663, A=723584, c=336138, a=464468, t=453569, g=338806, N=316659\n", + "NW_003571059.2: T=57172, G=62193, C=60825, A=57898, a=58096, c=55222, g=56614, t=58663, N=536000\n", + "NT_187691.1: G=27047, A=27263, T=25466, C=30818, g=12909, t=14397, a=14653, c=13054\n", + "NT_167249.2: T=703086, A=710501, C=598134, G=604030, t=453444, g=322911, c=320097, a=462050, N=755016\n", + "NW_003571060.1: T=136857, G=141845, C=140508, A=137735, a=112165, c=97846, g=101064, t=114080, N=5000\n", + "NT_187692.1: g=4582, a=7562, t=7506, c=5302, C=10856, G=10753, A=15080, T=15111\n", + "NW_003571061.2: T=92112, G=96550, C=95899, A=92175, a=78712, c=70607, g=71990, t=78434, N=120000\n", + "NT_187693.1: T=150608, G=156057, C=154389, A=151817, a=119935, c=104552, g=107559, t=121883\n", + "NT_187636.1: A=42335, C=42190, T=44740, G=39772, a=22530, t=23329, c=17650, g=16261\n", + "NT_187637.1: C=28391, A=28530, T=30298, G=26807, g=11187, a=16025, t=16703, c=12458\n", + "NT_187638.1: a=14996, t=15611, c=11545, g=10458, C=26013, A=26229, T=27709, G=24492\n", + "NT_187639.1: t=16786, c=12547, a=16166, g=11317, C=28475, A=28585, T=30362, G=26789\n", + "NT_187640.1: A=34845, C=34988, T=36862, G=32789, g=13086, t=19099, a=18132, c=14438\n", + "NT_187641.1: A=35061, C=34620, T=36859, G=32734, a=20159, c=15445, t=20408, g=14226\n", + "NT_187642.1: T=27584, C=25716, A=26056, G=24392, g=10342, t=15457, a=14784, c=11201\n", + "NT_187643.1: T=30343, C=28468, A=28566, G=26801, c=12456, t=16760, g=11218, a=16086\n", + "NT_187644.1: A=31260, T=32967, G=29341, C=31204, c=13042, t=17677, g=11972, a=17036\n", + "NT_187645.1: T=30303, C=28434, A=28519, G=26783, c=12497, t=16779, g=11238, a=16127\n", + "NT_187668.1: C=35186, T=36942, A=34910, G=32822, t=19264, a=18266, g=13129, c=14675\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "NT_187669.1: T=30313, C=28435, A=28540, G=26792, c=12478, t=16778, g=11221, a=16108\n", + "NT_187670.1: c=13091, a=17099, g=12013, t=17641, C=31104, A=31231, T=32975, G=29362\n", + "NT_187671.1: A=30413, C=26622, G=28627, T=29052, t=21288, g=18217, a=21190, c=15523\n", + "NT_187672.1: G=20824, A=22189, T=20965, C=19689, c=7678, g=8491, a=12269, t=11006\n", + "NT_187673.1: A=28589, T=30343, C=28438, G=26806, c=12494, t=16749, g=11211, a=16071\n", + "NT_187674.1: A=31511, C=27367, G=29173, T=29998, c=16254, t=22124, g=18709, a=22869\n", + "NT_187675.1: C=41801, A=47041, G=44496, T=44828, t=29136, c=21362, g=24022, a=29538\n", + "NT_187676.1: a=20646, g=17974, t=20946, c=15309, G=28321, T=28621, A=29784, C=26334\n", + "NT_187677.1: C=25755, A=29567, G=27558, T=28309, t=21821, g=18201, a=22421, c=15720\n", + "NT_187683.1: A=29538, C=26085, T=28354, G=27994, a=20496, g=17701, c=15232, t=20803\n", + "NT_187684.1: T=35971, C=34327, A=34104, G=31940, c=14392, t=18871, g=12867, a=18301\n", + "NT_187685.1: t=16722, c=12309, g=11263, a=16074, C=28284, A=28483, T=30250, G=26763\n", + "NT_187686.1: T=38639, G=34303, A=36502, C=36610, t=20319, c=15527, a=19781, g=14051\n", + "NT_187687.1: T=30337, C=28463, A=28573, G=26822, c=12403, t=16710, g=11190, a=16039\n", + "NT_113949.2: G=28410, A=30286, T=31982, C=30314, t=16854, c=12429, a=15759, g=11347\n", + "NC_012920.1: G=2169, A=5124, T=4094, C=5181, N=1\n", + "CPU times: user 17.9 s, sys: 7.39 s, total: 25.3 s\n", + "Wall time: 19min 30s\n" + ] + } + ], + "source": [ + "%%time\n", + "seq_counter = SeqCounter('../data/GRCh38_latest_genomic.fna', 1)\n", + "print(seq_counter)\n", + "seq_counter.output_results()" + ] + }, + { + "cell_type": "code", + "execution_count": 4, + "id": "264d9fdf", + "metadata": { + "ExecuteTime": { + "end_time": "2022-04-27T19:12:28.463282Z", + "start_time": "2022-04-27T18:55:06.478915Z" + } + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Path to the file: ../data/GRCh38_latest_genomic.fna\n", + "Number of threads: 2\n", + "NT_187361.1: G=21162, A=27812, T=28097, C=22678, g=14746, t=22941, a=22589, c=15030\n", + "NC_000001.11: N=18475408, t=25922550, a=25810086, c=16788841, g=16855483, C=31266202, G=31256045, T=41321614, A=41260191, M=1, R=1\n", + "NT_187362.1: A=3698, G=2858, T=3012, C=2663, t=4874, c=4118, a=6741, g=4068\n", + "NT_187363.1: g=15374, a=21515, t=22087, c=14581, G=11355, C=11061, T=16322, A=15387\n", + "NT_187365.1: A=6892, C=4131, T=7573, G=4071, t=6280, g=3102, c=3019, a=5108\n", + "NT_187364.1: g=6917, a=13516, t=14842, c=8228, G=4664, A=6616, T=7146, C=4931\n", + "NT_187366.1: t=4163, g=2926, a=4770, c=3071, C=6163, T=7662, A=7516, G=5939\n", + "NT_187367.1: G=23619, A=25329, T=25118, C=22712, a=22014, g=16992, t=23518, c=16741\n", + "NT_187368.1: G=7661, A=7857, C=7266, T=7459, g=2249, c=2243, a=3157, t=2853\n", + "NT_187369.1: C=8914, T=6771, A=6735, a=2757, g=2497, t=2655, c=2626, G=8762\n", + "NT_187370.1: G=322, A=306, T=398, C=228, a=47274, c=27078, g=34482, t=51383\n", + "NC_000002.12: N=1645292, C=32288347, G=32342686, T=45192543, A=45077416, t=26795389, c=16029833, a=26713797, g=16108217, Y=4, R=1, W=2, K=1, M=1\n", + "NT_187371.1: G=824, A=937, T=1236, C=690, a=43917, c=25879, t=48901, g=31415\n", + "NC_000003.12: N=195417, c=13660493, t=23098663, a=22956666, A=36732425, C=25572990, T=36734639, g=13759689, G=25584570, R=1, Y=3, W=2, B=1\n", + "NT_167215.1: G=16346, A=24462, T=24491, C=16092, g=13806, a=23453, c=13794, t=22953\n", + "NC_000004.12: N=461888, a=23144996, c=13003496, t=23171273, g=13090368, T=35452157, A=35416240, C=23233480, G=23240657\n", + "NT_113793.3: g=20528, a=31193, t=30113, c=18348, G=21940, T=31998, A=32240, C=23349\n", + "NC_000005.10: N=272881, t=21565326, a=21366327, c=12610126, T=33389684, A=33332767, C=23121474, G=23153233, g=12726441\n", + "NT_113948.1: g=15802, a=27709, t=27480, c=17433, A=1470, T=1122, C=936, G=737\n", + "NC_000006.12: N=727456, G=21987186, A=31652686, T=31697422, C=21955005, c=11691685, a=19692791, t=19675603, g=11726144, Y=1\n", + "NC_000008.11: N=370500, G=19168338, C=19190509, A=26893423, T=26846852, t=16453794, a=16440107, g=9935449, c=9839664\n", + "NC_000007.14: N=375838, c=11811170, t=18954841, a=18791911, A=28266337, T=28260199, C=20506814, G=20482778, g=11896081, R=1, Y=2, S=1\n", + "NT_187372.1: T=5911, A=5976, C=4261, G=4721, c=3599, t=5785, a=6132, g=3677\n", + "NC_000009.12: N=16604164, t=13939089, a=13877112, c=8721401, T=21844659, A=21859217, C=16378410, G=16380119, g=8790543, R=1, Y=2\n", + "NT_187373.1: A=6658, G=4309, T=7030, C=4473, t=5151, c=3049, g=2841, a=4543\n", + "NT_187374.1: G=22370, A=32965, T=33188, C=22477, t=20847, g=11244, c=11257, a=22497\n", + "NT_187375.1: G=4228, C=4135, T=6279, A=6457, t=5637, a=5942, c=3236, g=3136\n", + "NC_000010.11: N=534424, c=9395745, t=14885616, a=14762774, C=18243760, T=24141939, A=24113152, G=18251419, g=9468557, R=13, Y=8, W=6, M=3, K=4, B=1, S=1\n", + "NC_000012.12: N=137490, c=9998381, t=15837633, a=15747193, A=23622916, C=17094423, T=23654592, g=10092690, G=17089988, Y=2, M=1\n", + "NC_000011.10: N=552880, G=18315306, A=24027062, T=24071077, t=15290877, c=9610266, a=15259668, g=9666495, C=18292991\n", + "NC_000014.9: N=16475569, a=10499993, g=6675322, c=6580854, t=10651102, G=11883711, C=11842904, T=16260841, A=16173422\n", + "NC_000013.11: N=16381200, a=11492777, g=6529855, c=6433785, t=11548295, G=12403750, C=12405407, T=18614422, A=18554834, Y=2, K=1\n", + "NT_113796.3: G=23733, A=32705, T=32920, C=22393, t=28513, a=26775, g=17462, c=17208\n", + "NT_167219.1: G=31699, A=31839, T=31467, C=31071, t=22132, g=20001, c=17860, a=25104\n", + "NT_187377.1: G=19059, A=27849, T=27822, C=18953, a=30680, g=20466, t=29753, c=19468\n", + "NT_113888.1: G=25707, A=30293, T=30294, C=25751, t=25399, g=15599, a=22656, c=15770\n", + "NT_187378.1: c=2127, a=3758, g=2191, t=3284, A=7179, G=6531, C=6438, T=6607\n", + "NT_187379.1: C=6659, A=6980, G=6696, T=7506, g=2129, c=2272, t=3822, a=3491\n", + "NT_187381.1: G=6803, C=6597, T=8296, A=8046, a=4049, c=2514, t=4796, g=2638\n", + "NT_187380.1: G=19392, A=28449, T=28531, C=19184, g=13431, t=25920, a=24301, c=13602\n", + "NT_187382.1: g=28734, a=50914, t=55833, c=28315, A=82991, G=58583, T=83411, C=59467\n", + "NC_000015.10: N=17349864, C=11569843, T=15013059, A=15007333, G=11568711, g=6257192, a=9501336, c=6183098, t=9540753\n", + "NT_187383.1: G=176864, A=216050, T=215669, C=173704, a=248289, g=148705, t=241862, c=151616, N=300000\n", + "NC_000016.10: N=8532401, t=9119330, a=8971957, c=6551766, g=6618326, C=11620976, A=13586362, T=13655576, G=11681650, R=1\n", + "NT_113930.2: g=16145, a=25966, t=23695, c=15239, C=22980, A=29941, T=28838, G=22787\n", + "NC_000017.11: N=337225, G=11569134, A=13167682, T=13189069, C=11599860, t=9516192, c=7124084, g=7282366, a=9471817, R=3, S=1, K=2, Y=5, W=1\n", + "NT_187385.1: G=3874, C=2173, T=3989, A=5147, t=19894, a=35152, g=29960, c=6393, N=5969\n", + "NT_187384.1: C=9594, A=15653, T=16093, G=10755, t=65463, g=48452, c=31668, a=71804, N=11357\n", + "NC_000019.10: N=176858, G=7823665, A=7768730, T=7771954, C=7793330, t=7510799, a=7373563, c=6161250, g=6237467\n", + "NC_000018.10: N=283680, c=5602002, t=9668263, a=9568172, T=14514556, A=14482508, C=10192453, G=10212102, g=5849549\n", + "NC_000021.9: N=6621361, g=2981169, a=4844675, t=4866512, c=2936147, A=6975989, C=5249097, G=5245212, T=6989818, M=2, R=1\n", + "NC_000020.11: N=499910, T=11065170, G=9260186, C=9219090, A=10965321, c=4697043, t=7001236, g=4834286, a=6901925\n", + "NT_187386.1: A=25361, C=25099, T=27201, G=26924, c=9816, a=12886, t=13367, g=10100\n", + "NC_000022.11: N=11658686, G=5863266, A=6011399, T=6004578, C=5860725, a=4370815, c=3299927, t=4366147, g=3382920, R=2, W=1, Y=2\n", + "NT_187387.1: T=6226, A=6067, G=4018, C=3877, c=3665, a=7831, t=5984, g=3875\n", + "NT_187388.1: G=27910, A=25475, T=27126, C=28004, t=23859, g=13247, a=17703, c=16448\n", + "NT_187390.1: a=6823, t=7691, c=4552, g=2831, T=6224, C=4072, A=6484, G=4134\n", + "NT_187391.1: g=46760, a=38768, t=25544, c=4872, T=14082, G=15083, A=16456, C=8072, N=12283\n", + "NT_187392.1: C=3135, A=4651, T=4841, G=3020, c=17576, a=27067, g=14104, t=29033, N=411\n", + "NT_187393.1: a=29171, t=20158, c=11808, g=15336, C=3679, T=5358, A=6371, G=3939, N=3555\n", + "NT_187394.1: c=12622, t=21424, g=13238, a=22118, C=605, G=547, T=964, A=905, N=1562\n", + "NC_000023.11: N=1147861, c=12709203, t=21154624, a=21011311, G=17848997, A=25743496, T=25762077, C=17814577, g=12848744, Y=2, R=1, S=1, W=1\n", + "NT_187395.1: t=11200, a=7176, g=7574, c=6292, G=1182, T=1778, C=940, A=1098\n", + "NC_000024.10: N=30812367, c=2259941, t=3647964, a=3591504, G=3035689, A=4294688, T=4308204, C=3025848, g=2251205, Y=2, R=1, S=1, W=1\n", + "NT_187396.1: t=652, g=480, a=610, c=418, G=24, T=32, C=24, A=34\n", + "NT_187397.1: t=608, c=457, g=388, a=702, G=4, A=4, T=2\n", + "NT_187398.1: G=9, A=9, C=11, T=9, a=614, g=343, t=544, c=403\n", + "NT_187399.1: T=23, t=421, g=315, c=272, a=389, A=28, G=10, C=14\n", + "NT_187401.1: G=56, C=62, A=83, T=81, c=790, g=932, t=1230, a=1182\n", + "NT_187400.1: c=1341, a=1765, g=1144, t=1664, T=84, G=59, A=87, C=64, N=15268\n", + "NT_187402.1: g=219, a=398, t=330, c=254\n", + "NT_187403.1: g=290, t=454, c=243, a=397, G=13, T=16, A=22, C=9\n", + "NT_187404.1: T=16, G=8, A=8, t=724, c=397, a=657, g=461, C=5\n", + "NT_187405.1: g=171, a=336, t=291, c=200\n", + "NT_187406.1: a=847, g=613, t=962, c=521, N=9433, A=7, G=7, C=5, T=4\n", + "NT_187407.1: g=622, t=1030, a=1176, c=743, G=15, A=16, T=14, C=8, N=34066\n", + "NT_187408.1: a=387, g=201, t=308, c=227, C=15, T=11, A=20, G=10\n", + "NT_187409.1: G=7, A=15, T=8, t=739, g=454, a=887, c=527, C=9\n", + "NT_187410.1: t=828, a=676, c=432, g=483, T=30, G=13, C=12, A=15\n", + "NT_187411.1: g=188, c=186, a=288, t=304, C=9, A=18, G=19, T=17\n", + "NT_187412.1: T=27, C=23, G=14, A=26, g=406, c=412, a=629, t=608\n", + "NT_187413.1: t=619, c=455, a=653, g=405, T=56, A=52, C=45, G=36\n", + "NT_187414.1: T=46, C=29, A=45, G=31, a=637, t=625, c=351, g=376\n", + "NT_187415.1: A=52, a=603, c=315, t=602, g=374, C=17, G=38, T=42\n", + "NT_187416.1: A=31, t=398, c=276, a=415, g=264, C=25, T=21, G=15\n", + "NT_187417.1: A=10, G=14, T=20, C=7, g=184, a=271, c=184, t=291\n", + "NT_187418.1: g=375, t=550, c=310, a=540, G=27, A=32, T=31, C=19\n", + "NT_187419.1: C=9, G=7, T=16, t=459, c=220, a=371, g=266, A=13\n", + "NT_187421.1: c=74, a=306, g=130, t=448, A=78, C=28, T=124, G=45\n", + "NT_187420.1: a=95585, t=77479, g=65178, c=43975, T=23248, G=21960, C=18922, A=24682, N=21032\n", + "NT_187422.1: g=283, a=562, t=520, c=364, C=8, A=13, G=10, T=14\n", + "NT_187423.1: g=495, a=1021, c=267, t=1442, C=76, A=203, T=303, G=113\n", + "NT_187424.1: A=1342, T=1469, t=28404, c=14951, a=27442, g=17358, G=1027, C=909, N=81\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "NT_187425.1: T=2226, C=1018, G=2566, A=3253, c=7458, t=18034, a=27731, g=21725, N=28494\n", + "NT_187426.1: T=62, C=24, G=46, A=48, a=1209, t=1255, c=650, g=761\n", + "NT_187427.1: a=723, t=751, c=368, g=454, A=25, C=21, T=47, G=26\n", + "NT_187428.1: A=67, T=39, G=38, g=323, a=706, t=674, c=428, C=43\n", + "NT_187429.1: T=35, A=21, G=21, C=19, g=420, a=649, t=690, c=331\n", + "NT_187430.1: C=26, T=35, a=339, g=392, t=748, c=373, G=22, A=16\n", + "NT_187431.1: A=17, T=16, a=392, t=403, c=203, g=250, G=6, C=13\n", + "NT_187432.1: A=315, G=166, C=207, T=262, g=4248, c=4146, a=6432, t=6913\n", + "NT_187433.1: t=41152, g=25338, a=41758, c=22565, C=1300, A=1883, T=2123, G=1549, N=458\n", + "NT_187434.1: a=1789, g=881, t=1612, c=1105, C=54, T=94, A=87, G=52\n", + "NT_187435.1: c=1533, a=2600, g=1307, t=2395, A=104, G=47, C=68, T=73\n", + "NT_187436.1: G=93, A=90, C=73, T=148, t=2000, a=1864, c=950, g=1143\n", + "NT_187437.1: t=1623, c=790, g=974, a=1487, C=91, T=148, G=110, A=130\n", + "NT_187438.1: a=1055, g=497, t=968, c=630, C=23, T=27, A=37, G=16\n", + "NT_187439.1: c=398, t=544, g=307, a=578, G=11, A=23, C=22, T=16\n", + "NT_187440.1: T=124, C=65, G=50, A=78, c=577, a=625, t=1099, g=365\n", + "NT_187441.1: t=693, a=610, c=377, g=438, C=16, T=12, G=9, A=13\n", + "NT_187442.1: G=7, C=10, c=379, a=107, g=394, t=91, T=2, A=3\n", + "NT_187443.1: c=11402, t=17396, g=11075, a=18985, C=905, T=1436, A=1449, G=979, N=27682\n", + "NT_187444.1: c=271, t=345, g=199, a=378, A=6, G=2, T=1\n", + "NT_187445.1: C=1, T=2, G=2, A=2, a=472, g=340, t=492, c=288\n", + "NT_187446.1: C=25, A=62, T=60, G=28, t=274, a=502, g=230, c=219\n", + "NT_187447.1: t=868, a=952, c=575, g=478, A=37, G=17, T=22, C=20\n", + "NT_187448.1: g=324, t=626, a=328, c=260, C=4, A=3, G=2, T=6\n", + "NT_187449.1: A=354, G=175, C=204, T=245, c=1251, a=2363, g=1187, t=1267\n", + "NT_187450.1: g=4653, c=5574, a=9241, t=8843, A=849, T=851, G=501, C=521\n", + "NT_187451.1: G=422, T=766, a=10475, t=10207, c=6989, g=5328, A=658, C=551, N=9078\n", + "NT_187452.1: c=873, t=1339, a=1453, g=715, C=77, T=62, G=51, A=115\n", + "NT_187453.1: a=1397, t=1373, g=707, c=833, A=58, T=53, G=44, C=48\n", + "NT_187454.1: G=232, c=1062, t=2054, a=1126, g=1047, C=225, A=313, T=445\n", + "NT_187455.1: t=1842, g=1025, a=1919, c=1070, A=87, G=54, C=70, T=91\n", + "NT_187456.1: a=888, t=972, c=478, g=598, G=25, A=23, C=18, T=39\n", + "NT_187457.1: a=1699, g=782, t=1650, c=1240, C=123, T=119, G=50, A=133\n", + "NT_187458.1: A=316, T=360, C=413, G=255, t=134, c=95, a=51, g=28\n", + "NT_187459.1: T=2, g=173, t=297, c=216, a=348, A=3, G=1\n", + "NT_187460.1: a=313, t=366, c=202, g=247, G=53, A=72, T=69, C=46\n", + "NT_187461.1: C=94, A=254, a=964, g=211, t=683, c=287, T=148, G=58\n", + "NT_187462.1: A=54, C=38, G=43, T=57, c=146, a=245, t=266, g=199\n", + "NT_187463.1: G=59, A=90, T=81, C=54, a=310, g=257, t=366, c=211\n", + "NT_187464.1: c=215, t=383, g=284, a=366, A=46, T=57, C=35, G=42\n", + "NT_187465.1: a=387, c=121, t=262, g=78, A=77, C=30, T=48, G=23\n", + "NT_187466.1: C=44, A=106, G=22, T=74, t=265, a=390, g=89, c=131\n", + "NT_187467.1: t=771, c=312, a=334, g=373, T=5, G=5, C=2, A=1\n", + "NT_187468.1: a=934, c=539, t=792, g=437, G=30, A=59, C=28, T=36\n", + "NT_187469.1: t=1008, c=640, g=544, a=1089, T=67, C=53, A=90, G=39\n", + "NT_187470.1: C=100, G=70, A=126, T=107, a=2577, g=1310, c=1527, t=2503\n", + "NT_187471.1: A=9, a=306, g=208, t=317, c=185, G=7, C=7, T=9\n", + "NT_187472.1: a=442, g=171, c=225, t=207\n", + "NT_187473.1: g=268, a=400, t=415, c=215\n", + "NT_187474.1: t=760, a=727, c=401, g=471, A=12, G=6, T=5, C=5\n", + "NT_187475.1: t=495, g=305, a=483, c=253, G=1\n", + "NT_187476.1: c=229, a=378, t=342, g=194\n", + "NT_187477.1: a=603, t=569, c=391, g=310, A=3, T=2, C=2\n", + "NT_187478.1: c=197, a=364, t=402, g=253\n", + "NT_187479.1: a=296, g=196, t=315, c=163\n", + "NT_187480.1: g=297, c=363, t=533, a=584, C=4, A=5, T=1, G=1\n", + "NT_187481.1: a=470, c=292, t=462, g=260\n", + "NT_187482.1: c=364, t=522, a=567, g=297\n", + "NT_187483.1: g=228, t=382, c=263, a=429, C=3, T=1, A=1, G=1\n", + "NT_187484.1: t=500, c=338, a=543, g=277\n", + "NT_187485.1: a=281, t=330, g=199, c=156, T=3, C=1, G=1\n", + "NT_187486.1: C=23, A=22, T=16, G=14, c=370, a=595, g=323, t=567\n", + "NT_187487.1: t=310, c=166, a=299, g=188, C=3, T=8, A=7, G=9\n", + "NT_187488.1: t=1354, a=1281, c=711, g=842, T=11, A=7, G=3, C=6\n", + "NT_187489.1: a=354, t=330, c=222, g=173, A=20, G=9, C=12, T=16\n", + "NT_187490.1: g=526, a=751, t=877, c=419, G=18, A=32, C=12, T=21\n", + "NT_187491.1: g=258, c=314, a=560, t=476, T=11, A=15, C=8, G=8\n", + "NT_187492.1: a=362, c=249, t=485, g=298, C=8, T=24, A=16, G=9\n", + "NT_187493.1: c=440, a=774, g=373, t=688, A=36, G=20, T=23, C=24\n", + "NT_187494.1: g=528, a=790, c=449, t=880, G=32, T=55, A=39, C=32\n", + "NT_187495.1: A=640, g=1167, a=1884, t=1951, c=996, C=341, G=471, T=542\n", + "NT_187496.1: A=603, T=523, G=451, g=1183, t=1774, a=1720, c=1046, C=342\n", + "NT_113901.1: G=25983, A=32929, T=33305, C=25579, t=21752, c=11442, a=20540, g=11366\n", + "NT_167214.1: G=25585, A=22327, T=24283, C=25678, a=14903, t=21872, c=15042, g=12112\n", + "NT_167213.1: G=19986, A=27656, T=27601, C=19370, t=25458, g=16122, c=16131, a=26874\n", + "NT_167218.1: G=18639, A=22762, T=23297, C=17362, a=27486, t=28363, c=20068, g=21716\n", + "NT_187497.1: g=18817, t=25908, c=18340, a=25541, A=19312, G=14429, T=18841, C=14432, N=1812\n", + "NT_167220.1: g=3231, a=4502, t=4649, c=2626\n", + "NT_167208.1: G=22526, A=29729, T=29069, C=23110, a=18318, t=19946, g=10820, c=10721\n", + "NT_187499.1: G=23945, A=31203, T=29650, C=23845, t=17364, g=11619, a=19367, c=11479\n", + "NT_187498.1: G=23530, A=30404, T=31184, C=25066, c=20384, t=30166, a=30123, g=19801\n", + "NT_187500.1: G=5425, A=5627, T=6061, C=5398, a=4855, g=4287, t=5484, c=4754\n", + "NT_187501.1: G=7168, A=12865, T=11833, C=7158, t=8482, c=4396, a=9860, g=4724\n", + "NT_187503.1: g=8619, a=11759, t=12142, c=10307, G=11863, T=14081, C=11404, A=13146\n", + "NT_187502.1: G=5880, A=7622, T=9019, C=6215, c=30406, a=49846, t=58180, g=31567\n", + "NT_187505.1: G=21648, A=27820, T=29588, C=19901, a=13937, g=9226, t=17445, c=9285\n", + "NT_187504.1: G=17884, A=26745, T=27613, C=18210, t=20908, g=11849, c=10908, a=24642\n", + "NT_187508.1: G=10496, A=13691, C=9908, T=12512, c=2968, t=4507, g=3495, a=5367\n", + "NT_187506.1: G=14807, A=22997, T=23678, C=14633, a=23051, c=13913, t=23562, g=14101\n", + "NT_187509.1: G=9460, C=9470, A=7955, T=7334, g=1532, c=1473, t=1097, a=1870\n", + "NT_187510.1: T=7098, A=6702, C=5116, G=5283, g=2656, t=3918, a=3599, c=2351\n", + "NT_187512.1: G=744, T=1015, A=1154, c=10046, t=18245, g=11311, a=18629, C=707, N=9400\n", + "NT_187511.1: a=15128, c=22568, g=5074, t=28939, A=1754, C=2172, T=3108, G=781, N=66\n", + "NT_167209.1: G=16447, A=20710, T=20349, C=14963, c=12521, t=19542, a=19935, g=13251\n", + "NT_187513.1: G=20091, A=29586, T=30031, C=19458, a=27353, c=16483, t=27453, g=16284\n", + "NT_113889.1: G=20430, A=25697, T=25901, C=20062, a=20333, c=13234, t=22146, g=13344\n", + "NT_167211.2: c=33659, a=26477, t=42902, g=13759, A=15750, T=17305, C=14400, G=12120, N=236\n", + "NW_015495298.1: G=38466, A=43933, T=44635, C=38387, g=25207, t=32084, a=30952, c=24995\n", + "NW_012132914.1: T=73335, C=63977, G=63496, A=72771, g=42795, c=42977, a=53524, t=54268\n", + "NW_011332688.1: C=51383, A=48885, G=52585, T=47437, c=24357, t=26916, a=28635, g=25344\n", + "NW_025791756.1: g=124667, a=150112, t=151157, c=124447, G=256685, T=254754, C=256170, A=254694\n", + "NW_009646195.1: a=21757, c=20849, g=20301, T=21129, C=18342, A=20547, t=23448, G=19827\n", + "NW_014040926.1: G=46272, A=55835, T=53274, c=33911, g=33383, t=37584, a=40236, C=49443\n", + "NW_019805487.1: A=8659, T=9530, C=8803, G=9559, g=1677, t=2253, a=2426, c=2048\n", + "NW_018654706.1: C=15846, T=20031, A=19506, G=15709, t=25256, g=22104, a=25212, c=22472\n", + "NW_018654707.1: G=13887, T=24663, A=23634, C=13578, a=20280, c=10730, t=22809, g=10774\n", + "NW_009646194.1: C=35453, A=32348, G=36974, T=35487, a=11448, t=14514, g=10687, c=9583\n", + "NW_014040925.1: T=27323, A=25106, G=15259, C=14557, t=22355, g=9260, c=9169, a=17990\n", + "NW_017852928.1: c=44371, t=70186, g=42567, a=73273, A=95874, G=64811, C=68294, T=91644\n", + "NW_009646196.1: C=12757, A=18864, T=18271, G=11956, a=17274, c=13320, t=15965, g=13615\n", + "NW_025791753.1: G=69864, a=57375, t=56427, c=35704, g=36040, A=94902, C=70244, T=96208\n", + "NW_025791758.1: A=36107, T=34932, t=16709, c=16000, a=17711, g=16344, G=36661, C=37470\n", + "NW_025791759.1: A=43556, T=43191, G=27737, C=28590, a=37603, g=18963, t=31978, c=18829\n", + "NW_011332687.1: C=66880, A=84402, G=73144, T=92882, a=39108, t=47306, g=28337, c=28041\n", + "NW_025791754.1: t=108178, c=51547, a=108905, g=52199, T=164625, C=96185, A=168157, G=94754, N=2891\n", + "NW_014040927.1: C=22751, A=30801, t=30766, a=26696, g=23089, c=23161, T=31950, G=22991\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "NW_018654708.1: G=56661, T=48755, C=52890, A=47070, g=30111, t=31902, a=34272, c=28370\n", + "NW_025791757.1: a=24676, g=19251, t=25998, c=18793, C=28351, A=32322, T=32325, G=28710\n", + "NW_025791755.1: C=45644, A=67694, T=66791, G=46170, g=17752, a=36600, t=36502, c=18006\n", + "NW_021159988.1: A=13976, G=12540, T=14942, C=11771, t=10790, a=9574, g=5364, c=5086\n", + "NW_025791767.1: C=36162, T=51882, A=47681, G=37613, g=12986, c=12333, a=20691, t=25377\n", + "NW_025791768.1: g=7921, a=15886, t=16989, c=7657, T=39046, G=24933, A=37753, C=24200\n", + "NW_025791766.1: G=59027, A=80785, T=84361, C=58737, a=58391, g=40779, c=40772, t=66552\n", + "NW_025791763.1: g=23599, a=28462, t=29651, c=23383, A=46433, G=43645, T=48290, C=41508\n", + "NW_012132915.1: A=93127, C=69342, T=94831, G=69509, a=50921, t=48691, g=29103, c=25721\n", + "NW_025791760.1: G=73364, A=81650, T=82628, C=72790, t=37400, g=23432, a=36354, c=24164\n", + "NW_025791765.1: G=132340, A=176795, T=172603, C=132484, a=108360, g=63779, c=63456, t=105270\n", + "NW_018654709.1: G=23997, A=38371, T=35083, C=24916, g=10019, t=18087, c=9985, a=21200\n", + "NW_025791762.1: A=89684, G=74876, C=79596, T=84359, a=51805, t=48952, g=35882, c=35427\n", + "NW_025791764.1: A=24951, T=25722, G=14618, C=15016, g=6325, a=13762, t=13751, c=6236\n", + "NW_025791761.1: C=58970, T=89435, G=58735, A=88645, t=73749, g=48843, c=48820, a=68054\n", + "NW_018654710.1: g=13223, a=19067, t=18216, c=13735, A=21446, G=15779, T=22134, C=16761\n", + "NW_015495299.1: A=85907, T=83288, G=60503, C=59450, g=52799, t=70420, c=52844, a=69877\n", + "NW_021159987.1: C=27199, G=28528, T=27699, A=27473, c=7314, t=9705, g=7341, a=10716\n", + "NW_011332690.1: A=59915, G=60619, C=56416, T=63942, t=35852, g=28649, a=32489, c=27617\n", + "NW_011332689.1: G=40708, A=38058, T=36924, C=40791, g=10080, c=11833, t=14525, a=15230\n", + "NW_017363813.1: T=82617, A=78470, G=58394, C=55118, t=46668, c=25087, g=24142, a=41158\n", + "NW_025791770.1: A=39983, C=29923, G=32530, T=43439, g=35401, t=44129, c=35465, a=40440\n", + "NW_025791771.1: G=82783, C=77500, T=97230, A=91720, g=25146, t=39925, c=25442, a=36130\n", + "NW_012132916.1: C=47014, T=69538, A=65502, G=48514, a=39523, c=28484, t=46275, g=28849\n", + "NW_009646197.1: C=59597, T=78869, A=76628, G=61762, t=51649, a=50051, c=35868, g=36744\n", + "NW_021159989.1: c=20327, t=26186, a=25773, g=21352, A=32248, G=29716, C=27879, T=31962\n", + "NW_011332691.1: G=62929, A=79920, T=74857, C=66078, g=28096, c=28198, t=36343, a=38887\n", + "NW_018654711.1: C=18922, A=31479, G=18905, T=30883, c=13216, t=24463, a=24420, g=13561\n", + "NW_012132917.1: A=4763, T=3585, a=52517, t=46122, c=29003, g=24682, C=2920, G=2126\n", + "NW_019805491.1: C=11471, T=21336, A=20303, G=11921, g=6111, c=6055, a=13233, t=15097\n", + "NW_009646198.1: t=48412, g=27493, c=29120, a=49913, C=25792, G=23544, A=41878, T=38700, N=21127\n", + "NW_019805492.1: C=20409, A=30990, T=32619, G=21213, g=16203, t=30937, a=26834, c=15858\n", + "NW_019805490.1: a=16910, t=20154, c=12373, g=11704, T=62593, G=62946, A=56467, C=59738\n", + "NW_019805488.1: G=18682, A=32126, T=31408, C=18526, a=21881, c=10123, t=20993, g=10302\n", + "NW_019805489.1: A=40021, T=41578, G=23788, c=10998, a=21814, g=11155, t=25141, C=23257\n", + "NW_021159990.1: T=35641, C=53946, A=36370, G=50733, t=16313, g=12643, a=15008, c=15080\n", + "NW_025791769.1: G=67878, T=92041, A=90431, C=68984, t=46802, a=46473, g=29021, c=27712\n", + "NW_013171799.1: G=12091, T=18397, A=18535, C=12240, g=4836, a=10318, c=5055, t=9450\n", + "NW_021159993.1: A=32486, C=40615, T=29895, G=40300, c=7199, t=8303, a=9926, g=7950\n", + "NW_021159992.1: T=8612, A=8685, G=4844, C=4885, c=3699, a=9123, t=9812, g=3816\n", + "NW_025791774.1: G=28458, A=40374, T=43829, C=27554, a=19605, g=11785, c=11662, t=22424\n", + "NW_021159994.1: t=17666, c=8005, a=18559, g=8047, C=12952, T=23451, A=23446, G=13423\n", + "NW_021159991.1: c=46032, a=46681, g=28353, t=62235, G=35578, C=35947, A=42159, T=44081\n", + "NW_013171800.1: G=16601, A=29017, T=30092, C=16228, g=11858, c=11644, t=25604, a=22705\n", + "NW_021159995.1: G=28573, A=53043, T=52511, C=28559, g=17450, t=38981, a=39450, c=17542\n", + "NW_013171801.1: C=25698, A=44256, T=44762, G=24092, g=15796, t=34383, c=15759, a=31766\n", + "NW_025791772.1: G=32516, A=50072, T=48345, C=33606, a=41854, g=30586, c=30886, t=40817\n", + "NW_025791773.1: G=15758, A=24080, C=16618, T=23484, c=5736, a=11037, t=10652, g=5999\n", + "NW_017363814.1: G=54973, A=84505, T=82891, C=56768, c=24837, g=24436, t=46006, a=46259\n", + "NW_015495301.1: c=15532, t=20849, a=21691, g=12818, A=31790, G=35715, C=36136, T=30873, N=3\n", + "NW_015495300.1: c=17568, t=23989, a=24795, g=15104, A=36117, G=38728, C=38992, T=35141\n", + "NW_018654712.1: C=22879, T=28858, A=29053, G=23011, a=10666, g=5537, c=5739, t=10244\n", + "NW_025791777.1: c=169191, g=167378, a=256155, t=261102, A=307089, G=196580, C=196859, T=307334, N=239897\n", + "NW_009646199.1: T=23877, C=13438, G=14136, A=23981, t=19095, a=22511, c=11175, g=10874\n", + "NW_025791776.1: T=40928, G=37786, C=38962, A=42608, c=9955, t=13885, a=14669, g=9612\n", + "NW_025791779.1: C=33971, T=57337, G=33947, A=57860, c=19507, g=19684, a=39456, t=40723\n", + "NW_016107297.1: g=30155, a=46171, t=50132, c=30018, T=62406, G=43857, C=41357, A=58125\n", + "NW_021159996.1: A=13230, C=12289, T=13334, G=12497, g=9342, a=9887, t=10874, c=8503\n", + "NW_025791778.1: A=96012, C=69075, T=98971, G=71656, t=58983, a=52313, g=30848, c=30474\n", + "NW_025791775.1: C=4165, T=5212, G=4631, g=4142, a=3570, c=3103, t=4585, A=4992\n", + "NW_016107298.1: T=100525, G=111015, A=104968, C=113442, g=58446, c=57873, a=63423, t=63367\n", + "NW_013171803.1: A=15933, C=11612, G=11471, T=16901, t=8381, g=4866, a=8039, c=5112\n", + "NW_018654713.1: A=38548, G=29523, T=40725, C=29678, a=27462, c=22734, g=22865, t=31261\n", + "NW_012132918.1: G=17887, A=27899, T=28057, C=17630, c=39481, t=75794, g=43434, a=70568\n", + "NW_025791780.1: c=24902, a=39369, t=38689, g=24805, G=54148, A=74067, T=73341, C=53807\n", + "NW_013171802.1: A=41543, T=40009, G=24551, C=26186, t=33890, a=36766, c=21656, g=21115\n", + "NW_009646200.1: G=26127, A=47235, T=48188, C=27117, g=19437, a=38276, t=43387, c=18563\n", + "NW_021159997.1: A=15199, G=8536, T=15337, C=8661, t=9703, g=3190, a=9074, c=3565\n", + "NW_017363815.1: T=19734, C=13929, A=18878, G=14714, c=16492, t=21144, a=18451, g=16085\n", + "NW_019805493.1: T=32094, C=18356, A=30904, G=18964, a=22523, t=25675, g=11987, c=12052\n", + "NW_021159998.1: G=58864, A=46636, T=46073, C=58537, g=10458, a=12586, t=12125, c=9480\n", + "NW_017852929.1: G=15259, A=21853, T=19551, C=16532, t=18396, g=15494, c=15831, a=19213\n", + "NW_025791781.1: G=53905, A=84666, T=83232, C=53958, g=31731, c=31782, a=60802, t=64341\n", + "NW_017852930.1: A=90337, G=52420, C=54232, T=83798, t=54553, a=65763, c=34226, g=32938\n", + "NW_018654714.1: G=84014, A=112172, T=113688, C=82335, g=35840, c=35511, a=62430, t=63666\n", + "NW_012132919.1: C=26250, A=36140, T=36073, G=26953, a=17174, g=10602, t=16837, c=9903\n", + "NW_018654715.1: t=69302, g=43761, a=73199, c=43825, A=133155, G=92241, C=94133, T=131046\n", + "NW_025791785.1: C=56915, T=74109, A=76244, G=55053, a=51598, g=34201, c=34384, t=47240\n", + "NW_018654717.1: c=430646, t=615632, g=429981, a=611880, C=974541, A=1166530, G=975372, T=1162846, N=100\n", + "NW_025791782.1: T=23330, C=17594, A=21682, G=19275, g=14513, a=18031, t=21834, c=14043\n", + "NW_017852932.1: T=51425, G=43238, A=55226, C=46853, a=22624, c=13770, t=19023, g=13717\n", + "NW_025791784.1: A=21133, C=14527, T=20179, G=15466, g=7540, t=10252, c=7325, a=10483\n", + "NW_017852931.1: T=29578, G=19846, g=10963, c=10970, t=19517, a=18685, C=19179, A=28260\n", + "NW_019805494.1: T=14027, C=10807, a=17836, t=15558, g=9783, c=9865, G=10542, A=14654\n", + "NW_025791786.1: A=34340, T=36634, G=52778, C=48662, t=9134, g=8337, a=9181, c=8305\n", + "NW_025791783.1: a=3611, t=5277, g=4328, c=2865, G=5126, A=6003, C=5523, T=6557\n", + "NW_018654716.1: C=37653, T=22312, G=36618, A=23427, g=12079, c=11874, a=10799, t=10358\n", + "NW_013171805.1: T=23362, C=12904, A=23582, G=13544, c=10149, t=22004, a=18165, g=10389\n", + "NW_013171804.1: g=7907, c=8230, t=17033, a=17268, T=35268, A=35786, C=20667, G=21723\n", + "NW_025791787.1: T=60795, C=47476, A=58048, G=50624, a=34848, g=24724, t=39967, c=24235\n", + "NW_025791789.1: G=67792, A=100091, T=100288, C=67371, g=45267, c=44617, a=71723, t=72519\n", + "NW_009646201.1: A=51874, C=61344, G=62745, T=51365, g=24896, t=26566, c=22879, a=28495\n", + "NW_025791788.1: A=82576, G=59284, T=82185, C=58833, t=61127, a=58157, g=40051, c=40037\n", + "NW_021159999.1: A=2997, T=3426, G=4197, C=4315, t=2977, g=3384, c=1779, a=2333\n", + "NW_021160000.1: T=49449, C=34354, A=51331, G=38296, g=70587, t=71881, a=99776, c=39289\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "NW_021160001.1: T=53258, C=48722, A=53507, G=49300, g=17895, c=17815, t=25482, a=26965\n", + "NW_011332694.1: G=25903, A=38812, t=91911, c=52310, a=93253, g=52129, T=39717, C=26129\n", + "NW_013171806.1: T=32368, A=33091, G=18965, C=18650, g=13921, t=27336, a=26938, c=14238\n", + "NW_009646202.1: C=35868, T=52353, A=48219, G=38838, c=20934, t=30501, g=22004, a=29080\n", + "NW_025791790.1: C=37221, T=36356, A=38053, G=34923, a=14196, g=10732, c=10253, t=14528\n", + "NW_013171807.1: C=29978, T=52026, A=48736, G=32091, a=30055, c=18361, g=18661, t=34637\n", + "NW_011332692.1: C=1508, A=1753, T=2189, G=1288, a=2382, c=1476, g=1166, t=2585\n", + "NW_011332693.1: A=15744, C=16581, T=15137, G=15906, a=5863, t=6571, c=4774, g=4708\n", + "NW_015148966.2: G=50995, A=33046, T=32944, C=50549, a=9393, t=9115, g=7766, c=11191\n", + "NW_025791792.1: a=27218, g=24714, c=25655, t=27357, T=68765, C=96670, A=69575, G=94877\n", + "NW_025791794.1: G=14768, A=24436, T=25408, C=15437, g=6695, a=14170, t=15103, c=6705\n", + "NW_021160004.1: G=62235, A=43361, T=46478, C=66517, a=13058, t=13072, c=13194, g=12207\n", + "NW_021160006.1: t=19821, c=16066, a=20181, g=16054, G=20435, A=28834, T=28452, C=21085\n", + "NW_011332695.1: G=21816, A=32816, T=30350, C=21644, g=18243, t=27669, a=33420, c=17594\n", + "NW_019805496.1: G=26190, A=36373, t=40734, c=36193, a=42255, g=35753, C=27176, T=34970\n", + "NW_019805495.1: T=59990, C=35259, G=35603, A=57309, t=42455, a=35496, g=19485, c=19647\n", + "NW_017363816.1: T=21711, A=23224, c=12416, a=21189, t=17171, C=16328, G=16024, g=12814\n", + "NW_025791793.1: G=40212, A=67919, T=66716, C=40076, t=41844, g=21906, a=44453, c=21480\n", + "NW_019805498.1: G=20686, A=30636, T=32948, C=19765, t=25677, g=14598, a=22594, c=14263\n", + "NW_021160005.1: T=38032, G=34326, A=32061, C=30763, g=19367, t=23989, c=18504, a=20033\n", + "NW_021160003.1: g=11114, a=23753, t=21739, c=11911, G=18681, T=28764, C=19442, A=30015\n", + "NW_019805497.1: g=23014, a=39431, c=22206, t=44598, A=53070, G=32792, T=54870, C=31656\n", + "NW_021160002.1: a=11218, t=9077, c=4535, g=4342, G=3195, T=5280, C=2826, A=4784\n", + "NW_013171808.1: G=29116, A=39078, T=42583, C=26364, t=15088, c=7762, a=13887, g=8080\n", + "NW_009646203.1: A=14393, G=14026, T=13946, C=14004, g=13148, a=12735, c=12960, t=13663\n", + "NW_025791791.1: G=32027, A=52553, T=52054, C=31477, t=31198, a=31928, c=14922, g=15035\n", + "NW_013171809.1: C=9602, T=18748, G=12343, t=17733, a=13136, c=10074, g=10536, A=17151\n", + "NW_018654718.1: T=214811, G=199712, C=192160, A=204202, c=47431, t=71883, g=48886, a=67753\n", + "NW_021160008.1: g=13477, c=13003, t=18428, a=19571, T=34996, A=32754, C=28864, G=31438\n", + "NW_011332696.1: T=89082, G=61429, C=65429, c=49975, t=65322, g=49191, a=67134, A=93476\n", + "NW_025791795.1: C=14775, T=13503, G=14696, A=14002, a=12538, t=11251, c=11761, g=12011\n", + "NW_009646204.1: C=18994, T=32303, A=33246, g=19159, t=35161, c=18409, a=35069, G=19036\n", + "NW_018654720.1: T=38438, G=20907, A=38181, C=21875, t=19102, c=8687, a=19065, g=8553\n", + "NW_015148967.1: t=46647, a=49917, c=23274, g=21689, A=57114, G=30624, T=55212, C=31133\n", + "NW_018654719.1: A=5861, T=6050, C=6416, G=6496, t=10368, a=9678, c=9952, g=9868\n", + "NW_011332697.1: C=13425, A=11968, G=14105, T=13622, a=8094, g=8073, t=9396, c=7850\n", + "NW_019805499.1: A=28613, G=21231, T=28687, C=21498, c=10647, a=15276, t=17832, g=10355\n", + "NW_021160007.1: t=14914, c=18208, g=13625, a=17844, A=48692, G=65608, C=71472, T=47205\n", + "NW_011332699.1: G=48101, A=59310, T=61581, C=48484, g=27602, t=42954, c=28529, a=40205\n", + "NW_021160012.1: G=51123, A=66484, C=51872, T=66024, a=54106, t=53255, g=34210, c=32838\n", + "NW_021160009.1: C=131, T=263, G=138, A=301, a=2612, t=3212, g=274, c=378\n", + "NW_013171810.1: t=23738, g=11134, c=10773, a=21699, G=18267, T=32509, C=18542, A=31484\n", + "NW_009646205.1: a=4704, t=4923, c=2004, g=1977, A=6788, T=7063, G=3954, C=4042\n", + "NW_011332700.1: C=19964, A=26061, T=28491, G=20557, t=18878, a=14844, c=10065, g=9902\n", + "NW_013171811.1: g=6383, a=11038, c=5965, t=11744, T=26949, C=17664, A=25828, G=17909\n", + "NW_021160010.1: A=31169, T=32543, C=32158, G=31702, c=5874, t=10629, g=6726, a=8143\n", + "NW_021160011.1: A=10985, C=15235, G=16334, T=12285, g=2750, t=3356, c=1990, a=2459\n", + "NW_011332698.1: A=39011, G=50679, C=53227, T=35454, c=7558, t=7128, a=7500, g=5763\n", + "NW_021160013.1: G=50052, T=64277, C=50759, A=64799, t=51695, c=31923, a=52649, g=33029\n", + "NW_025791796.1: A=125115, t=94769, a=99895, c=58948, g=57949, C=83977, T=120189, G=81803\n", + "NW_021160014.1: G=28394, A=48760, C=27623, T=49032, t=37176, g=18026, a=36630, c=18587\n", + "NW_018654722.1: A=116726, T=114541, G=108403, C=109506, a=71166, g=50666, t=68109, c=51815\n", + "NW_018654721.1: G=13211, C=12850, T=19755, A=21495, t=28797, a=30413, c=22478, g=22799\n", + "NW_011332701.1: T=873796, G=716990, A=884485, C=720328, g=353224, t=525633, a=533071, c=354444, N=36991\n", + "NW_021160018.1: G=50220, C=49489, T=64177, A=63661, g=31870, a=51675, t=52420, c=33003\n", + "NW_021160017.1: c=437704, a=652048, t=677619, g=435775, A=926901, C=711545, G=716291, T=942566\n", + "NW_025791798.1: C=28603, A=36261, G=27602, t=22494, g=15590, a=22348, c=16746, T=34363\n", + "NW_012132920.1: A=187178, C=144338, T=184379, G=143763, a=110816, g=71661, t=111702, c=71501, N=1340026\n", + "NW_021160016.1: A=62817, C=71310, G=67230, T=60219, g=25075, a=27996, t=28044, c=26573\n", + "NW_025791797.1: a=118058, g=79091, t=129850, c=79949, A=202713, T=214645, C=163805, G=166463\n", + "NW_025791799.1: T=11582, C=19074, A=11691, G=18551, g=6919, t=6743, c=7209, a=5946\n", + "NW_021160015.1: t=10518, g=5674, c=5571, a=9105, G=16201, A=17519, T=17939, C=15236\n", + "NW_013171812.1: G=11656, T=9042, C=11552, A=9843, c=3853, a=4970, g=4222, t=3878\n", + "NW_019805500.1: T=87804, G=74248, A=90019, C=77052, t=45241, g=31506, a=41803, c=32742\n", + "NW_021160019.1: T=45917, A=48467, C=36531, G=38165, t=28256, g=22589, c=21767, a=29275\n", + "NW_017852933.1: T=299862, G=237724, C=239986, A=300651, a=235182, c=189257, t=236833, g=187620\n", + "NW_018654723.1: A=11939, C=13989, T=10292, G=13555, a=8379, c=6920, t=6831, g=6704\n", + "NW_013171813.1: T=48425, A=53185, C=39699, G=37661, a=30714, t=24295, c=16740, g=16744\n", + "NW_012132921.1: C=19662, A=32053, G=20745, T=33460, a=19883, g=10852, t=21910, c=10571\n", + "NW_025791800.1: A=50714, T=48536, C=43195, G=41650, t=39813, a=42384, g=33883, c=34822\n", + "NW_021160020.1: T=17892, C=22495, A=18247, G=22184, g=14206, t=13855, c=14251, a=14778\n", + "NW_017363817.1: A=47662, C=40849, T=41917, G=39735, a=30441, g=26684, t=29717, c=24914\n", + "NW_016107299.1: A=22008, T=22704, C=28033, G=26662, c=13765, a=13752, g=13657, t=14142\n", + "NW_017363819.1: C=47756, T=42968, G=47541, A=42552, t=24510, g=23186, c=22735, a=25044\n", + "NW_025791801.1: T=67762, C=54559, A=69987, G=54723, a=41123, c=22808, g=24159, t=37718\n", + "NW_025791803.1: A=85098, T=95479, C=63620, t=71093, g=47464, c=47464, a=61667, G=66656\n", + "NW_019805501.1: A=22138, G=16317, T=19282, C=17699, a=12966, g=9362, c=8775, t=10214\n", + "NW_017363818.1: A=49361, G=31158, C=31002, T=50504, a=27946, t=27648, g=14709, c=14567\n", + "NW_025791806.1: t=17008, a=15177, g=13468, c=13541, A=26823, G=29589, T=27714, C=29289\n", + "NW_025791802.1: A=35869, T=34937, C=42682, G=40240, g=18838, c=19838, a=21435, t=21039\n", + "NW_021160021.1: c=6056, t=3984, a=5131, g=4968, A=7296, C=11621, G=10960, T=6679\n", + "NW_025791805.1: A=26478, T=27490, C=43532, G=44526, a=10736, c=11797, g=12267, t=10800\n", + "NW_025791804.1: C=28044, G=31177, T=26860, A=23849, c=7391, t=10616, g=7610, a=9142\n", + "NW_019805503.1: A=30222, C=18180, T=29387, G=17586, t=20601, a=24144, c=11670, g=11396\n", + "NW_014040928.1: C=29037, T=39404, A=40054, G=28916, c=12234, t=20415, g=12074, a=22967\n", + "NW_019805502.1: T=48723, C=39106, G=39259, A=50343, t=17700, c=10131, a=15426, g=10155\n", + "NW_018654724.1: A=16097, T=17822, G=13153, a=9301, t=11340, c=6396, C=12102, g=6859\n", + "NW_013171814.1: T=78967, C=81651, G=83630, A=75434, t=24995, g=19095, c=19187, a=24428\n", + "NW_025791810.1: C=13737, A=10328, T=9691, G=14013, g=10040, a=10412, c=11038, t=9952\n", + "NW_025791809.1: t=26482, c=21013, g=20568, a=22388, C=29064, A=32538, G=36043, T=38070\n", + "NW_025791807.1: T=49890, C=41616, A=49850, G=48635, g=32860, c=32757, a=39798, t=38348\n", + "NW_021160022.1: G=73065, C=71366, T=53323, A=55371, a=60595, c=59505, t=60210, g=59730\n", + "NW_025791808.1: a=16459, c=14561, g=14025, t=16369, G=18844, A=18530, T=18439, C=20591\n", + "NW_014040929.1: t=48834, g=46681, a=49464, c=47928, G=57858, C=56807, T=49180, A=48637\n", + "NW_016107300.1: G=27673, A=29431, T=27726, C=26009, c=10574, g=11796, a=15932, t=14785\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "NW_009646206.1: C=50935, G=49358, A=58508, T=55829, t=44201, a=46043, c=32908, g=33135\n", + "NW_016107301.1: G=28399, A=30259, T=28482, C=26750, c=11186, g=12416, a=16683, t=16029, N=2\n", + "NW_016107302.1: G=28104, A=29842, T=28042, C=26361, c=11099, g=12357, a=16480, t=15846\n", + "NW_016107304.1: G=37159, A=39322, T=37541, C=34984, c=18745, g=21182, a=26334, t=25791\n", + "NW_016107303.1: G=50813, A=53450, T=50840, C=47675, c=18209, g=20187, a=26716, t=25532, N=100\n", + "NW_016107305.1: G=27041, A=28586, T=26859, C=25280, c=10186, g=11464, a=15524, t=14344, N=1\n", + "NW_016107306.1: G=29064, A=31254, T=29608, C=27539, c=12199, g=13263, a=18054, t=17216\n", + "NW_016107308.1: G=16218, A=17370, T=16186, C=15424, c=6950, g=7504, a=10591, t=9602\n", + "NW_016107307.1: G=27748, A=29527, T=27780, C=26084, c=11025, g=12336, a=16453, t=15760\n", + "NW_016107309.1: G=27221, A=28863, T=27185, C=25537, c=10369, g=11660, a=15677, t=14583\n", + "NW_016107310.1: G=38320, A=40423, T=38274, C=36003, c=14294, g=15485, a=20481, t=19838\n", + "NW_016107311.1: G=15642, A=16862, T=15715, C=14973, c=7509, g=7924, a=11086, t=10842\n", + "NW_016107313.1: G=28497, A=30342, T=28580, C=26776, c=11384, g=12602, a=16879, t=16203\n", + "NW_016107314.1: G=24556, A=25930, T=24479, C=22936, c=9443, g=10651, a=14430, t=13260, N=2, R=2, Y=1, W=1\n", + "NW_016107312.1: G=21523, A=23135, T=24384, C=23204, c=15540, a=17992, t=17683, g=13488, N=16\n", + "NW_025791811.1: A=47443, G=33908, T=49326, C=31350, g=22489, t=34861, a=32176, c=22172\n", + "NW_025791812.1: A=50071, T=57895, C=53530, G=53002, g=32439, a=34278, t=41018, c=33498\n", + "NW_025791813.1: t=38534, c=25732, g=25280, a=37666, T=64178, G=41850, A=62330, C=41182\n", + "NW_021160023.1: T=78487, G=69435, A=77222, C=69870, t=70453, g=44019, a=62662, c=47337\n", + "NW_025791815.1: G=47772, A=31530, T=32258, C=46168, g=7649, a=8592, t=8276, c=7462\n", + "NW_025791814.1: A=206095, T=201452, G=152850, C=154495, t=90468, c=57326, a=100076, g=58016\n", + "NW_021160026.1: T=65049, A=66268, C=51668, G=50980, a=55964, t=53450, c=33718, g=35271\n", + "NW_021160024.1: t=97363, g=56477, c=56984, a=100188, A=46669, C=29816, T=43819, G=29987\n", + "NW_009646207.1: a=17107, t=15496, c=13351, g=13334, T=25099, C=23551, A=25995, G=22629\n", + "NW_014040930.1: t=14929, a=16669, c=12900, g=12771, A=26074, C=24358, T=25053, G=23176\n", + "NW_009646208.1: C=26490, T=24911, G=24942, A=26029, t=12822, c=11775, a=14652, g=11406\n", + "NW_014040931.1: T=29182, A=29713, C=31037, G=29438, a=15734, g=12520, c=12989, t=14136\n", + "NW_021160025.1: c=1054, t=2273, g=1914, a=1247, C=1399, T=1428, G=1723, A=1257\n", + "NW_015148968.1: C=25503, A=24879, T=23644, G=23783, g=10610, c=11109, t=11926, a=13708\n", + "NW_015148969.2: g=6297, a=6132, t=8672, c=5964, G=21658, T=17432, A=14902, C=19983\n", + "NW_017363820.1: a=23344, g=12280, c=12774, t=22633, C=21711, T=36585, A=36704, G=21973\n", + "NW_021160031.1: T=1711, A=1899, C=1102, c=835, t=5084, a=4728, g=945, G=1131\n", + "NW_025791820.1: c=36989, a=42536, t=38211, g=37867, C=45384, T=41313, A=43843, G=44350\n", + "NW_021160028.1: A=2583, T=3194, C=1807, t=7291, a=6499, g=2958, c=2536, G=1956\n", + "NW_025791816.1: T=11794, G=8883, C=8977, a=8849, t=8568, c=4912, g=4975, A=11852\n", + "NW_021160029.1: a=11467, t=10251, g=4451, c=4243, A=12273, G=7048, T=11583, C=6876\n", + "NW_025791817.1: T=22365, C=18441, A=23151, G=18095, t=15146, c=13604, a=16247, g=13518\n", + "NW_025791819.1: C=31577, T=51020, A=51719, G=31475, c=21805, a=41321, t=42051, g=23151\n", + "NW_021160027.1: g=33813, a=50060, t=57239, c=34223, C=46856, T=68110, A=63811, G=49016\n", + "NW_021160030.1: t=4032, g=993, c=917, a=4240, T=1564, A=1390, G=770, C=772\n", + "NW_025791818.1: C=96931, T=109814, A=114935, t=59562, c=38699, a=65652, g=38077, G=96046\n", + "NW_018654725.1: t=5016, c=2813, a=4690, g=2832, G=7129, T=10652, C=6108, A=9130\n", + "NW_025791821.1: G=152302, A=174305, T=181962, C=155335, a=64645, c=37704, t=62516, g=36974\n", + "NW_009646209.1: C=10008, A=15309, G=9285, T=14843, t=15595, g=8236, c=12058, a=15816\n", + "NW_018654726.1: G=30259, A=43619, T=42665, C=30918, t=19520, a=20221, c=11227, g=11293\n", + "NT_187517.1: G=35716, A=40962, T=40908, C=36076, g=23297, c=22516, t=27786, a=29010\n", + "NT_187515.1: G=63743, T=39325, A=42141, C=65619, t=14366, c=31284, a=24310, g=23656, N=50000\n", + "NT_187514.1: C=19919, A=19732, G=20105, T=18318, c=6346, t=8009, g=6614, a=10485\n", + "NT_187520.1: C=23276, T=32840, G=23379, A=32577, g=13066, a=22276, t=24079, c=13792\n", + "NW_003315906.1: C=19095, A=17509, T=16908, G=19586, t=9597, g=8926, a=9471, c=9176\n", + "NW_003315905.1: C=21889, T=24538, A=23831, G=21607, c=21283, t=24459, g=21072, a=23760\n", + "NT_187521.1: c=4145, a=6101, g=3531, t=5254, T=8410, A=8538, C=7262, G=7017\n", + "NW_003315907.2: C=44750, A=73398, T=77340, G=45838, t=46574, g=20189, a=38010, c=20481\n", + "NT_187516.1: g=27648, a=36443, c=28329, t=39595, A=76697, T=81641, G=68681, C=66567\n", + "NT_187519.1: c=61304, a=107510, g=60178, t=98607, G=113115, A=179460, C=118207, T=173277\n", + "NT_187525.1: g=6686, t=10488, c=7027, a=12527, T=25101, G=24334, C=23765, A=26312\n", + "NT_187518.1: C=22930, A=33550, T=34363, G=23723, g=8332, a=16924, t=17996, c=8016\n", + "NT_187526.1: A=13767, T=14324, C=11844, G=12682, t=6203, g=3342, a=4841, c=3884\n", + "NT_187529.1: G=38192, A=40466, T=41923, C=41597, g=11073, a=16266, t=20417, c=13691\n", + "NT_187522.1: G=22041, C=23714, A=22599, T=23885, a=8165, g=5791, c=6183, t=8238\n", + "NW_003315908.1: A=26686, G=19100, T=28121, C=17977, c=9296, t=16625, a=16162, g=9423\n", + "NT_187524.1: G=11126, A=14589, T=15453, C=11800, g=15936, t=25577, c=16363, a=22197\n", + "NT_187531.1: T=24414, G=15140, A=22773, C=14393, a=17024, g=11009, t=22378, c=10888\n", + "NT_187530.1: G=13742, A=22167, T=22603, C=13921, t=13054, c=6387, a=12219, g=6302\n", + "NT_187528.1: G=16711, A=19900, T=21650, C=16201, a=10611, c=6307, g=6193, t=12526\n", + "NW_003571033.2: a=6849, t=8961, c=4972, g=5157, C=14458, A=18625, T=20289, G=16820\n", + "NW_003315909.1: a=15135, t=12576, g=8183, c=8880, C=16099, T=23475, G=15554, A=23919\n", + "NT_187523.1: G=30475, A=28839, T=31160, C=28236, a=12232, g=9851, c=8881, t=11904\n", + "NT_187527.1: G=38137, A=26878, T=28526, C=35730, g=10297, c=11126, t=12234, a=11238\n", + "NT_187535.1: A=19020, C=12617, T=20847, G=13717, t=15476, g=7906, a=11815, c=7789\n", + "NW_003871060.2: G=22981, A=28436, T=28411, C=23512, c=14432, a=21666, g=14469, t=19244\n", + "NW_003315913.1: T=31864, C=18612, A=30275, G=19656, t=26630, g=14576, a=24424, c=14634\n", + "NT_187537.1: c=20724, a=26195, g=19629, t=25798, A=35204, G=30721, T=35102, C=30735\n", + "NT_187533.1: G=21593, A=35150, T=32830, C=23774, g=10690, t=18637, a=20013, c=10962\n", + "NT_187536.1: t=36554, a=38892, g=19561, c=18443, T=42919, A=43425, C=24108, G=24350\n", + "NT_187538.1: G=15246, A=18494, T=17524, C=15536, g=10450, a=14177, t=11834, c=9773\n", + "NT_187532.1: C=34838, A=31422, T=33465, G=38016, g=16446, c=16027, a=17415, t=17683\n", + "NT_187534.1: G=29510, A=28996, T=28744, C=29206, a=11674, t=13298, g=10559, c=10442\n", + "NT_187539.1: G=25373, A=32171, T=29995, C=25518, c=14706, t=20079, g=14321, a=22241\n", + "NT_187540.1: G=28694, A=48021, T=46940, C=30040, g=11129, c=11462, t=21385, a=22575\n", + "NW_003315915.1: G=41197, A=74311, T=72289, C=41726, t=49048, g=22337, c=23592, a=51687\n", + "NT_187541.1: c=9714, a=19459, g=9672, t=13932, C=11951, A=18473, T=16813, G=11929\n", + "NT_167250.2: G=64932, T=107659, C=65266, A=106431, g=41566, t=81555, a=77515, c=41552\n", + "NT_187544.1: C=17874, T=30653, A=30741, c=10243, a=19595, t=20668, g=10217, G=18974\n", + "NW_003315914.1: G=20200, A=31950, T=32719, C=20085, t=19191, g=10351, a=19521, c=10519\n", + "NT_187542.1: T=22724, C=14581, A=21919, G=15743, t=13487, a=13737, c=8456, g=9265\n", + "NT_187545.1: G=28415, A=38383, T=39006, C=25156, t=23789, g=15112, a=21927, c=14156\n", + "NT_187550.1: G=27720, A=21267, T=21364, C=28348, t=7293, c=6858, a=6833, g=6453\n", + "NT_187543.1: G=36233, A=51194, T=46977, C=39816, g=12497, a=23614, c=13782, t=19983\n", + "NT_187548.1: A=30903, C=43758, T=27872, G=44082, a=7822, c=8527, t=7750, g=8329\n", + "NT_187547.1: G=45409, A=33534, T=36307, C=44852, c=7973, t=9910, a=9050, g=8675\n", + "NW_003315920.1: G=9268, A=16743, T=16780, C=9576, g=4773, c=4813, a=10269, t=10506\n", + "NW_003571036.1: A=43801, G=25225, C=25446, T=45306, t=30435, g=14014, c=14303, a=28322\n", + "NT_187551.1: C=22864, A=31758, G=22688, T=29210, t=17096, c=10863, a=19275, g=10804\n", + "NW_003315917.2: A=243776, C=155219, T=244010, G=156808, g=143765, t=215539, a=210131, c=143680, N=100000\n", + "NW_003315918.1: A=15278, G=10286, C=9594, T=16778, g=9046, t=16626, c=8800, a=14833\n", + "NT_187549.1: A=33486, T=34045, C=21249, G=22170, a=18373, g=10724, t=21967, c=10694\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "NT_187546.1: T=22666, C=19057, c=9995, t=15578, a=12783, g=10913, A=19850, G=21050\n", + "NW_003315919.1: G=20467, A=32573, T=32717, C=19725, t=20991, c=11724, a=23675, g=11587\n", + "NT_187555.1: G=20293, A=35474, C=20118, T=35428, c=10174, a=22627, t=21942, g=9752\n", + "NT_167244.2: T=403803, G=341689, C=342108, A=412965, c=178306, a=261978, t=250320, g=179662, N=2301543\n", + "NW_003315921.1: G=15960, A=23919, T=23516, C=15973, a=14860, g=8044, t=14384, c=8080\n", + "NT_187554.1: A=25863, C=15185, T=25609, G=15129, t=22961, a=23999, c=11651, g=11751\n", + "NT_187557.1: G=12814, A=14530, T=14502, C=12985, c=4115, a=5858, t=5869, g=4332\n", + "NT_187556.1: T=183137, A=194998, C=116551, a=96045, g=43173, t=86325, c=43272, G=106979\n", + "NW_004166862.2: A=35924, C=32742, G=44072, T=38242, a=10454, g=6625, t=11430, c=6334\n", + "NT_187552.1: T=36846, C=35063, G=34874, A=34308, g=11974, c=10806, t=19416, a=14249\n", + "NT_187558.1: C=36642, A=29786, T=28548, G=35237, g=5966, t=7551, a=8203, c=6019\n", + "NT_187553.1: G=51663, C=51512, T=52150, A=53663, t=18137, g=12683, c=12175, a=19799\n", + "NT_187559.1: A=27244, T=29520, C=18287, G=19873, t=22128, g=12119, a=17462, c=11533\n", + "NT_187561.1: g=17608, a=25804, t=25397, c=17416, C=26406, T=35092, G=26080, A=35783\n", + "NW_003315922.2: C=19090, A=25749, T=25765, G=19300, g=5249, t=9277, a=9151, c=5602\n", + "NT_187562.1: G=179266, A=227106, T=227252, C=181027, g=54263, a=95305, c=54350, t=93001\n", + "NT_187563.1: G=28329, A=22827, T=23160, C=30110, t=5882, g=4686, c=5464, a=5976\n", + "NT_187564.1: G=37843, A=49082, T=47818, C=38010, a=29345, g=21505, c=20749, t=27103\n", + "NT_187572.1: C=26133, A=24585, T=28923, G=27066, c=7870, t=13145, g=7928, a=9956\n", + "NT_187560.1: C=40960, T=41327, A=34730, G=47399, t=13350, g=11847, c=8899, a=11476\n", + "NT_187568.1: C=53466, A=51093, G=59110, T=60394, c=13119, a=14448, t=19329, g=11777\n", + "NT_187565.1: C=57798, G=60824, T=57731, A=56268, t=17621, a=16987, g=13646, c=11561\n", + "NT_187570.1: a=24020, g=14877, c=16557, t=23981, G=50092, A=59039, T=60979, C=50685\n", + "NT_187576.1: T=193518, C=159887, A=188011, G=169043, t=87406, c=52794, g=53228, a=81619\n", + "NT_187566.1: A=28530, G=26237, C=22444, T=27924, g=6887, c=6016, a=11025, t=12749\n", + "NT_187577.1: a=90138, g=51960, t=104752, c=50696, C=60044, T=105684, A=98864, G=62354\n", + "NT_187574.1: A=22005, T=23373, G=36693, C=32870, t=4446, g=4932, a=4627, c=4589\n", + "NT_187567.1: A=70068, T=70069, G=45168, g=26436, c=26794, a=46708, t=44551, C=44621\n", + "NT_187575.1: C=8567, G=9929, A=6857, T=7528, t=1062, c=877, g=944, a=876\n", + "NT_187573.1: C=31056, G=29781, T=24939, A=26463, a=12882, g=10948, c=11098, t=11816\n", + "NT_187569.1: C=20701, T=17692, G=18535, A=19184, g=12976, t=14505, a=15726, c=12925\n", + "NT_187571.1: C=69070, A=46445, G=67786, T=45437, g=18617, c=19013, t=20645, a=18828\n", + "NW_003315929.1: A=13297, C=11825, T=12687, G=11905, t=7708, g=4581, a=5184, c=4364\n", + "NW_003315928.1: T=35875, C=23566, G=24965, A=33784, c=7917, a=13821, t=14888, g=8172\n", + "NW_003315931.1: T=9711, A=10373, C=7669, G=7639, g=5416, t=6624, a=7686, c=4914\n", + "NW_003315930.1: A=32601, C=24068, T=33505, G=24592, t=18908, c=10617, g=10843, a=16152\n", + "NW_003315934.1: C=23468, T=34762, A=34310, G=23662, t=19495, g=11808, a=19530, c=12219\n", + "NT_187578.1: c=23989, t=44716, a=46225, g=25051, G=60486, T=89794, C=58733, A=90088\n", + "NT_187579.1: a=29234, t=34214, g=18447, c=19601, T=22550, C=16994, A=23100, G=17356\n", + "NW_003315935.1: G=38120, A=48976, T=45600, C=38909, a=45640, c=27800, t=37426, g=27331\n", + "NT_187584.1: A=27881, T=27815, C=36248, G=36020, c=12143, g=11023, a=12904, t=13058\n", + "NT_187586.1: C=42074, T=28140, G=44578, A=27924, g=17438, t=16153, c=17273, a=16553\n", + "NT_187583.1: G=23124, A=34963, T=32539, C=23313, g=16911, t=26376, a=30743, c=16090\n", + "NT_187585.1: G=64705, A=54686, T=49976, C=67675, t=15508, g=13978, c=13934, a=16402, N=31\n", + "NW_003315936.1: G=16393, A=28954, t=22694, c=9780, a=20052, g=10046, C=16494, T=29994\n", + "NW_003871073.1: G=21913, A=37948, T=37642, C=22483, t=26082, g=13344, a=28477, c=13109\n", + "NT_187582.1: T=12641, A=11159, C=12465, G=13300, t=5638, c=4103, g=4003, a=4398\n", + "NW_003871074.1: C=23351, T=34575, A=37340, G=22587, a=23835, g=12682, t=24333, c=12706\n", + "NW_003571049.1: c=8274, t=9812, a=10784, A=31002, C=33962, T=30863, g=7937, G=34679\n", + "NT_187581.1: a=13091, g=8000, t=13476, T=38983, A=37569, G=34242, C=33080, c=7728\n", + "NT_187588.1: c=2218, t=3311, g=2206, a=4096, A=8716, C=5882, T=7867, G=5794\n", + "NW_003571050.1: A=83190, C=52135, T=81322, G=48869, c=24081, t=45397, g=23172, a=50105\n", + "NW_003315938.1: A=23287, T=22711, C=15437, G=15071, t=13221, a=14934, c=8144, g=7999\n", + "NT_187587.1: T=41791, C=32498, G=30469, A=44564, t=24611, g=17788, c=18396, a=28022\n", + "NW_003315941.1: c=7857, a=14734, t=16838, g=7993, C=17072, A=27705, T=28744, G=17712\n", + "NW_003315939.2: A=25741, T=24350, C=18434, G=16796, g=15557, c=16138, t=25019, a=27143\n", + "NT_187590.1: C=20611, T=23560, G=21939, A=20206, g=6810, t=10306, a=8548, c=7518\n", + "NW_003315942.2: G=19577, A=27115, T=29134, C=19035, a=16409, c=10625, t=20021, g=10958\n", + "NT_187589.1: C=13259, T=18003, A=15426, G=14066, a=4244, t=5474, g=2666, c=2923\n", + "NW_003315940.1: T=34530, G=24922, A=32907, C=23843, a=19049, t=23142, g=13259, c=12667\n", + "NT_187591.1: C=11155, A=10143, T=9719, G=12129, c=3164, a=2762, t=4324, g=2738\n", + "NT_187594.1: G=23926, T=34619, A=35742, C=29279, g=12520, c=14841, a=21108, t=19649\n", + "NT_187597.1: T=21391, G=12142, A=22019, C=11950, c=5873, a=12767, t=11966, g=5724\n", + "NT_187593.1: G=25905, A=39968, T=36001, C=28558, g=9281, c=9503, t=14869, a=16221\n", + "NT_187595.1: A=34192, T=34712, G=19650, C=19773, c=9651, t=21100, g=9709, a=20347\n", + "NT_187592.1: G=50546, T=52902, A=55129, C=52411, g=20331, c=19079, t=27987, a=28528\n", + "NT_187596.1: T=7171, A=6343, C=8990, G=9263, g=1397, c=1152, a=1121, t=1850\n", + "NT_187598.1: A=54378, C=35409, T=51874, G=33869, t=42505, a=47449, g=28447, c=28235\n", + "NT_187599.1: A=33796, T=30313, G=37610, C=39720, a=12294, c=8494, t=10046, g=8430\n", + "NT_187601.1: C=242426, A=272582, G=244803, T=274339, g=100337, c=96878, a=137584, t=142162\n", + "NT_187602.1: G=62368, A=90201, T=89797, C=63904, t=58819, g=29947, a=54362, c=29601\n", + "NT_187600.1: T=261337, A=251738, C=237906, G=239715, a=106230, c=69694, g=68596, t=116177\n", + "NT_187604.1: G=38229, A=42928, T=45794, C=37926, t=30167, c=20016, a=27475, g=20519\n", + "NT_187603.1: G=42934, A=51755, T=49705, C=42935, g=31248, t=38835, a=39172, c=30798\n", + "NT_187605.1: G=28574, A=37798, T=37049, C=28874, t=33315, a=33654, g=22436, c=23217\n", + "NW_003315943.1: T=49528, G=38978, A=49260, C=39207, c=25152, g=25132, t=35024, a=34246\n", + "NW_003315944.2: A=76290, G=73200, C=76131, T=72060, t=23185, c=20051, g=20733, a=27123\n", + "NT_187606.1: G=72762, A=80692, T=79940, C=72907, c=25942, a=36764, g=25565, t=36308\n", + "NT_187609.1: g=7429, t=6787, a=7824, c=7381, A=7520, C=10215, T=7143, G=9683\n", + "NT_187610.1: C=22443, G=22699, A=15476, T=18064, c=13931, g=14054, a=13020, t=14506\n", + "NT_187608.1: C=40463, A=31992, G=41143, T=31879, t=22182, a=21275, g=21977, c=21946\n", + "NT_187607.1: C=342152, A=393569, G=349926, T=405423, c=265521, g=264469, t=329793, a=308847\n", + "NW_003315946.1: G=8091, A=13174, T=11642, C=9187, a=13991, g=11301, t=11552, c=10734\n", + "NW_003315945.1: G=32958, A=40042, T=38103, C=34688, a=15921, g=8959, c=8879, t=12912\n", + "NW_003315952.3: G=69361, A=64716, T=61194, C=78200, t=25205, c=23443, g=24375, a=29197\n", + "NT_187613.1: a=40401, g=39195, t=36889, c=39608, T=52339, C=64737, G=59845, A=58343\n", + "NT_187611.1: c=20899, a=20709, t=19119, g=21964, G=31360, C=32416, T=24480, A=25741\n", + "NT_187614.1: A=467130, G=423937, T=471752, C=417731, a=304656, g=245066, c=243803, t=302999\n", + "NW_003871092.1: C=9311, A=12851, G=9926, T=13678, c=4967, a=6286, g=4476, t=8850\n", + "NW_003871091.1: A=53368, T=56699, C=38330, G=41276, c=16089, t=29021, a=26990, g=16358\n", + "NW_003315953.2: G=24228, A=26050, T=27637, C=24016, t=9771, a=9065, g=6043, c=6341\n", + "NT_167251.2: T=294441, C=245460, A=291790, G=252014, t=194109, c=151693, g=152381, a=190104, N=50000\n", + "NW_003315954.1: C=27753, A=44837, T=45686, G=27803, t=23940, a=26371, g=13836, c=13769\n", + "NT_187615.1: t=24167, a=28596, g=13416, c=13974, T=46174, C=31236, A=48845, G=29419\n", + "NW_003315955.1: C=14109, T=12473, A=11192, G=14280, c=9165, t=10095, a=9434, g=9471\n", + "NT_187616.1: A=20756, G=15442, T=18153, C=16843, a=11777, g=8498, c=7976, t=9318\n", + "NT_187618.1: G=11647, A=20356, T=21701, C=12330, c=7319, t=17097, a=14080, g=7207\n", + "NT_187612.1: G=38743, A=28643, T=30354, C=39799, t=13361, c=9054, a=9808, g=9159\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "NW_003315959.1: G=21363, A=31831, T=30515, c=11012, t=17952, a=20056, g=10864, C=21196\n", + "NW_003315956.1: T=53352, G=39670, A=50773, C=39147, t=35291, g=20940, a=29541, c=21117\n", + "NW_003315957.1: g=8321, a=15107, t=13558, c=8423, T=18158, C=11503, A=18239, G=11243\n", + "NW_003315960.1: A=31174, C=18536, T=29920, G=19049, g=8234, t=16876, a=16556, c=7933, N=50000\n", + "NW_003315961.1: T=30504, G=28217, C=29775, A=29982, c=8822, a=11555, g=8489, t=12203\n", + "NW_003315958.1: A=36269, G=33776, T=33606, C=34576, c=6171, a=10391, t=7364, g=5797\n", + "NT_187622.1: A=6653, C=11534, T=6358, G=11895, c=6620, t=5290, a=6365, g=7019\n", + "NT_187617.1: c=6800, a=9788, g=7330, t=9658, A=31395, T=31436, G=36026, C=35566\n", + "NT_187621.1: C=13587, A=7489, G=12088, T=6392, g=3927, c=3662, a=3124, t=2700\n", + "NW_003315962.1: G=35923, T=55588, A=53885, C=40403, g=38307, t=58851, c=41535, a=61165\n", + "NW_003315964.2: c=16073, a=24396, g=15884, t=22757, C=18227, A=27518, T=26945, G=18422\n", + "NW_003315965.1: G=18941, A=26897, T=27976, C=18799, a=28598, c=17996, t=30292, g=18525\n", + "NT_187619.1: t=3687, c=3567, g=3781, a=3823, C=6609, A=6238, G=8398, T=7053\n", + "NW_003315963.1: C=16065, A=21580, G=17099, T=23677, t=21973, g=17655, a=20320, c=17495\n", + "NT_187620.1: G=33549, a=25908, t=28732, c=17742, g=18602, T=38575, A=37634, C=33020\n", + "NW_003571054.1: T=124070, G=130339, C=129269, A=124563, a=98707, c=87087, g=88782, t=99899, N=105000\n", + "NT_187623.1: T=19430, G=25887, A=22345, C=27732, c=5225, a=6779, t=5757, g=5619\n", + "NW_003315966.2: G=21642, A=22667, C=21774, T=20974, g=8962, t=10454, c=9092, a=12821\n", + "NT_187625.1: C=16225, T=8014, A=10372, t=1744, a=2423, g=2860, G=14477, c=2546\n", + "NT_187624.1: G=42623, A=31864, T=36651, C=40374, c=7711, a=7438, g=7092, t=9680\n", + "NW_003315967.2: g=4184, a=7696, t=9008, c=4080, G=7481, T=12404, A=11695, C=7369\n", + "NT_187628.1: g=16107, a=34109, t=22100, c=16856, T=22200, A=25117, G=14504, C=15750\n", + "NT_187627.1: G=16479, A=23232, T=23429, C=16164, t=19580, c=13300, a=18496, g=13220\n", + "NW_003315968.2: A=38033, C=21677, T=38561, G=22240, t=28483, g=13626, c=12630, a=25947\n", + "NW_003315969.2: T=12524, G=8972, A=11840, C=8910, t=10279, a=8916, c=6669, g=6543\n", + "NW_003315970.2: C=11591, A=16228, T=14980, G=11883, a=18090, t=15435, g=14486, c=13996\n", + "NT_187626.1: G=16990, C=17348, T=11722, A=13620, c=5339, t=5299, a=7236, g=5138\n", + "NT_187629.1: C=37676, A=45374, T=43610, G=37597, t=28233, a=27490, c=19937, g=19997\n", + "NT_187632.1: A=31369, T=31120, G=33542, C=35046, c=12379, t=15329, g=12114, a=15363\n", + "NT_187633.1: A=45615, G=52251, C=51245, T=46890, c=26116, g=26350, a=27425, t=28243\n", + "NT_187631.1: A=18037, G=19696, C=19349, T=18978, a=6429, t=7144, g=6116, c=5582\n", + "NT_187630.1: c=17966, g=18237, a=29804, t=24699, T=48400, C=36381, G=34488, A=53691\n", + "NW_003315972.2: A=14126, G=13144, a=11086, g=8945, c=9438, t=12276, T=14748, C=13161\n", + "NW_003315971.2: T=26405, G=24016, C=24879, A=27008, t=15794, c=13707, a=17317, g=13685\n", + "NT_187635.1: g=13622, a=25838, t=24171, c=14036, G=13156, T=19937, C=13291, A=20155\n", + "NT_187634.1: G=38596, A=33518, T=32475, C=37197, c=34312, t=39473, a=35079, g=34219\n", + "NT_187646.1: C=22610, A=32873, T=34161, G=23027, g=7924, a=16388, t=17335, c=7894\n", + "NT_187648.1: A=29094, G=23119, C=23035, T=28690, a=35481, c=22318, t=30446, g=21975\n", + "NT_187647.1: G=30714, A=28967, T=31279, C=28342, a=11974, g=9505, c=8627, t=11810\n", + "NT_187649.1: G=26470, A=26634, T=24985, C=29964, g=12906, t=14361, a=14540, c=13036\n", + "NT_187650.1: G=53113, A=71660, T=67883, C=57061, g=22573, a=42701, c=25440, t=38116\n", + "NT_187651.1: T=181591, C=114018, A=179444, G=116689, t=154559, g=100296, a=148805, c=99016, N=50000\n", + "NT_187652.1: T=22300, C=19196, c=9839, t=15262, a=12546, g=10601, A=19713, G=21500\n", + "NT_113891.3: A=812637, T=798595, G=695321, C=695596, t=512957, g=377411, a=528568, c=374180\n", + "NT_187655.1: C=23644, A=23604, G=25507, T=27001, c=6818, t=12923, a=10176, g=7286\n", + "NT_187653.1: c=8080, t=10391, a=11859, A=36310, T=34711, C=41227, G=40052, g=8239\n", + "NT_187656.1: g=6488, a=5715, t=6581, c=5589, A=15328, T=19460, C=20794, G=26756\n", + "NT_187654.1: G=57594, C=58125, T=58116, A=57512, c=18535, g=19142, t=26143, a=23520\n", + "NT_187657.1: A=34427, T=33583, C=41210, G=41472, c=15303, g=14267, a=17864, t=16499\n", + "NT_187658.1: A=110078, C=70109, T=108644, G=67646, c=37930, t=64487, g=36888, a=76567\n", + "NT_187659.1: G=25901, C=24491, A=30926, T=32305, g=18353, t=24384, c=18225, a=21799\n", + "NT_187660.1: T=836917, G=685519, A=848267, C=688847, g=339196, t=505461, a=513478, c=339722, N=404007\n", + "NT_187662.1: T=23853, G=29270, C=25470, A=21350, a=9263, g=9275, t=10369, c=8871\n", + "NT_187664.1: a=11610, g=11969, t=10942, c=12240, T=23328, C=31831, G=29929, A=25250\n", + "NW_003871093.1: C=10547, A=14861, G=11351, T=15515, c=7020, a=9275, g=6785, t=12716\n", + "NT_187661.1: T=57904, A=56490, C=52628, G=52601, c=21765, t=29558, g=22894, a=31960\n", + "NT_187665.1: A=36350, G=34359, T=32728, C=36704, c=7604, a=11451, t=8127, g=6738\n", + "NT_187663.1: T=239848, C=218065, A=240726, G=215557, t=140119, c=113127, g=112539, a=143209\n", + "NT_187666.1: T=30067, G=27959, C=29205, A=29506, c=8820, a=11539, g=8444, t=12170\n", + "NW_003571055.2: T=86950, G=90505, C=89083, A=87655, a=79955, c=73136, g=75496, t=80740, N=66000\n", + "NW_004504305.1: T=12165, G=12624, C=12617, A=10722, t=7263, c=6098, a=6449, g=6075\n", + "NT_187667.1: A=32770, G=37179, T=31479, t=37880, c=33086, g=32004, a=33552, C=36059\n", + "NT_187678.1: G=27755, A=27417, T=25597, C=31036, g=12759, t=14292, a=14566, c=13118\n", + "NT_187679.1: G=82852, A=115743, T=110010, t=46816, c=28605, a=50532, C=91878, g=29363\n", + "NT_187680.1: T=38914, A=38506, G=36865, C=37102, t=21635, c=16423, a=23512, g=16325\n", + "NT_167245.2: T=695345, G=613355, C=614136, A=709917, c=328172, a=461002, t=446156, g=330634, N=406094\n", + "NT_187681.1: g=12476, a=13006, t=13387, c=12358, A=33174, T=36471, C=44996, G=52744\n", + "NW_003571056.2: T=55608, G=60932, C=59204, A=56187, a=57041, c=54515, g=56109, t=57708, N=607000\n", + "NT_187688.1: G=26623, A=26770, T=25078, C=30137, g=12909, t=14363, a=14545, c=13033\n", + "NT_187682.1: T=28665, G=26891, C=27993, A=29118, t=16622, c=14456, a=18017, g=14341\n", + "NW_003571057.2: T=52158, G=57075, C=56065, A=52572, a=55572, c=52925, g=54136, t=55338, N=656000\n", + "NT_167246.2: T=681862, G=582235, C=579563, A=692111, c=322221, a=462317, t=450885, g=323927, N=582522\n", + "NT_187689.1: C=34435, A=30496, T=32929, G=36595, g=15418, c=14400, a=16282, t=16796\n", + "NT_167247.2: T=632115, G=565684, C=566890, A=645413, c=290449, a=403939, t=390662, g=294174, N=1038487\n", + "NT_187690.1: G=26845, A=26946, T=25212, C=30351, g=12892, t=14335, a=14559, c=13030\n", + "NW_003571058.2: T=48730, G=53072, C=52596, A=48715, a=54379, c=52547, g=53416, t=54935, N=648000\n", + "NW_003571059.2: T=57172, G=62193, C=60825, A=57898, a=58096, c=55222, g=56614, t=58663, N=536000\n", + "NT_167248.2: T=713687, G=629814, C=629663, A=723584, c=336138, a=464468, t=453569, g=338806, N=316659\n", + "NT_187691.1: G=27047, A=27263, T=25466, C=30818, g=12909, t=14397, a=14653, c=13054\n", + "NT_167249.2: T=703086, A=710501, C=598134, G=604030, t=453444, g=322911, c=320097, a=462050, N=755016\n", + "NT_187692.1: g=4582, a=7562, t=7506, c=5302, C=10856, G=10753, A=15080, T=15111\n", + "NW_003571060.1: T=136857, G=141845, C=140508, A=137735, a=112165, c=97846, g=101064, t=114080, N=5000\n", + "NW_003571061.2: T=92112, G=96550, C=95899, A=92175, a=78712, c=70607, g=71990, t=78434, N=120000\n", + "NT_187693.1: T=150608, G=156057, C=154389, A=151817, a=119935, c=104552, g=107559, t=121883\n", + "NT_187637.1: C=28391, A=28530, T=30298, G=26807, g=11187, a=16025, t=16703, c=12458\n", + "NT_187636.1: A=42335, C=42190, T=44740, G=39772, a=22530, t=23329, c=17650, g=16261\n", + "NT_187638.1: a=14996, t=15611, c=11545, g=10458, C=26013, A=26229, T=27709, G=24492\n", + "NT_187639.1: t=16786, c=12547, a=16166, g=11317, C=28475, A=28585, T=30362, G=26789\n", + "NT_187640.1: A=34845, C=34988, T=36862, G=32789, g=13086, t=19099, a=18132, c=14438\n", + "NT_187641.1: A=35061, C=34620, T=36859, G=32734, a=20159, c=15445, t=20408, g=14226\n", + "NT_187642.1: T=27584, C=25716, A=26056, G=24392, g=10342, t=15457, a=14784, c=11201\n", + "NT_187643.1: T=30343, C=28468, A=28566, G=26801, c=12456, t=16760, g=11218, a=16086\n", + "NT_187645.1: T=30303, C=28434, A=28519, G=26783, c=12497, t=16779, g=11238, a=16127\n", + "NT_187644.1: A=31260, T=32967, G=29341, C=31204, c=13042, t=17677, g=11972, a=17036\n", + "NT_187669.1: T=30313, C=28435, A=28540, G=26792, c=12478, t=16778, g=11221, a=16108\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "NT_187668.1: C=35186, T=36942, A=34910, G=32822, t=19264, a=18266, g=13129, c=14675\n", + "NT_187670.1: c=13091, a=17099, g=12013, t=17641, C=31104, A=31231, T=32975, G=29362\n", + "NT_187671.1: A=30413, C=26622, G=28627, T=29052, t=21288, g=18217, a=21190, c=15523\n", + "NT_187672.1: G=20824, A=22189, T=20965, C=19689, c=7678, g=8491, a=12269, t=11006\n", + "NT_187673.1: A=28589, T=30343, C=28438, G=26806, c=12494, t=16749, g=11211, a=16071\n", + "NT_187674.1: A=31511, C=27367, G=29173, T=29998, c=16254, t=22124, g=18709, a=22869\n", + "NT_187675.1: C=41801, A=47041, G=44496, T=44828, t=29136, c=21362, g=24022, a=29538\n", + "NT_187676.1: a=20646, g=17974, t=20946, c=15309, G=28321, T=28621, A=29784, C=26334\n", + "NT_187677.1: C=25755, A=29567, G=27558, T=28309, t=21821, g=18201, a=22421, c=15720\n", + "NT_187683.1: A=29538, C=26085, T=28354, G=27994, a=20496, g=17701, c=15232, t=20803\n", + "NT_187684.1: T=35971, C=34327, A=34104, G=31940, c=14392, t=18871, g=12867, a=18301\n", + "NT_187685.1: t=16722, c=12309, g=11263, a=16074, C=28284, A=28483, T=30250, G=26763\n", + "NT_187686.1: T=38639, G=34303, A=36502, C=36610, t=20319, c=15527, a=19781, g=14051\n", + "NT_187687.1: T=30337, C=28463, A=28573, G=26822, c=12403, t=16710, g=11190, a=16039\n", + "NT_113949.2: G=28410, A=30286, T=31982, C=30314, t=16854, c=12429, a=15759, g=11347\n", + "NC_012920.1: G=2169, A=5124, T=4094, C=5181, N=1\n", + "CPU times: user 18.8 s, sys: 7.88 s, total: 26.7 s\n", + "Wall time: 17min 21s\n" + ] + } + ], + "source": [ + "%%time\n", + "seq_counter = SeqCounter('../data/GRCh38_latest_genomic.fna', 2)\n", + "print(seq_counter)\n", + "seq_counter.output_results()" + ] + }, + { + "cell_type": "code", + "execution_count": 5, + "id": "997496a6", + "metadata": { + "ExecuteTime": { + "end_time": "2022-04-27T19:26:24.376818Z", + "start_time": "2022-04-27T19:13:11.382928Z" + } + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Path to the file: ../data/GRCh38_latest_genomic.fna\n", + "Number of threads: 4\n", + "NT_187362.1: A=3698, G=2858, T=3012, C=2663, t=4874, c=4118, a=6741, g=4068\n", + "NT_187363.1: g=15374, a=21515, t=22087, c=14581, G=11355, C=11061, T=16322, A=15387\n", + "NT_187361.1: G=21162, A=27812, T=28097, C=22678, g=14746, t=22941, a=22589, c=15030\n", + "NC_000001.11: N=18475408, t=25922550, a=25810086, c=16788841, g=16855483, C=31266202, G=31256045, T=41321614, A=41260191, M=1, R=1\n", + "NT_187365.1: A=6892, C=4131, T=7573, G=4071, t=6280, g=3102, c=3019, a=5108\n", + "NT_187366.1: t=4163, g=2926, a=4770, c=3071, C=6163, T=7662, A=7516, G=5939\n", + "NT_187364.1: g=6917, a=13516, t=14842, c=8228, G=4664, A=6616, T=7146, C=4931\n", + "NT_187367.1: G=23619, A=25329, T=25118, C=22712, a=22014, g=16992, t=23518, c=16741\n", + "NT_187368.1: G=7661, A=7857, C=7266, T=7459, g=2249, c=2243, a=3157, t=2853\n", + "NT_187369.1: C=8914, T=6771, A=6735, a=2757, g=2497, t=2655, c=2626, G=8762\n", + "NT_187370.1: G=322, A=306, T=398, C=228, a=47274, c=27078, g=34482, t=51383\n", + "NC_000002.12: N=1645292, C=32288347, G=32342686, T=45192543, A=45077416, t=26795389, c=16029833, a=26713797, g=16108217, Y=4, R=1, W=2, K=1, M=1\n", + "NT_187371.1: G=824, A=937, T=1236, C=690, a=43917, c=25879, t=48901, g=31415\n", + "NT_167215.1: G=16346, A=24462, T=24491, C=16092, g=13806, a=23453, c=13794, t=22953\n", + "NC_000004.12: N=461888, a=23144996, c=13003496, t=23171273, g=13090368, T=35452157, A=35416240, C=23233480, G=23240657\n", + "NC_000003.12: N=195417, c=13660493, t=23098663, a=22956666, A=36732425, C=25572990, T=36734639, g=13759689, G=25584570, R=1, Y=3, W=2, B=1\n", + "NT_113948.1: g=15802, a=27709, t=27480, c=17433, A=1470, T=1122, C=936, G=737\n", + "NT_113793.3: g=20528, a=31193, t=30113, c=18348, G=21940, T=31998, A=32240, C=23349\n", + "NC_000006.12: N=727456, G=21987186, A=31652686, T=31697422, C=21955005, c=11691685, a=19692791, t=19675603, g=11726144, Y=1\n", + "NC_000005.10: N=272881, t=21565326, a=21366327, c=12610126, T=33389684, A=33332767, C=23121474, G=23153233, g=12726441\n", + "NT_187372.1: T=5911, A=5976, C=4261, G=4721, c=3599, t=5785, a=6132, g=3677\n", + "NC_000009.12: N=16604164, t=13939089, a=13877112, c=8721401, T=21844659, A=21859217, C=16378410, G=16380119, g=8790543, R=1, Y=2\n", + "NC_000008.11: N=370500, G=19168338, C=19190509, A=26893423, T=26846852, t=16453794, a=16440107, g=9935449, c=9839664\n", + "NC_000007.14: N=375838, c=11811170, t=18954841, a=18791911, A=28266337, T=28260199, C=20506814, G=20482778, g=11896081, R=1, Y=2, S=1\n", + "NT_187373.1: A=6658, G=4309, T=7030, C=4473, t=5151, c=3049, g=2841, a=4543\n", + "NT_187375.1: G=4228, C=4135, T=6279, A=6457, t=5637, a=5942, c=3236, g=3136\n", + "NT_187374.1: G=22370, A=32965, T=33188, C=22477, t=20847, g=11244, c=11257, a=22497\n", + "NC_000010.11: N=534424, c=9395745, t=14885616, a=14762774, C=18243760, T=24141939, A=24113152, G=18251419, g=9468557, R=13, Y=8, W=6, M=3, K=4, B=1, S=1\n", + "NC_000014.9: N=16475569, a=10499993, g=6675322, c=6580854, t=10651102, G=11883711, C=11842904, T=16260841, A=16173422\n", + "NC_000013.11: N=16381200, a=11492777, g=6529855, c=6433785, t=11548295, G=12403750, C=12405407, T=18614422, A=18554834, Y=2, K=1\n", + "NC_000011.10: N=552880, G=18315306, A=24027062, T=24071077, t=15290877, c=9610266, a=15259668, g=9666495, C=18292991\n", + "NC_000012.12: N=137490, c=9998381, t=15837633, a=15747193, A=23622916, C=17094423, T=23654592, g=10092690, G=17089988, Y=2, M=1\n", + "NT_113796.3: G=23733, A=32705, T=32920, C=22393, t=28513, a=26775, g=17462, c=17208\n", + "NT_113888.1: G=25707, A=30293, T=30294, C=25751, t=25399, g=15599, a=22656, c=15770\n", + "NT_187377.1: G=19059, A=27849, T=27822, C=18953, a=30680, g=20466, t=29753, c=19468\n", + "NT_167219.1: G=31699, A=31839, T=31467, C=31071, t=22132, g=20001, c=17860, a=25104\n", + "NT_187378.1: c=2127, a=3758, g=2191, t=3284, A=7179, G=6531, C=6438, T=6607\n", + "NT_187379.1: C=6659, A=6980, G=6696, T=7506, g=2129, c=2272, t=3822, a=3491\n", + "NT_187381.1: G=6803, C=6597, T=8296, A=8046, a=4049, c=2514, t=4796, g=2638\n", + "NT_187380.1: G=19392, A=28449, T=28531, C=19184, g=13431, t=25920, a=24301, c=13602\n", + "NT_187382.1: g=28734, a=50914, t=55833, c=28315, A=82991, G=58583, T=83411, C=59467\n", + "NT_187383.1: G=176864, A=216050, T=215669, C=173704, a=248289, g=148705, t=241862, c=151616, N=300000\n", + "NC_000016.10: N=8532401, t=9119330, a=8971957, c=6551766, g=6618326, C=11620976, A=13586362, T=13655576, G=11681650, R=1\n", + "NC_000015.10: N=17349864, C=11569843, T=15013059, A=15007333, G=11568711, g=6257192, a=9501336, c=6183098, t=9540753\n", + "NT_187385.1: G=3874, C=2173, T=3989, A=5147, t=19894, a=35152, g=29960, c=6393, N=5969\n", + "NT_113930.2: g=16145, a=25966, t=23695, c=15239, C=22980, A=29941, T=28838, G=22787\n", + "NT_187384.1: C=9594, A=15653, T=16093, G=10755, t=65463, g=48452, c=31668, a=71804, N=11357\n", + "NC_000017.11: N=337225, G=11569134, A=13167682, T=13189069, C=11599860, t=9516192, c=7124084, g=7282366, a=9471817, R=3, S=1, K=2, Y=5, W=1\n", + "NC_000021.9: N=6621361, g=2981169, a=4844675, t=4866512, c=2936147, A=6975989, C=5249097, G=5245212, T=6989818, M=2, R=1\n", + "NC_000019.10: N=176858, G=7823665, A=7768730, T=7771954, C=7793330, t=7510799, a=7373563, c=6161250, g=6237467\n", + "NC_000020.11: N=499910, T=11065170, G=9260186, C=9219090, A=10965321, c=4697043, t=7001236, g=4834286, a=6901925\n", + "NC_000018.10: N=283680, c=5602002, t=9668263, a=9568172, T=14514556, A=14482508, C=10192453, G=10212102, g=5849549\n", + "NT_187387.1: T=6226, A=6067, G=4018, C=3877, c=3665, a=7831, t=5984, g=3875\n", + "NT_187386.1: A=25361, C=25099, T=27201, G=26924, c=9816, a=12886, t=13367, g=10100\n", + "NT_187388.1: G=27910, A=25475, T=27126, C=28004, t=23859, g=13247, a=17703, c=16448\n", + "NC_000022.11: N=11658686, G=5863266, A=6011399, T=6004578, C=5860725, a=4370815, c=3299927, t=4366147, g=3382920, R=2, W=1, Y=2\n", + "NT_187390.1: a=6823, t=7691, c=4552, g=2831, T=6224, C=4072, A=6484, G=4134\n", + "NT_187392.1: C=3135, A=4651, T=4841, G=3020, c=17576, a=27067, g=14104, t=29033, N=411\n", + "NT_187393.1: a=29171, t=20158, c=11808, g=15336, C=3679, T=5358, A=6371, G=3939, N=3555\n", + "NT_187391.1: g=46760, a=38768, t=25544, c=4872, T=14082, G=15083, A=16456, C=8072, N=12283\n", + "NT_187394.1: c=12622, t=21424, g=13238, a=22118, C=605, G=547, T=964, A=905, N=1562\n", + "NT_187395.1: t=11200, a=7176, g=7574, c=6292, G=1182, T=1778, C=940, A=1098\n", + "NC_000024.10: N=30812367, c=2259941, t=3647964, a=3591504, G=3035689, A=4294688, T=4308204, C=3025848, g=2251205, Y=2, R=1, S=1, W=1\n", + "NC_000023.11: N=1147861, c=12709203, t=21154624, a=21011311, G=17848997, A=25743496, T=25762077, C=17814577, g=12848744, Y=2, R=1, S=1, W=1\n", + "NT_187396.1: t=652, g=480, a=610, c=418, G=24, T=32, C=24, A=34\n", + "NT_187397.1: t=608, c=457, g=388, a=702, G=4, A=4, T=2\n", + "NT_187398.1: G=9, A=9, C=11, T=9, a=614, g=343, t=544, c=403\n", + "NT_187399.1: T=23, t=421, g=315, c=272, a=389, A=28, G=10, C=14\n", + "NT_187401.1: G=56, C=62, A=83, T=81, c=790, g=932, t=1230, a=1182\n", + "NT_187402.1: g=219, a=398, t=330, c=254\n", + "NT_187400.1: c=1341, a=1765, g=1144, t=1664, T=84, G=59, A=87, C=64, N=15268\n", + "NT_187403.1: g=290, t=454, c=243, a=397, G=13, T=16, A=22, C=9\n", + "NT_187404.1: T=16, G=8, A=8, t=724, c=397, a=657, g=461, C=5\n", + "NT_187405.1: g=171, a=336, t=291, c=200\n", + "NT_187406.1: a=847, g=613, t=962, c=521, N=9433, A=7, G=7, C=5, T=4\n", + "NT_187407.1: g=622, t=1030, a=1176, c=743, G=15, A=16, T=14, C=8, N=34066\n", + "NT_187408.1: a=387, g=201, t=308, c=227, C=15, T=11, A=20, G=10\n", + "NT_187409.1: G=7, A=15, T=8, t=739, g=454, a=887, c=527, C=9\n", + "NT_187410.1: t=828, a=676, c=432, g=483, T=30, G=13, C=12, A=15\n", + "NT_187411.1: g=188, c=186, a=288, t=304, C=9, A=18, G=19, T=17\n", + "NT_187412.1: T=27, C=23, G=14, A=26, g=406, c=412, a=629, t=608\n", + "NT_187413.1: t=619, c=455, a=653, g=405, T=56, A=52, C=45, G=36\n", + "NT_187414.1: T=46, C=29, A=45, G=31, a=637, t=625, c=351, g=376\n", + "NT_187415.1: A=52, a=603, c=315, t=602, g=374, C=17, G=38, T=42\n", + "NT_187416.1: A=31, t=398, c=276, a=415, g=264, C=25, T=21, G=15\n", + "NT_187417.1: A=10, G=14, T=20, C=7, g=184, a=271, c=184, t=291\n", + "NT_187418.1: g=375, t=550, c=310, a=540, G=27, A=32, T=31, C=19\n", + "NT_187419.1: C=9, G=7, T=16, t=459, c=220, a=371, g=266, A=13\n", + "NT_187421.1: c=74, a=306, g=130, t=448, A=78, C=28, T=124, G=45\n", + "NT_187422.1: g=283, a=562, t=520, c=364, C=8, A=13, G=10, T=14\n", + "NT_187423.1: g=495, a=1021, c=267, t=1442, C=76, A=203, T=303, G=113\n", + "NT_187420.1: a=95585, t=77479, g=65178, c=43975, T=23248, G=21960, C=18922, A=24682, N=21032\n", + "NT_187426.1: T=62, C=24, G=46, A=48, a=1209, t=1255, c=650, g=761\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "NT_187427.1: a=723, t=751, c=368, g=454, A=25, C=21, T=47, G=26\n", + "NT_187424.1: A=1342, T=1469, t=28404, c=14951, a=27442, g=17358, G=1027, C=909, N=81\n", + "NT_187425.1: T=2226, C=1018, G=2566, A=3253, c=7458, t=18034, a=27731, g=21725, N=28494\n", + "NT_187428.1: A=67, T=39, G=38, g=323, a=706, t=674, c=428, C=43\n", + "NT_187429.1: T=35, A=21, G=21, C=19, g=420, a=649, t=690, c=331\n", + "NT_187430.1: C=26, T=35, a=339, g=392, t=748, c=373, G=22, A=16\n", + "NT_187431.1: A=17, T=16, a=392, t=403, c=203, g=250, G=6, C=13\n", + "NT_187434.1: a=1789, g=881, t=1612, c=1105, C=54, T=94, A=87, G=52\n", + "NT_187432.1: A=315, G=166, C=207, T=262, g=4248, c=4146, a=6432, t=6913\n", + "NT_187435.1: c=1533, a=2600, g=1307, t=2395, A=104, G=47, C=68, T=73\n", + "NT_187433.1: t=41152, g=25338, a=41758, c=22565, C=1300, A=1883, T=2123, G=1549, N=458\n", + "NT_187436.1: G=93, A=90, C=73, T=148, t=2000, a=1864, c=950, g=1143\n", + "NT_187437.1: t=1623, c=790, g=974, a=1487, C=91, T=148, G=110, A=130\n", + "NT_187438.1: a=1055, g=497, t=968, c=630, C=23, T=27, A=37, G=16\n", + "NT_187439.1: c=398, t=544, g=307, a=578, G=11, A=23, C=22, T=16\n", + "NT_187440.1: T=124, C=65, G=50, A=78, c=577, a=625, t=1099, g=365\n", + "NT_187441.1: t=693, a=610, c=377, g=438, C=16, T=12, G=9, A=13\n", + "NT_187442.1: G=7, C=10, c=379, a=107, g=394, t=91, T=2, A=3\n", + "NT_187443.1: c=11402, t=17396, g=11075, a=18985, C=905, T=1436, A=1449, G=979, N=27682\n", + "NT_187444.1: c=271, t=345, g=199, a=378, A=6, G=2, T=1\n", + "NT_187445.1: C=1, T=2, G=2, A=2, a=472, g=340, t=492, c=288\n", + "NT_187446.1: C=25, A=62, T=60, G=28, t=274, a=502, g=230, c=219\n", + "NT_187447.1: t=868, a=952, c=575, g=478, A=37, G=17, T=22, C=20\n", + "NT_187448.1: g=324, t=626, a=328, c=260, C=4, A=3, G=2, T=6\n", + "NT_187449.1: A=354, G=175, C=204, T=245, c=1251, a=2363, g=1187, t=1267\n", + "NT_187450.1: g=4653, c=5574, a=9241, t=8843, A=849, T=851, G=501, C=521\n", + "NT_187451.1: G=422, T=766, a=10475, t=10207, c=6989, g=5328, A=658, C=551, N=9078\n", + "NT_187452.1: c=873, t=1339, a=1453, g=715, C=77, T=62, G=51, A=115\n", + "NT_187453.1: a=1397, t=1373, g=707, c=833, A=58, T=53, G=44, C=48\n", + "NT_187454.1: G=232, c=1062, t=2054, a=1126, g=1047, C=225, A=313, T=445\n", + "NT_187455.1: t=1842, g=1025, a=1919, c=1070, A=87, G=54, C=70, T=91\n", + "NT_187456.1: a=888, t=972, c=478, g=598, G=25, A=23, C=18, T=39\n", + "NT_187457.1: a=1699, g=782, t=1650, c=1240, C=123, T=119, G=50, A=133\n", + "NT_187458.1: A=316, T=360, C=413, G=255, t=134, c=95, a=51, g=28\n", + "NT_187459.1: T=2, g=173, t=297, c=216, a=348, A=3, G=1\n", + "NT_187460.1: a=313, t=366, c=202, g=247, G=53, A=72, T=69, C=46\n", + "NT_187461.1: C=94, A=254, a=964, g=211, t=683, c=287, T=148, G=58\n", + "NT_187462.1: A=54, C=38, G=43, T=57, c=146, a=245, t=266, g=199\n", + "NT_187463.1: G=59, A=90, T=81, C=54, a=310, g=257, t=366, c=211\n", + "NT_187464.1: c=215, t=383, g=284, a=366, A=46, T=57, C=35, G=42\n", + "NT_187465.1: a=387, c=121, t=262, g=78, A=77, C=30, T=48, G=23\n", + "NT_187466.1: C=44, A=106, G=22, T=74, t=265, a=390, g=89, c=131\n", + "NT_187467.1: t=771, c=312, a=334, g=373, T=5, G=5, C=2, A=1\n", + "NT_187468.1: a=934, c=539, t=792, g=437, G=30, A=59, C=28, T=36\n", + "NT_187469.1: t=1008, c=640, g=544, a=1089, T=67, C=53, A=90, G=39\n", + "NT_187470.1: C=100, G=70, A=126, T=107, a=2577, g=1310, c=1527, t=2503\n", + "NT_187471.1: A=9, a=306, g=208, t=317, c=185, G=7, C=7, T=9\n", + "NT_187472.1: a=442, g=171, c=225, t=207\n", + "NT_187473.1: g=268, a=400, t=415, c=215\n", + "NT_187474.1: t=760, a=727, c=401, g=471, A=12, G=6, T=5, C=5\n", + "NT_187475.1: t=495, g=305, a=483, c=253, G=1\n", + "NT_187476.1: c=229, a=378, t=342, g=194\n", + "NT_187477.1: a=603, t=569, c=391, g=310, A=3, T=2, C=2\n", + "NT_187478.1: c=197, a=364, t=402, g=253\n", + "NT_187479.1: a=296, g=196, t=315, c=163\n", + "NT_187480.1: g=297, c=363, t=533, a=584, C=4, A=5, T=1, G=1\n", + "NT_187481.1: a=470, c=292, t=462, g=260\n", + "NT_187482.1: c=364, t=522, a=567, g=297\n", + "NT_187483.1: g=228, t=382, c=263, a=429, C=3, T=1, A=1, G=1\n", + "NT_187484.1: t=500, c=338, a=543, g=277\n", + "NT_187485.1: a=281, t=330, g=199, c=156, T=3, C=1, G=1\n", + "NT_187486.1: C=23, A=22, T=16, G=14, c=370, a=595, g=323, t=567\n", + "NT_187487.1: t=310, c=166, a=299, g=188, C=3, T=8, A=7, G=9\n", + "NT_187488.1: t=1354, a=1281, c=711, g=842, T=11, A=7, G=3, C=6\n", + "NT_187489.1: a=354, t=330, c=222, g=173, A=20, G=9, C=12, T=16\n", + "NT_187490.1: g=526, a=751, t=877, c=419, G=18, A=32, C=12, T=21\n", + "NT_187491.1: g=258, c=314, a=560, t=476, T=11, A=15, C=8, G=8\n", + "NT_187492.1: a=362, c=249, t=485, g=298, C=8, T=24, A=16, G=9\n", + "NT_187493.1: c=440, a=774, g=373, t=688, A=36, G=20, T=23, C=24\n", + "NT_187494.1: g=528, a=790, c=449, t=880, G=32, T=55, A=39, C=32\n", + "NT_187495.1: A=640, g=1167, a=1884, t=1951, c=996, C=341, G=471, T=542\n", + "NT_187496.1: A=603, T=523, G=451, g=1183, t=1774, a=1720, c=1046, C=342\n", + "NT_113901.1: G=25983, A=32929, T=33305, C=25579, t=21752, c=11442, a=20540, g=11366\n", + "NT_167214.1: G=25585, A=22327, T=24283, C=25678, a=14903, t=21872, c=15042, g=12112\n", + "NT_167213.1: G=19986, A=27656, T=27601, C=19370, t=25458, g=16122, c=16131, a=26874\n", + "NT_167220.1: g=3231, a=4502, t=4649, c=2626\n", + "NT_187497.1: g=18817, t=25908, c=18340, a=25541, A=19312, G=14429, T=18841, C=14432, N=1812\n", + "NT_167218.1: G=18639, A=22762, T=23297, C=17362, a=27486, t=28363, c=20068, g=21716\n", + "NT_167208.1: G=22526, A=29729, T=29069, C=23110, a=18318, t=19946, g=10820, c=10721\n", + "NT_187501.1: G=7168, A=12865, T=11833, C=7158, t=8482, c=4396, a=9860, g=4724\n", + "NT_187500.1: G=5425, A=5627, T=6061, C=5398, a=4855, g=4287, t=5484, c=4754\n", + "NT_187499.1: G=23945, A=31203, T=29650, C=23845, t=17364, g=11619, a=19367, c=11479\n", + "NT_187498.1: G=23530, A=30404, T=31184, C=25066, c=20384, t=30166, a=30123, g=19801\n", + "NT_187503.1: g=8619, a=11759, t=12142, c=10307, G=11863, T=14081, C=11404, A=13146\n", + "NT_187504.1: G=17884, A=26745, T=27613, C=18210, t=20908, g=11849, c=10908, a=24642\n", + "NT_187505.1: G=21648, A=27820, T=29588, C=19901, a=13937, g=9226, t=17445, c=9285\n", + "NT_187502.1: G=5880, A=7622, T=9019, C=6215, c=30406, a=49846, t=58180, g=31567\n", + "NT_187509.1: G=9460, C=9470, A=7955, T=7334, g=1532, c=1473, t=1097, a=1870\n", + "NT_187510.1: T=7098, A=6702, C=5116, G=5283, g=2656, t=3918, a=3599, c=2351\n", + "NT_187508.1: G=10496, A=13691, C=9908, T=12512, c=2968, t=4507, g=3495, a=5367\n", + "NT_187506.1: G=14807, A=22997, T=23678, C=14633, a=23051, c=13913, t=23562, g=14101\n", + "NT_187512.1: G=744, T=1015, A=1154, c=10046, t=18245, g=11311, a=18629, C=707, N=9400\n", + "NT_187511.1: a=15128, c=22568, g=5074, t=28939, A=1754, C=2172, T=3108, G=781, N=66\n", + "NT_167209.1: G=16447, A=20710, T=20349, C=14963, c=12521, t=19542, a=19935, g=13251\n", + "NT_187513.1: G=20091, A=29586, T=30031, C=19458, a=27353, c=16483, t=27453, g=16284\n", + "NT_113889.1: G=20430, A=25697, T=25901, C=20062, a=20333, c=13234, t=22146, g=13344\n", + "NT_167211.2: c=33659, a=26477, t=42902, g=13759, A=15750, T=17305, C=14400, G=12120, N=236\n", + "NW_015495298.1: G=38466, A=43933, T=44635, C=38387, g=25207, t=32084, a=30952, c=24995\n", + "NW_012132914.1: T=73335, C=63977, G=63496, A=72771, g=42795, c=42977, a=53524, t=54268\n", + "NW_009646195.1: a=21757, c=20849, g=20301, T=21129, C=18342, A=20547, t=23448, G=19827\n", + "NW_011332688.1: C=51383, A=48885, G=52585, T=47437, c=24357, t=26916, a=28635, g=25344\n", + "NW_014040926.1: G=46272, A=55835, T=53274, c=33911, g=33383, t=37584, a=40236, C=49443\n", + "NW_025791756.1: g=124667, a=150112, t=151157, c=124447, G=256685, T=254754, C=256170, A=254694\n", + "NW_019805487.1: A=8659, T=9530, C=8803, G=9559, g=1677, t=2253, a=2426, c=2048\n", + "NW_018654707.1: G=13887, T=24663, A=23634, C=13578, a=20280, c=10730, t=22809, g=10774\n", + "NW_018654706.1: C=15846, T=20031, A=19506, G=15709, t=25256, g=22104, a=25212, c=22472\n", + "NW_009646194.1: C=35453, A=32348, G=36974, T=35487, a=11448, t=14514, g=10687, c=9583\n", + "NW_009646196.1: C=12757, A=18864, T=18271, G=11956, a=17274, c=13320, t=15965, g=13615\n", + "NW_014040925.1: T=27323, A=25106, G=15259, C=14557, t=22355, g=9260, c=9169, a=17990\n", + "NW_025791753.1: G=69864, a=57375, t=56427, c=35704, g=36040, A=94902, C=70244, T=96208\n", + "NW_017852928.1: c=44371, t=70186, g=42567, a=73273, A=95874, G=64811, C=68294, T=91644\n", + "NW_025791758.1: A=36107, T=34932, t=16709, c=16000, a=17711, g=16344, G=36661, C=37470\n", + "NW_025791759.1: A=43556, T=43191, G=27737, C=28590, a=37603, g=18963, t=31978, c=18829\n", + "NW_011332687.1: C=66880, A=84402, G=73144, T=92882, a=39108, t=47306, g=28337, c=28041\n", + "NW_025791754.1: t=108178, c=51547, a=108905, g=52199, T=164625, C=96185, A=168157, G=94754, N=2891\n", + "NW_014040927.1: C=22751, A=30801, t=30766, a=26696, g=23089, c=23161, T=31950, G=22991\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "NW_025791757.1: a=24676, g=19251, t=25998, c=18793, C=28351, A=32322, T=32325, G=28710\n", + "NW_018654708.1: G=56661, T=48755, C=52890, A=47070, g=30111, t=31902, a=34272, c=28370\n", + "NW_025791755.1: C=45644, A=67694, T=66791, G=46170, g=17752, a=36600, t=36502, c=18006\n", + "NW_021159988.1: A=13976, G=12540, T=14942, C=11771, t=10790, a=9574, g=5364, c=5086\n", + "NW_025791768.1: g=7921, a=15886, t=16989, c=7657, T=39046, G=24933, A=37753, C=24200\n", + "NW_025791767.1: C=36162, T=51882, A=47681, G=37613, g=12986, c=12333, a=20691, t=25377\n", + "NW_025791766.1: G=59027, A=80785, T=84361, C=58737, a=58391, g=40779, c=40772, t=66552\n", + "NW_025791763.1: g=23599, a=28462, t=29651, c=23383, A=46433, G=43645, T=48290, C=41508\n", + "NW_025791760.1: G=73364, A=81650, T=82628, C=72790, t=37400, g=23432, a=36354, c=24164\n", + "NW_012132915.1: A=93127, C=69342, T=94831, G=69509, a=50921, t=48691, g=29103, c=25721\n", + "NW_025791765.1: G=132340, A=176795, T=172603, C=132484, a=108360, g=63779, c=63456, t=105270\n", + "NW_025791764.1: A=24951, T=25722, G=14618, C=15016, g=6325, a=13762, t=13751, c=6236\n", + "NW_018654709.1: G=23997, A=38371, T=35083, C=24916, g=10019, t=18087, c=9985, a=21200\n", + "NW_025791762.1: A=89684, G=74876, C=79596, T=84359, a=51805, t=48952, g=35882, c=35427\n", + "NW_025791761.1: C=58970, T=89435, G=58735, A=88645, t=73749, g=48843, c=48820, a=68054\n", + "NW_018654710.1: g=13223, a=19067, t=18216, c=13735, A=21446, G=15779, T=22134, C=16761\n", + "NW_021159987.1: C=27199, G=28528, T=27699, A=27473, c=7314, t=9705, g=7341, a=10716\n", + "NW_011332690.1: A=59915, G=60619, C=56416, T=63942, t=35852, g=28649, a=32489, c=27617\n", + "NW_015495299.1: A=85907, T=83288, G=60503, C=59450, g=52799, t=70420, c=52844, a=69877\n", + "NW_011332689.1: G=40708, A=38058, T=36924, C=40791, g=10080, c=11833, t=14525, a=15230\n", + "NW_025791770.1: A=39983, C=29923, G=32530, T=43439, g=35401, t=44129, c=35465, a=40440\n", + "NW_017363813.1: T=82617, A=78470, G=58394, C=55118, t=46668, c=25087, g=24142, a=41158\n", + "NW_025791771.1: G=82783, C=77500, T=97230, A=91720, g=25146, t=39925, c=25442, a=36130\n", + "NW_021159989.1: c=20327, t=26186, a=25773, g=21352, A=32248, G=29716, C=27879, T=31962\n", + "NW_012132916.1: C=47014, T=69538, A=65502, G=48514, a=39523, c=28484, t=46275, g=28849\n", + "NW_011332691.1: G=62929, A=79920, T=74857, C=66078, g=28096, c=28198, t=36343, a=38887\n", + "NW_009646197.1: C=59597, T=78869, A=76628, G=61762, t=51649, a=50051, c=35868, g=36744\n", + "NW_019805491.1: C=11471, T=21336, A=20303, G=11921, g=6111, c=6055, a=13233, t=15097\n", + "NW_012132917.1: A=4763, T=3585, a=52517, t=46122, c=29003, g=24682, C=2920, G=2126\n", + "NW_018654711.1: C=18922, A=31479, G=18905, T=30883, c=13216, t=24463, a=24420, g=13561\n", + "NW_009646198.1: t=48412, g=27493, c=29120, a=49913, C=25792, G=23544, A=41878, T=38700, N=21127\n", + "NW_019805492.1: C=20409, A=30990, T=32619, G=21213, g=16203, t=30937, a=26834, c=15858\n", + "NW_019805488.1: G=18682, A=32126, T=31408, C=18526, a=21881, c=10123, t=20993, g=10302\n", + "NW_019805490.1: a=16910, t=20154, c=12373, g=11704, T=62593, G=62946, A=56467, C=59738\n", + "NW_019805489.1: A=40021, T=41578, G=23788, c=10998, a=21814, g=11155, t=25141, C=23257\n", + "NW_013171799.1: G=12091, T=18397, A=18535, C=12240, g=4836, a=10318, c=5055, t=9450\n", + "NW_021159993.1: A=32486, C=40615, T=29895, G=40300, c=7199, t=8303, a=9926, g=7950\n", + "NW_021159990.1: T=35641, C=53946, A=36370, G=50733, t=16313, g=12643, a=15008, c=15080\n", + "NW_025791769.1: G=67878, T=92041, A=90431, C=68984, t=46802, a=46473, g=29021, c=27712\n", + "NW_021159992.1: T=8612, A=8685, G=4844, C=4885, c=3699, a=9123, t=9812, g=3816\n", + "NW_021159994.1: t=17666, c=8005, a=18559, g=8047, C=12952, T=23451, A=23446, G=13423\n", + "NW_025791774.1: G=28458, A=40374, T=43829, C=27554, a=19605, g=11785, c=11662, t=22424\n", + "NW_021159991.1: c=46032, a=46681, g=28353, t=62235, G=35578, C=35947, A=42159, T=44081\n", + "NW_013171801.1: C=25698, A=44256, T=44762, G=24092, g=15796, t=34383, c=15759, a=31766\n", + "NW_021159995.1: G=28573, A=53043, T=52511, C=28559, g=17450, t=38981, a=39450, c=17542\n", + "NW_013171800.1: G=16601, A=29017, T=30092, C=16228, g=11858, c=11644, t=25604, a=22705\n", + "NW_025791772.1: G=32516, A=50072, T=48345, C=33606, a=41854, g=30586, c=30886, t=40817\n", + "NW_025791773.1: G=15758, A=24080, C=16618, T=23484, c=5736, a=11037, t=10652, g=5999\n", + "NW_015495301.1: c=15532, t=20849, a=21691, g=12818, A=31790, G=35715, C=36136, T=30873, N=3\n", + "NW_015495300.1: c=17568, t=23989, a=24795, g=15104, A=36117, G=38728, C=38992, T=35141\n", + "NW_017363814.1: G=54973, A=84505, T=82891, C=56768, c=24837, g=24436, t=46006, a=46259\n", + "NW_018654712.1: C=22879, T=28858, A=29053, G=23011, a=10666, g=5537, c=5739, t=10244\n", + "NW_009646199.1: T=23877, C=13438, G=14136, A=23981, t=19095, a=22511, c=11175, g=10874\n", + "NW_025791776.1: T=40928, G=37786, C=38962, A=42608, c=9955, t=13885, a=14669, g=9612\n", + "NW_025791777.1: c=169191, g=167378, a=256155, t=261102, A=307089, G=196580, C=196859, T=307334, N=239897\n", + "NW_021159996.1: A=13230, C=12289, T=13334, G=12497, g=9342, a=9887, t=10874, c=8503\n", + "NW_025791779.1: C=33971, T=57337, G=33947, A=57860, c=19507, g=19684, a=39456, t=40723\n", + "NW_016107297.1: g=30155, a=46171, t=50132, c=30018, T=62406, G=43857, C=41357, A=58125\n", + "NW_025791778.1: A=96012, C=69075, T=98971, G=71656, t=58983, a=52313, g=30848, c=30474\n", + "NW_025791775.1: C=4165, T=5212, G=4631, g=4142, a=3570, c=3103, t=4585, A=4992\n", + "NW_013171803.1: A=15933, C=11612, G=11471, T=16901, t=8381, g=4866, a=8039, c=5112\n", + "NW_018654713.1: A=38548, G=29523, T=40725, C=29678, a=27462, c=22734, g=22865, t=31261\n", + "NW_016107298.1: T=100525, G=111015, A=104968, C=113442, g=58446, c=57873, a=63423, t=63367\n", + "NW_009646200.1: G=26127, A=47235, T=48188, C=27117, g=19437, a=38276, t=43387, c=18563\n", + "NW_012132918.1: G=17887, A=27899, T=28057, C=17630, c=39481, t=75794, g=43434, a=70568\n", + "NW_025791780.1: c=24902, a=39369, t=38689, g=24805, G=54148, A=74067, T=73341, C=53807\n", + "NW_013171802.1: A=41543, T=40009, G=24551, C=26186, t=33890, a=36766, c=21656, g=21115\n", + "NW_021159997.1: A=15199, G=8536, T=15337, C=8661, t=9703, g=3190, a=9074, c=3565\n", + "NW_017363815.1: T=19734, C=13929, A=18878, G=14714, c=16492, t=21144, a=18451, g=16085\n", + "NW_019805493.1: T=32094, C=18356, A=30904, G=18964, a=22523, t=25675, g=11987, c=12052\n", + "NW_021159998.1: G=58864, A=46636, T=46073, C=58537, g=10458, a=12586, t=12125, c=9480\n", + "NW_017852929.1: G=15259, A=21853, T=19551, C=16532, t=18396, g=15494, c=15831, a=19213\n", + "NW_025791781.1: G=53905, A=84666, T=83232, C=53958, g=31731, c=31782, a=60802, t=64341\n", + "NW_017852930.1: A=90337, G=52420, C=54232, T=83798, t=54553, a=65763, c=34226, g=32938\n", + "NW_018654714.1: G=84014, A=112172, T=113688, C=82335, g=35840, c=35511, a=62430, t=63666\n", + "NW_012132919.1: C=26250, A=36140, T=36073, G=26953, a=17174, g=10602, t=16837, c=9903\n", + "NW_025791785.1: C=56915, T=74109, A=76244, G=55053, a=51598, g=34201, c=34384, t=47240\n", + "NW_018654715.1: t=69302, g=43761, a=73199, c=43825, A=133155, G=92241, C=94133, T=131046\n", + "NW_018654717.1: c=430646, t=615632, g=429981, a=611880, C=974541, A=1166530, G=975372, T=1162846, N=100\n", + "NW_025791782.1: T=23330, C=17594, A=21682, G=19275, g=14513, a=18031, t=21834, c=14043\n", + "NW_025791784.1: A=21133, C=14527, T=20179, G=15466, g=7540, t=10252, c=7325, a=10483\n", + "NW_017852932.1: T=51425, G=43238, A=55226, C=46853, a=22624, c=13770, t=19023, g=13717\n", + "NW_017852931.1: T=29578, G=19846, g=10963, c=10970, t=19517, a=18685, C=19179, A=28260\n", + "NW_025791783.1: a=3611, t=5277, g=4328, c=2865, G=5126, A=6003, C=5523, T=6557\n", + "NW_019805494.1: T=14027, C=10807, a=17836, t=15558, g=9783, c=9865, G=10542, A=14654\n", + "NW_018654716.1: C=37653, T=22312, G=36618, A=23427, g=12079, c=11874, a=10799, t=10358\n", + "NW_025791786.1: A=34340, T=36634, G=52778, C=48662, t=9134, g=8337, a=9181, c=8305\n", + "NW_013171805.1: T=23362, C=12904, A=23582, G=13544, c=10149, t=22004, a=18165, g=10389\n", + "NW_013171804.1: g=7907, c=8230, t=17033, a=17268, T=35268, A=35786, C=20667, G=21723\n", + "NW_025791787.1: T=60795, C=47476, A=58048, G=50624, a=34848, g=24724, t=39967, c=24235\n", + "NW_025791789.1: G=67792, A=100091, T=100288, C=67371, g=45267, c=44617, a=71723, t=72519\n", + "NW_021159999.1: A=2997, T=3426, G=4197, C=4315, t=2977, g=3384, c=1779, a=2333\n", + "NW_009646201.1: A=51874, C=61344, G=62745, T=51365, g=24896, t=26566, c=22879, a=28495\n", + "NW_021160000.1: T=49449, C=34354, A=51331, G=38296, g=70587, t=71881, a=99776, c=39289\n", + "NW_025791788.1: A=82576, G=59284, T=82185, C=58833, t=61127, a=58157, g=40051, c=40037\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "NW_013171806.1: T=32368, A=33091, G=18965, C=18650, g=13921, t=27336, a=26938, c=14238\n", + "NW_009646202.1: C=35868, T=52353, A=48219, G=38838, c=20934, t=30501, g=22004, a=29080\n", + "NW_021160001.1: T=53258, C=48722, A=53507, G=49300, g=17895, c=17815, t=25482, a=26965\n", + "NW_011332694.1: G=25903, A=38812, t=91911, c=52310, a=93253, g=52129, T=39717, C=26129\n", + "NW_011332692.1: C=1508, A=1753, T=2189, G=1288, a=2382, c=1476, g=1166, t=2585\n", + "NW_011332693.1: A=15744, C=16581, T=15137, G=15906, a=5863, t=6571, c=4774, g=4708\n", + "NW_025791790.1: C=37221, T=36356, A=38053, G=34923, a=14196, g=10732, c=10253, t=14528\n", + "NW_013171807.1: C=29978, T=52026, A=48736, G=32091, a=30055, c=18361, g=18661, t=34637\n", + "NW_025791794.1: G=14768, A=24436, T=25408, C=15437, g=6695, a=14170, t=15103, c=6705\n", + "NW_021160004.1: G=62235, A=43361, T=46478, C=66517, a=13058, t=13072, c=13194, g=12207\n", + "NW_015148966.2: G=50995, A=33046, T=32944, C=50549, a=9393, t=9115, g=7766, c=11191\n", + "NW_025791792.1: a=27218, g=24714, c=25655, t=27357, T=68765, C=96670, A=69575, G=94877\n", + "NW_021160006.1: t=19821, c=16066, a=20181, g=16054, G=20435, A=28834, T=28452, C=21085\n", + "NW_011332695.1: G=21816, A=32816, T=30350, C=21644, g=18243, t=27669, a=33420, c=17594\n", + "NW_019805496.1: G=26190, A=36373, t=40734, c=36193, a=42255, g=35753, C=27176, T=34970\n", + "NW_019805495.1: T=59990, C=35259, G=35603, A=57309, t=42455, a=35496, g=19485, c=19647\n", + "NW_017363816.1: T=21711, A=23224, c=12416, a=21189, t=17171, C=16328, G=16024, g=12814\n", + "NW_019805498.1: G=20686, A=30636, T=32948, C=19765, t=25677, g=14598, a=22594, c=14263\n", + "NW_021160005.1: T=38032, G=34326, A=32061, C=30763, g=19367, t=23989, c=18504, a=20033\n", + "NW_025791793.1: G=40212, A=67919, T=66716, C=40076, t=41844, g=21906, a=44453, c=21480\n", + "NW_021160002.1: a=11218, t=9077, c=4535, g=4342, G=3195, T=5280, C=2826, A=4784\n", + "NW_021160003.1: g=11114, a=23753, t=21739, c=11911, G=18681, T=28764, C=19442, A=30015\n", + "NW_013171808.1: G=29116, A=39078, T=42583, C=26364, t=15088, c=7762, a=13887, g=8080\n", + "NW_019805497.1: g=23014, a=39431, c=22206, t=44598, A=53070, G=32792, T=54870, C=31656\n", + "NW_009646203.1: A=14393, G=14026, T=13946, C=14004, g=13148, a=12735, c=12960, t=13663\n", + "NW_013171809.1: C=9602, T=18748, G=12343, t=17733, a=13136, c=10074, g=10536, A=17151\n", + "NW_025791791.1: G=32027, A=52553, T=52054, C=31477, t=31198, a=31928, c=14922, g=15035\n", + "NW_018654718.1: T=214811, G=199712, C=192160, A=204202, c=47431, t=71883, g=48886, a=67753\n", + "NW_025791795.1: C=14775, T=13503, G=14696, A=14002, a=12538, t=11251, c=11761, g=12011\n", + "NW_021160008.1: g=13477, c=13003, t=18428, a=19571, T=34996, A=32754, C=28864, G=31438\n", + "NW_009646204.1: C=18994, T=32303, A=33246, g=19159, t=35161, c=18409, a=35069, G=19036\n", + "NW_011332696.1: T=89082, G=61429, C=65429, c=49975, t=65322, g=49191, a=67134, A=93476\n", + "NW_018654719.1: A=5861, T=6050, C=6416, G=6496, t=10368, a=9678, c=9952, g=9868\n", + "NW_011332697.1: C=13425, A=11968, G=14105, T=13622, a=8094, g=8073, t=9396, c=7850\n", + "NW_018654720.1: T=38438, G=20907, A=38181, C=21875, t=19102, c=8687, a=19065, g=8553\n", + "NW_015148967.1: t=46647, a=49917, c=23274, g=21689, A=57114, G=30624, T=55212, C=31133\n", + "NW_019805499.1: A=28613, G=21231, T=28687, C=21498, c=10647, a=15276, t=17832, g=10355\n", + "NW_021160007.1: t=14914, c=18208, g=13625, a=17844, A=48692, G=65608, C=71472, T=47205\n", + "NW_011332699.1: G=48101, A=59310, T=61581, C=48484, g=27602, t=42954, c=28529, a=40205\n", + "NW_021160012.1: G=51123, A=66484, C=51872, T=66024, a=54106, t=53255, g=34210, c=32838\n", + "NW_021160009.1: C=131, T=263, G=138, A=301, a=2612, t=3212, g=274, c=378\n", + "NW_009646205.1: a=4704, t=4923, c=2004, g=1977, A=6788, T=7063, G=3954, C=4042\n", + "NW_013171810.1: t=23738, g=11134, c=10773, a=21699, G=18267, T=32509, C=18542, A=31484\n", + "NW_011332700.1: C=19964, A=26061, T=28491, G=20557, t=18878, a=14844, c=10065, g=9902\n", + "NW_021160011.1: A=10985, C=15235, G=16334, T=12285, g=2750, t=3356, c=1990, a=2459\n", + "NW_013171811.1: g=6383, a=11038, c=5965, t=11744, T=26949, C=17664, A=25828, G=17909\n", + "NW_021160010.1: A=31169, T=32543, C=32158, G=31702, c=5874, t=10629, g=6726, a=8143\n", + "NW_011332698.1: A=39011, G=50679, C=53227, T=35454, c=7558, t=7128, a=7500, g=5763\n", + "NW_021160014.1: G=28394, A=48760, C=27623, T=49032, t=37176, g=18026, a=36630, c=18587\n", + "NW_021160013.1: G=50052, T=64277, C=50759, A=64799, t=51695, c=31923, a=52649, g=33029\n", + "NW_018654722.1: A=116726, T=114541, G=108403, C=109506, a=71166, g=50666, t=68109, c=51815\n", + "NW_025791796.1: A=125115, t=94769, a=99895, c=58948, g=57949, C=83977, T=120189, G=81803\n", + "NW_018654721.1: G=13211, C=12850, T=19755, A=21495, t=28797, a=30413, c=22478, g=22799\n", + "NW_021160018.1: G=50220, C=49489, T=64177, A=63661, g=31870, a=51675, t=52420, c=33003\n", + "NW_011332701.1: T=873796, G=716990, A=884485, C=720328, g=353224, t=525633, a=533071, c=354444, N=36991\n", + "NW_021160017.1: c=437704, a=652048, t=677619, g=435775, A=926901, C=711545, G=716291, T=942566\n", + "NW_025791798.1: C=28603, A=36261, G=27602, t=22494, g=15590, a=22348, c=16746, T=34363\n", + "NW_021160016.1: A=62817, C=71310, G=67230, T=60219, g=25075, a=27996, t=28044, c=26573\n", + "NW_025791797.1: a=118058, g=79091, t=129850, c=79949, A=202713, T=214645, C=163805, G=166463\n", + "NW_012132920.1: A=187178, C=144338, T=184379, G=143763, a=110816, g=71661, t=111702, c=71501, N=1340026\n", + "NW_013171812.1: G=11656, T=9042, C=11552, A=9843, c=3853, a=4970, g=4222, t=3878\n", + "NW_025791799.1: T=11582, C=19074, A=11691, G=18551, g=6919, t=6743, c=7209, a=5946\n", + "NW_021160015.1: t=10518, g=5674, c=5571, a=9105, G=16201, A=17519, T=17939, C=15236\n", + "NW_019805500.1: T=87804, G=74248, A=90019, C=77052, t=45241, g=31506, a=41803, c=32742\n", + "NW_018654723.1: A=11939, C=13989, T=10292, G=13555, a=8379, c=6920, t=6831, g=6704\n", + "NW_013171813.1: T=48425, A=53185, C=39699, G=37661, a=30714, t=24295, c=16740, g=16744\n", + "NW_021160019.1: T=45917, A=48467, C=36531, G=38165, t=28256, g=22589, c=21767, a=29275\n", + "NW_017852933.1: T=299862, G=237724, C=239986, A=300651, a=235182, c=189257, t=236833, g=187620\n", + "NW_021160020.1: T=17892, C=22495, A=18247, G=22184, g=14206, t=13855, c=14251, a=14778\n", + "NW_012132921.1: C=19662, A=32053, G=20745, T=33460, a=19883, g=10852, t=21910, c=10571\n", + "NW_017363817.1: A=47662, C=40849, T=41917, G=39735, a=30441, g=26684, t=29717, c=24914\n", + "NW_025791800.1: A=50714, T=48536, C=43195, G=41650, t=39813, a=42384, g=33883, c=34822\n", + "NW_016107299.1: A=22008, T=22704, C=28033, G=26662, c=13765, a=13752, g=13657, t=14142\n", + "NW_017363819.1: C=47756, T=42968, G=47541, A=42552, t=24510, g=23186, c=22735, a=25044\n", + "NW_025791801.1: T=67762, C=54559, A=69987, G=54723, a=41123, c=22808, g=24159, t=37718\n", + "NW_025791803.1: A=85098, T=95479, C=63620, t=71093, g=47464, c=47464, a=61667, G=66656\n", + "NW_019805501.1: A=22138, G=16317, T=19282, C=17699, a=12966, g=9362, c=8775, t=10214\n", + "NW_025791806.1: t=17008, a=15177, g=13468, c=13541, A=26823, G=29589, T=27714, C=29289\n", + "NW_017363818.1: A=49361, G=31158, C=31002, T=50504, a=27946, t=27648, g=14709, c=14567\n", + "NW_025791802.1: A=35869, T=34937, C=42682, G=40240, g=18838, c=19838, a=21435, t=21039\n", + "NW_021160021.1: c=6056, t=3984, a=5131, g=4968, A=7296, C=11621, G=10960, T=6679\n", + "NW_025791804.1: C=28044, G=31177, T=26860, A=23849, c=7391, t=10616, g=7610, a=9142\n", + "NW_019805503.1: A=30222, C=18180, T=29387, G=17586, t=20601, a=24144, c=11670, g=11396\n", + "NW_025791805.1: A=26478, T=27490, C=43532, G=44526, a=10736, c=11797, g=12267, t=10800\n", + "NW_018654724.1: A=16097, T=17822, G=13153, a=9301, t=11340, c=6396, C=12102, g=6859\n", + "NW_014040928.1: C=29037, T=39404, A=40054, G=28916, c=12234, t=20415, g=12074, a=22967\n", + "NW_019805502.1: T=48723, C=39106, G=39259, A=50343, t=17700, c=10131, a=15426, g=10155\n", + "NW_013171814.1: T=78967, C=81651, G=83630, A=75434, t=24995, g=19095, c=19187, a=24428\n", + "NW_025791810.1: C=13737, A=10328, T=9691, G=14013, g=10040, a=10412, c=11038, t=9952\n", + "NW_025791809.1: t=26482, c=21013, g=20568, a=22388, C=29064, A=32538, G=36043, T=38070\n", + "NW_025791807.1: T=49890, C=41616, A=49850, G=48635, g=32860, c=32757, a=39798, t=38348\n", + "NW_021160022.1: G=73065, C=71366, T=53323, A=55371, a=60595, c=59505, t=60210, g=59730\n", + "NW_025791808.1: a=16459, c=14561, g=14025, t=16369, G=18844, A=18530, T=18439, C=20591\n", + "NW_016107300.1: G=27673, A=29431, T=27726, C=26009, c=10574, g=11796, a=15932, t=14785\n", + "NW_009646206.1: C=50935, G=49358, A=58508, T=55829, t=44201, a=46043, c=32908, g=33135\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "NW_014040929.1: t=48834, g=46681, a=49464, c=47928, G=57858, C=56807, T=49180, A=48637\n", + "NW_016107301.1: G=28399, A=30259, T=28482, C=26750, c=11186, g=12416, a=16683, t=16029, N=2\n", + "NW_016107302.1: G=28104, A=29842, T=28042, C=26361, c=11099, g=12357, a=16480, t=15846\n", + "NW_016107304.1: G=37159, A=39322, T=37541, C=34984, c=18745, g=21182, a=26334, t=25791\n", + "NW_016107303.1: G=50813, A=53450, T=50840, C=47675, c=18209, g=20187, a=26716, t=25532, N=100\n", + "NW_016107308.1: G=16218, A=17370, T=16186, C=15424, c=6950, g=7504, a=10591, t=9602\n", + "NW_016107305.1: G=27041, A=28586, T=26859, C=25280, c=10186, g=11464, a=15524, t=14344, N=1\n", + "NW_016107307.1: G=27748, A=29527, T=27780, C=26084, c=11025, g=12336, a=16453, t=15760\n", + "NW_016107306.1: G=29064, A=31254, T=29608, C=27539, c=12199, g=13263, a=18054, t=17216\n", + "NW_016107311.1: G=15642, A=16862, T=15715, C=14973, c=7509, g=7924, a=11086, t=10842\n", + "NW_016107309.1: G=27221, A=28863, T=27185, C=25537, c=10369, g=11660, a=15677, t=14583\n", + "NW_016107313.1: G=28497, A=30342, T=28580, C=26776, c=11384, g=12602, a=16879, t=16203\n", + "NW_016107310.1: G=38320, A=40423, T=38274, C=36003, c=14294, g=15485, a=20481, t=19838\n", + "NW_016107314.1: G=24556, A=25930, T=24479, C=22936, c=9443, g=10651, a=14430, t=13260, N=2, R=2, Y=1, W=1\n", + "NW_016107312.1: G=21523, A=23135, T=24384, C=23204, c=15540, a=17992, t=17683, g=13488, N=16\n", + "NW_025791811.1: A=47443, G=33908, T=49326, C=31350, g=22489, t=34861, a=32176, c=22172\n", + "NW_025791812.1: A=50071, T=57895, C=53530, G=53002, g=32439, a=34278, t=41018, c=33498\n", + "NW_025791815.1: G=47772, A=31530, T=32258, C=46168, g=7649, a=8592, t=8276, c=7462\n", + "NW_021160023.1: T=78487, G=69435, A=77222, C=69870, t=70453, g=44019, a=62662, c=47337\n", + "NW_025791813.1: t=38534, c=25732, g=25280, a=37666, T=64178, G=41850, A=62330, C=41182\n", + "NW_025791814.1: A=206095, T=201452, G=152850, C=154495, t=90468, c=57326, a=100076, g=58016\n", + "NW_009646207.1: a=17107, t=15496, c=13351, g=13334, T=25099, C=23551, A=25995, G=22629\n", + "NW_014040930.1: t=14929, a=16669, c=12900, g=12771, A=26074, C=24358, T=25053, G=23176\n", + "NW_021160026.1: T=65049, A=66268, C=51668, G=50980, a=55964, t=53450, c=33718, g=35271\n", + "NW_021160024.1: t=97363, g=56477, c=56984, a=100188, A=46669, C=29816, T=43819, G=29987\n", + "NW_021160025.1: c=1054, t=2273, g=1914, a=1247, C=1399, T=1428, G=1723, A=1257\n", + "NW_015148968.1: C=25503, A=24879, T=23644, G=23783, g=10610, c=11109, t=11926, a=13708\n", + "NW_009646208.1: C=26490, T=24911, G=24942, A=26029, t=12822, c=11775, a=14652, g=11406\n", + "NW_014040931.1: T=29182, A=29713, C=31037, G=29438, a=15734, g=12520, c=12989, t=14136\n", + "NW_021160031.1: T=1711, A=1899, C=1102, c=835, t=5084, a=4728, g=945, G=1131\n", + "NW_015148969.2: g=6297, a=6132, t=8672, c=5964, G=21658, T=17432, A=14902, C=19983\n", + "NW_017363820.1: a=23344, g=12280, c=12774, t=22633, C=21711, T=36585, A=36704, G=21973\n", + "NW_025791820.1: c=36989, a=42536, t=38211, g=37867, C=45384, T=41313, A=43843, G=44350\n", + "NW_021160028.1: A=2583, T=3194, C=1807, t=7291, a=6499, g=2958, c=2536, G=1956\n", + "NW_025791816.1: T=11794, G=8883, C=8977, a=8849, t=8568, c=4912, g=4975, A=11852\n", + "NW_021160029.1: a=11467, t=10251, g=4451, c=4243, A=12273, G=7048, T=11583, C=6876\n", + "NW_025791817.1: T=22365, C=18441, A=23151, G=18095, t=15146, c=13604, a=16247, g=13518\n", + "NW_021160030.1: t=4032, g=993, c=917, a=4240, T=1564, A=1390, G=770, C=772\n", + "NW_025791819.1: C=31577, T=51020, A=51719, G=31475, c=21805, a=41321, t=42051, g=23151\n", + "NW_021160027.1: g=33813, a=50060, t=57239, c=34223, C=46856, T=68110, A=63811, G=49016\n", + "NW_025791818.1: C=96931, T=109814, A=114935, t=59562, c=38699, a=65652, g=38077, G=96046\n", + "NW_018654725.1: t=5016, c=2813, a=4690, g=2832, G=7129, T=10652, C=6108, A=9130\n", + "NW_009646209.1: C=10008, A=15309, G=9285, T=14843, t=15595, g=8236, c=12058, a=15816\n", + "NW_018654726.1: G=30259, A=43619, T=42665, C=30918, t=19520, a=20221, c=11227, g=11293\n", + "NW_025791821.1: G=152302, A=174305, T=181962, C=155335, a=64645, c=37704, t=62516, g=36974\n", + "NT_187514.1: C=19919, A=19732, G=20105, T=18318, c=6346, t=8009, g=6614, a=10485\n", + "NT_187520.1: C=23276, T=32840, G=23379, A=32577, g=13066, a=22276, t=24079, c=13792\n", + "NT_187517.1: G=35716, A=40962, T=40908, C=36076, g=23297, c=22516, t=27786, a=29010\n", + "NT_187515.1: G=63743, T=39325, A=42141, C=65619, t=14366, c=31284, a=24310, g=23656, N=50000\n", + "NT_187521.1: c=4145, a=6101, g=3531, t=5254, T=8410, A=8538, C=7262, G=7017\n", + "NW_003315906.1: C=19095, A=17509, T=16908, G=19586, t=9597, g=8926, a=9471, c=9176\n", + "NW_003315905.1: C=21889, T=24538, A=23831, G=21607, c=21283, t=24459, g=21072, a=23760\n", + "NW_003315907.2: C=44750, A=73398, T=77340, G=45838, t=46574, g=20189, a=38010, c=20481\n", + "NT_187525.1: g=6686, t=10488, c=7027, a=12527, T=25101, G=24334, C=23765, A=26312\n", + "NT_187518.1: C=22930, A=33550, T=34363, G=23723, g=8332, a=16924, t=17996, c=8016\n", + "NT_187516.1: g=27648, a=36443, c=28329, t=39595, A=76697, T=81641, G=68681, C=66567\n", + "NT_187519.1: c=61304, a=107510, g=60178, t=98607, G=113115, A=179460, C=118207, T=173277\n", + "NT_187526.1: A=13767, T=14324, C=11844, G=12682, t=6203, g=3342, a=4841, c=3884\n", + "NT_187522.1: G=22041, C=23714, A=22599, T=23885, a=8165, g=5791, c=6183, t=8238\n", + "NW_003315908.1: A=26686, G=19100, T=28121, C=17977, c=9296, t=16625, a=16162, g=9423\n", + "NT_187529.1: G=38192, A=40466, T=41923, C=41597, g=11073, a=16266, t=20417, c=13691\n", + "NT_187530.1: G=13742, A=22167, T=22603, C=13921, t=13054, c=6387, a=12219, g=6302\n", + "NT_187524.1: G=11126, A=14589, T=15453, C=11800, g=15936, t=25577, c=16363, a=22197\n", + "NT_187528.1: G=16711, A=19900, T=21650, C=16201, a=10611, c=6307, g=6193, t=12526\n", + "NT_187531.1: T=24414, G=15140, A=22773, C=14393, a=17024, g=11009, t=22378, c=10888\n", + "NW_003571033.2: a=6849, t=8961, c=4972, g=5157, C=14458, A=18625, T=20289, G=16820\n", + "NW_003315909.1: a=15135, t=12576, g=8183, c=8880, C=16099, T=23475, G=15554, A=23919\n", + "NT_187523.1: G=30475, A=28839, T=31160, C=28236, a=12232, g=9851, c=8881, t=11904\n", + "NT_187527.1: G=38137, A=26878, T=28526, C=35730, g=10297, c=11126, t=12234, a=11238\n", + "NT_187535.1: A=19020, C=12617, T=20847, G=13717, t=15476, g=7906, a=11815, c=7789\n", + "NW_003871060.2: G=22981, A=28436, T=28411, C=23512, c=14432, a=21666, g=14469, t=19244\n", + "NW_003315913.1: T=31864, C=18612, A=30275, G=19656, t=26630, g=14576, a=24424, c=14634\n", + "NT_187537.1: c=20724, a=26195, g=19629, t=25798, A=35204, G=30721, T=35102, C=30735\n", + "NT_187538.1: G=15246, A=18494, T=17524, C=15536, g=10450, a=14177, t=11834, c=9773\n", + "NT_187533.1: G=21593, A=35150, T=32830, C=23774, g=10690, t=18637, a=20013, c=10962\n", + "NT_187532.1: C=34838, A=31422, T=33465, G=38016, g=16446, c=16027, a=17415, t=17683\n", + "NT_187536.1: t=36554, a=38892, g=19561, c=18443, T=42919, A=43425, C=24108, G=24350\n", + "NT_187534.1: G=29510, A=28996, T=28744, C=29206, a=11674, t=13298, g=10559, c=10442\n", + "NT_187539.1: G=25373, A=32171, T=29995, C=25518, c=14706, t=20079, g=14321, a=22241\n", + "NT_187540.1: G=28694, A=48021, T=46940, C=30040, g=11129, c=11462, t=21385, a=22575\n", + "NW_003315915.1: G=41197, A=74311, T=72289, C=41726, t=49048, g=22337, c=23592, a=51687\n", + "NT_187541.1: c=9714, a=19459, g=9672, t=13932, C=11951, A=18473, T=16813, G=11929\n", + "NT_187544.1: C=17874, T=30653, A=30741, c=10243, a=19595, t=20668, g=10217, G=18974\n", + "NW_003315914.1: G=20200, A=31950, T=32719, C=20085, t=19191, g=10351, a=19521, c=10519\n", + "NT_167250.2: G=64932, T=107659, C=65266, A=106431, g=41566, t=81555, a=77515, c=41552\n", + "NT_187542.1: T=22724, C=14581, A=21919, G=15743, t=13487, a=13737, c=8456, g=9265\n", + "NT_187550.1: G=27720, A=21267, T=21364, C=28348, t=7293, c=6858, a=6833, g=6453\n", + "NT_187545.1: G=28415, A=38383, T=39006, C=25156, t=23789, g=15112, a=21927, c=14156\n", + "NT_187543.1: G=36233, A=51194, T=46977, C=39816, g=12497, a=23614, c=13782, t=19983\n", + "NW_003315920.1: G=9268, A=16743, T=16780, C=9576, g=4773, c=4813, a=10269, t=10506\n", + "NT_187548.1: A=30903, C=43758, T=27872, G=44082, a=7822, c=8527, t=7750, g=8329\n", + "NT_187547.1: G=45409, A=33534, T=36307, C=44852, c=7973, t=9910, a=9050, g=8675\n", + "NW_003571036.1: A=43801, G=25225, C=25446, T=45306, t=30435, g=14014, c=14303, a=28322\n", + "NW_003315918.1: A=15278, G=10286, C=9594, T=16778, g=9046, t=16626, c=8800, a=14833\n", + "NT_187551.1: C=22864, A=31758, G=22688, T=29210, t=17096, c=10863, a=19275, g=10804\n", + "NT_187549.1: A=33486, T=34045, C=21249, G=22170, a=18373, g=10724, t=21967, c=10694\n", + "NW_003315917.2: A=243776, C=155219, T=244010, G=156808, g=143765, t=215539, a=210131, c=143680, N=100000\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "NT_187546.1: T=22666, C=19057, c=9995, t=15578, a=12783, g=10913, A=19850, G=21050\n", + "NW_003315919.1: G=20467, A=32573, T=32717, C=19725, t=20991, c=11724, a=23675, g=11587\n", + "NT_187555.1: G=20293, A=35474, C=20118, T=35428, c=10174, a=22627, t=21942, g=9752\n", + "NT_167244.2: T=403803, G=341689, C=342108, A=412965, c=178306, a=261978, t=250320, g=179662, N=2301543\n", + "NT_187557.1: G=12814, A=14530, T=14502, C=12985, c=4115, a=5858, t=5869, g=4332\n", + "NW_003315921.1: G=15960, A=23919, T=23516, C=15973, a=14860, g=8044, t=14384, c=8080\n", + "NT_187554.1: A=25863, C=15185, T=25609, G=15129, t=22961, a=23999, c=11651, g=11751\n", + "NT_187556.1: T=183137, A=194998, C=116551, a=96045, g=43173, t=86325, c=43272, G=106979\n", + "NW_004166862.2: A=35924, C=32742, G=44072, T=38242, a=10454, g=6625, t=11430, c=6334\n", + "NT_187558.1: C=36642, A=29786, T=28548, G=35237, g=5966, t=7551, a=8203, c=6019\n", + "NT_187552.1: T=36846, C=35063, G=34874, A=34308, g=11974, c=10806, t=19416, a=14249\n", + "NT_187553.1: G=51663, C=51512, T=52150, A=53663, t=18137, g=12683, c=12175, a=19799\n", + "NW_003315922.2: C=19090, A=25749, T=25765, G=19300, g=5249, t=9277, a=9151, c=5602\n", + "NT_187559.1: A=27244, T=29520, C=18287, G=19873, t=22128, g=12119, a=17462, c=11533\n", + "NT_187561.1: g=17608, a=25804, t=25397, c=17416, C=26406, T=35092, G=26080, A=35783\n", + "NT_187562.1: G=179266, A=227106, T=227252, C=181027, g=54263, a=95305, c=54350, t=93001\n", + "NT_187563.1: G=28329, A=22827, T=23160, C=30110, t=5882, g=4686, c=5464, a=5976\n", + "NT_187572.1: C=26133, A=24585, T=28923, G=27066, c=7870, t=13145, g=7928, a=9956\n", + "NT_187560.1: C=40960, T=41327, A=34730, G=47399, t=13350, g=11847, c=8899, a=11476\n", + "NT_187564.1: G=37843, A=49082, T=47818, C=38010, a=29345, g=21505, c=20749, t=27103\n", + "NT_187568.1: C=53466, A=51093, G=59110, T=60394, c=13119, a=14448, t=19329, g=11777\n", + "NT_187565.1: C=57798, G=60824, T=57731, A=56268, t=17621, a=16987, g=13646, c=11561\n", + "NT_187570.1: a=24020, g=14877, c=16557, t=23981, G=50092, A=59039, T=60979, C=50685\n", + "NT_187576.1: T=193518, C=159887, A=188011, G=169043, t=87406, c=52794, g=53228, a=81619\n", + "NT_187566.1: A=28530, G=26237, C=22444, T=27924, g=6887, c=6016, a=11025, t=12749\n", + "NT_187574.1: A=22005, T=23373, G=36693, C=32870, t=4446, g=4932, a=4627, c=4589\n", + "NT_187567.1: A=70068, T=70069, G=45168, g=26436, c=26794, a=46708, t=44551, C=44621\n", + "NT_187577.1: a=90138, g=51960, t=104752, c=50696, C=60044, T=105684, A=98864, G=62354\n", + "NT_187575.1: C=8567, G=9929, A=6857, T=7528, t=1062, c=877, g=944, a=876\n", + "NT_187569.1: C=20701, T=17692, G=18535, A=19184, g=12976, t=14505, a=15726, c=12925\n", + "NT_187573.1: C=31056, G=29781, T=24939, A=26463, a=12882, g=10948, c=11098, t=11816\n", + "NT_187571.1: C=69070, A=46445, G=67786, T=45437, g=18617, c=19013, t=20645, a=18828\n", + "NW_003315929.1: A=13297, C=11825, T=12687, G=11905, t=7708, g=4581, a=5184, c=4364\n", + "NW_003315931.1: T=9711, A=10373, C=7669, G=7639, g=5416, t=6624, a=7686, c=4914\n", + "NW_003315928.1: T=35875, C=23566, G=24965, A=33784, c=7917, a=13821, t=14888, g=8172\n", + "NW_003315930.1: A=32601, C=24068, T=33505, G=24592, t=18908, c=10617, g=10843, a=16152\n", + "NW_003315934.1: C=23468, T=34762, A=34310, G=23662, t=19495, g=11808, a=19530, c=12219\n", + "NT_187579.1: a=29234, t=34214, g=18447, c=19601, T=22550, C=16994, A=23100, G=17356\n", + "NW_003315935.1: G=38120, A=48976, T=45600, C=38909, a=45640, c=27800, t=37426, g=27331\n", + "NT_187578.1: c=23989, t=44716, a=46225, g=25051, G=60486, T=89794, C=58733, A=90088\n", + "NT_187584.1: A=27881, T=27815, C=36248, G=36020, c=12143, g=11023, a=12904, t=13058\n", + "NT_187586.1: C=42074, T=28140, G=44578, A=27924, g=17438, t=16153, c=17273, a=16553\n", + "NT_187583.1: G=23124, A=34963, T=32539, C=23313, g=16911, t=26376, a=30743, c=16090\n", + "NT_187585.1: G=64705, A=54686, T=49976, C=67675, t=15508, g=13978, c=13934, a=16402, N=31\n", + "NT_187582.1: T=12641, A=11159, C=12465, G=13300, t=5638, c=4103, g=4003, a=4398\n", + "NW_003315936.1: G=16393, A=28954, t=22694, c=9780, a=20052, g=10046, C=16494, T=29994\n", + "NW_003871074.1: C=23351, T=34575, A=37340, G=22587, a=23835, g=12682, t=24333, c=12706\n", + "NW_003871073.1: G=21913, A=37948, T=37642, C=22483, t=26082, g=13344, a=28477, c=13109\n", + "NT_187588.1: c=2218, t=3311, g=2206, a=4096, A=8716, C=5882, T=7867, G=5794\n", + "NW_003571049.1: c=8274, t=9812, a=10784, A=31002, C=33962, T=30863, g=7937, G=34679\n", + "NT_187581.1: a=13091, g=8000, t=13476, T=38983, A=37569, G=34242, C=33080, c=7728\n", + "NW_003571050.1: A=83190, C=52135, T=81322, G=48869, c=24081, t=45397, g=23172, a=50105\n", + "NW_003315938.1: A=23287, T=22711, C=15437, G=15071, t=13221, a=14934, c=8144, g=7999\n", + "NW_003315941.1: c=7857, a=14734, t=16838, g=7993, C=17072, A=27705, T=28744, G=17712\n", + "NW_003315939.2: A=25741, T=24350, C=18434, G=16796, g=15557, c=16138, t=25019, a=27143\n", + "NT_187587.1: T=41791, C=32498, G=30469, A=44564, t=24611, g=17788, c=18396, a=28022\n", + "NT_187589.1: C=13259, T=18003, A=15426, G=14066, a=4244, t=5474, g=2666, c=2923\n", + "NT_187590.1: C=20611, T=23560, G=21939, A=20206, g=6810, t=10306, a=8548, c=7518\n", + "NW_003315942.2: G=19577, A=27115, T=29134, C=19035, a=16409, c=10625, t=20021, g=10958\n", + "NW_003315940.1: T=34530, G=24922, A=32907, C=23843, a=19049, t=23142, g=13259, c=12667\n", + "NT_187591.1: C=11155, A=10143, T=9719, G=12129, c=3164, a=2762, t=4324, g=2738\n", + "NT_187597.1: T=21391, G=12142, A=22019, C=11950, c=5873, a=12767, t=11966, g=5724\n", + "NT_187593.1: G=25905, A=39968, T=36001, C=28558, g=9281, c=9503, t=14869, a=16221\n", + "NT_187594.1: G=23926, T=34619, A=35742, C=29279, g=12520, c=14841, a=21108, t=19649\n", + "NT_187596.1: T=7171, A=6343, C=8990, G=9263, g=1397, c=1152, a=1121, t=1850\n", + "NT_187595.1: A=34192, T=34712, G=19650, C=19773, c=9651, t=21100, g=9709, a=20347\n", + "NT_187592.1: G=50546, T=52902, A=55129, C=52411, g=20331, c=19079, t=27987, a=28528\n", + "NT_187598.1: A=54378, C=35409, T=51874, G=33869, t=42505, a=47449, g=28447, c=28235\n", + "NT_187599.1: A=33796, T=30313, G=37610, C=39720, a=12294, c=8494, t=10046, g=8430\n", + "NT_187602.1: G=62368, A=90201, T=89797, C=63904, t=58819, g=29947, a=54362, c=29601\n", + "NT_187600.1: T=261337, A=251738, C=237906, G=239715, a=106230, c=69694, g=68596, t=116177\n", + "NT_187601.1: C=242426, A=272582, G=244803, T=274339, g=100337, c=96878, a=137584, t=142162\n", + "NT_187605.1: G=28574, A=37798, T=37049, C=28874, t=33315, a=33654, g=22436, c=23217\n", + "NT_187604.1: G=38229, A=42928, T=45794, C=37926, t=30167, c=20016, a=27475, g=20519\n", + "NW_003315943.1: T=49528, G=38978, A=49260, C=39207, c=25152, g=25132, t=35024, a=34246\n", + "NT_187603.1: G=42934, A=51755, T=49705, C=42935, g=31248, t=38835, a=39172, c=30798\n", + "NT_187609.1: g=7429, t=6787, a=7824, c=7381, A=7520, C=10215, T=7143, G=9683\n", + "NT_187610.1: C=22443, G=22699, A=15476, T=18064, c=13931, g=14054, a=13020, t=14506\n", + "NW_003315944.2: A=76290, G=73200, C=76131, T=72060, t=23185, c=20051, g=20733, a=27123\n", + "NT_187606.1: G=72762, A=80692, T=79940, C=72907, c=25942, a=36764, g=25565, t=36308\n", + "NW_003315946.1: G=8091, A=13174, T=11642, C=9187, a=13991, g=11301, t=11552, c=10734\n", + "NW_003315945.1: G=32958, A=40042, T=38103, C=34688, a=15921, g=8959, c=8879, t=12912\n", + "NT_187608.1: C=40463, A=31992, G=41143, T=31879, t=22182, a=21275, g=21977, c=21946\n", + "NT_187607.1: C=342152, A=393569, G=349926, T=405423, c=265521, g=264469, t=329793, a=308847\n", + "NT_187611.1: c=20899, a=20709, t=19119, g=21964, G=31360, C=32416, T=24480, A=25741\n", + "NW_003315952.3: G=69361, A=64716, T=61194, C=78200, t=25205, c=23443, g=24375, a=29197\n", + "NT_187613.1: a=40401, g=39195, t=36889, c=39608, T=52339, C=64737, G=59845, A=58343\n", + "NT_187614.1: A=467130, G=423937, T=471752, C=417731, a=304656, g=245066, c=243803, t=302999\n", + "NW_003871092.1: C=9311, A=12851, G=9926, T=13678, c=4967, a=6286, g=4476, t=8850\n", + "NW_003315953.2: G=24228, A=26050, T=27637, C=24016, t=9771, a=9065, g=6043, c=6341\n", + "NW_003871091.1: A=53368, T=56699, C=38330, G=41276, c=16089, t=29021, a=26990, g=16358\n", + "NT_167251.2: T=294441, C=245460, A=291790, G=252014, t=194109, c=151693, g=152381, a=190104, N=50000\n", + "NW_003315955.1: C=14109, T=12473, A=11192, G=14280, c=9165, t=10095, a=9434, g=9471\n", + "NT_187616.1: A=20756, G=15442, T=18153, C=16843, a=11777, g=8498, c=7976, t=9318\n", + "NW_003315954.1: C=27753, A=44837, T=45686, G=27803, t=23940, a=26371, g=13836, c=13769\n", + "NT_187615.1: t=24167, a=28596, g=13416, c=13974, T=46174, C=31236, A=48845, G=29419\n", + "NT_187618.1: G=11647, A=20356, T=21701, C=12330, c=7319, t=17097, a=14080, g=7207\n", + "NT_187612.1: G=38743, A=28643, T=30354, C=39799, t=13361, c=9054, a=9808, g=9159\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "NW_003315959.1: G=21363, A=31831, T=30515, c=11012, t=17952, a=20056, g=10864, C=21196\n", + "NW_003315956.1: T=53352, G=39670, A=50773, C=39147, t=35291, g=20940, a=29541, c=21117\n", + "NW_003315957.1: g=8321, a=15107, t=13558, c=8423, T=18158, C=11503, A=18239, G=11243\n", + "NW_003315958.1: A=36269, G=33776, T=33606, C=34576, c=6171, a=10391, t=7364, g=5797\n", + "NW_003315961.1: T=30504, G=28217, C=29775, A=29982, c=8822, a=11555, g=8489, t=12203\n", + "NW_003315960.1: A=31174, C=18536, T=29920, G=19049, g=8234, t=16876, a=16556, c=7933, N=50000\n", + "NT_187622.1: A=6653, C=11534, T=6358, G=11895, c=6620, t=5290, a=6365, g=7019\n", + "NT_187621.1: C=13587, A=7489, G=12088, T=6392, g=3927, c=3662, a=3124, t=2700\n", + "NT_187617.1: c=6800, a=9788, g=7330, t=9658, A=31395, T=31436, G=36026, C=35566\n", + "NW_003315962.1: G=35923, T=55588, A=53885, C=40403, g=38307, t=58851, c=41535, a=61165\n", + "NT_187619.1: t=3687, c=3567, g=3781, a=3823, C=6609, A=6238, G=8398, T=7053\n", + "NW_003315964.2: c=16073, a=24396, g=15884, t=22757, C=18227, A=27518, T=26945, G=18422\n", + "NW_003315963.1: C=16065, A=21580, G=17099, T=23677, t=21973, g=17655, a=20320, c=17495\n", + "NW_003315965.1: G=18941, A=26897, T=27976, C=18799, a=28598, c=17996, t=30292, g=18525\n", + "NW_003315966.2: G=21642, A=22667, C=21774, T=20974, g=8962, t=10454, c=9092, a=12821\n", + "NT_187623.1: T=19430, G=25887, A=22345, C=27732, c=5225, a=6779, t=5757, g=5619\n", + "NT_187620.1: G=33549, a=25908, t=28732, c=17742, g=18602, T=38575, A=37634, C=33020\n", + "NW_003571054.1: T=124070, G=130339, C=129269, A=124563, a=98707, c=87087, g=88782, t=99899, N=105000\n", + "NT_187625.1: C=16225, T=8014, A=10372, t=1744, a=2423, g=2860, G=14477, c=2546\n", + "NW_003315967.2: g=4184, a=7696, t=9008, c=4080, G=7481, T=12404, A=11695, C=7369\n", + "NT_187628.1: g=16107, a=34109, t=22100, c=16856, T=22200, A=25117, G=14504, C=15750\n", + "NT_187624.1: G=42623, A=31864, T=36651, C=40374, c=7711, a=7438, g=7092, t=9680\n", + "NW_003315969.2: T=12524, G=8972, A=11840, C=8910, t=10279, a=8916, c=6669, g=6543\n", + "NW_003315970.2: C=11591, A=16228, T=14980, G=11883, a=18090, t=15435, g=14486, c=13996\n", + "NT_187627.1: G=16479, A=23232, T=23429, C=16164, t=19580, c=13300, a=18496, g=13220\n", + "NW_003315968.2: A=38033, C=21677, T=38561, G=22240, t=28483, g=13626, c=12630, a=25947\n", + "NT_187626.1: G=16990, C=17348, T=11722, A=13620, c=5339, t=5299, a=7236, g=5138\n", + "NT_187632.1: A=31369, T=31120, G=33542, C=35046, c=12379, t=15329, g=12114, a=15363\n", + "NT_187629.1: C=37676, A=45374, T=43610, G=37597, t=28233, a=27490, c=19937, g=19997\n", + "NT_187633.1: A=45615, G=52251, C=51245, T=46890, c=26116, g=26350, a=27425, t=28243\n", + "NT_187631.1: A=18037, G=19696, C=19349, T=18978, a=6429, t=7144, g=6116, c=5582\n", + "NW_003315972.2: A=14126, G=13144, a=11086, g=8945, c=9438, t=12276, T=14748, C=13161\n", + "NW_003315971.2: T=26405, G=24016, C=24879, A=27008, t=15794, c=13707, a=17317, g=13685\n", + "NT_187630.1: c=17966, g=18237, a=29804, t=24699, T=48400, C=36381, G=34488, A=53691\n", + "NT_187635.1: g=13622, a=25838, t=24171, c=14036, G=13156, T=19937, C=13291, A=20155\n", + "NT_187646.1: C=22610, A=32873, T=34161, G=23027, g=7924, a=16388, t=17335, c=7894\n", + "NT_187648.1: A=29094, G=23119, C=23035, T=28690, a=35481, c=22318, t=30446, g=21975\n", + "NT_187634.1: G=38596, A=33518, T=32475, C=37197, c=34312, t=39473, a=35079, g=34219\n", + "NT_187647.1: G=30714, A=28967, T=31279, C=28342, a=11974, g=9505, c=8627, t=11810\n", + "NT_187649.1: G=26470, A=26634, T=24985, C=29964, g=12906, t=14361, a=14540, c=13036\n", + "NT_187650.1: G=53113, A=71660, T=67883, C=57061, g=22573, a=42701, c=25440, t=38116\n", + "NT_187651.1: T=181591, C=114018, A=179444, G=116689, t=154559, g=100296, a=148805, c=99016, N=50000\n", + "NT_187652.1: T=22300, C=19196, c=9839, t=15262, a=12546, g=10601, A=19713, G=21500\n", + "NT_187655.1: C=23644, A=23604, G=25507, T=27001, c=6818, t=12923, a=10176, g=7286\n", + "NT_187653.1: c=8080, t=10391, a=11859, A=36310, T=34711, C=41227, G=40052, g=8239\n", + "NT_113891.3: A=812637, T=798595, G=695321, C=695596, t=512957, g=377411, a=528568, c=374180\n", + "NT_187656.1: g=6488, a=5715, t=6581, c=5589, A=15328, T=19460, C=20794, G=26756\n", + "NT_187657.1: A=34427, T=33583, C=41210, G=41472, c=15303, g=14267, a=17864, t=16499\n", + "NT_187654.1: G=57594, C=58125, T=58116, A=57512, c=18535, g=19142, t=26143, a=23520\n", + "NT_187658.1: A=110078, C=70109, T=108644, G=67646, c=37930, t=64487, g=36888, a=76567\n", + "NT_187662.1: T=23853, G=29270, C=25470, A=21350, a=9263, g=9275, t=10369, c=8871\n", + "NT_187664.1: a=11610, g=11969, t=10942, c=12240, T=23328, C=31831, G=29929, A=25250\n", + "NT_187659.1: G=25901, C=24491, A=30926, T=32305, g=18353, t=24384, c=18225, a=21799\n", + "NT_187660.1: T=836917, G=685519, A=848267, C=688847, g=339196, t=505461, a=513478, c=339722, N=404007\n", + "NW_003871093.1: C=10547, A=14861, G=11351, T=15515, c=7020, a=9275, g=6785, t=12716\n", + "NT_187665.1: A=36350, G=34359, T=32728, C=36704, c=7604, a=11451, t=8127, g=6738\n", + "NT_187661.1: T=57904, A=56490, C=52628, G=52601, c=21765, t=29558, g=22894, a=31960\n", + "NT_187663.1: T=239848, C=218065, A=240726, G=215557, t=140119, c=113127, g=112539, a=143209\n", + "NW_004504305.1: T=12165, G=12624, C=12617, A=10722, t=7263, c=6098, a=6449, g=6075\n", + "NT_187666.1: T=30067, G=27959, C=29205, A=29506, c=8820, a=11539, g=8444, t=12170\n", + "NT_187667.1: A=32770, G=37179, T=31479, t=37880, c=33086, g=32004, a=33552, C=36059\n", + "NW_003571055.2: T=86950, G=90505, C=89083, A=87655, a=79955, c=73136, g=75496, t=80740, N=66000\n", + "NT_187678.1: G=27755, A=27417, T=25597, C=31036, g=12759, t=14292, a=14566, c=13118\n", + "NT_187680.1: T=38914, A=38506, G=36865, C=37102, t=21635, c=16423, a=23512, g=16325\n", + "NT_187679.1: G=82852, A=115743, T=110010, t=46816, c=28605, a=50532, C=91878, g=29363\n", + "NT_167245.2: T=695345, G=613355, C=614136, A=709917, c=328172, a=461002, t=446156, g=330634, N=406094\n", + "NT_187682.1: T=28665, G=26891, C=27993, A=29118, t=16622, c=14456, a=18017, g=14341\n", + "NT_187688.1: G=26623, A=26770, T=25078, C=30137, g=12909, t=14363, a=14545, c=13033\n", + "NT_187681.1: g=12476, a=13006, t=13387, c=12358, A=33174, T=36471, C=44996, G=52744\n", + "NW_003571056.2: T=55608, G=60932, C=59204, A=56187, a=57041, c=54515, g=56109, t=57708, N=607000\n", + "NT_187689.1: C=34435, A=30496, T=32929, G=36595, g=15418, c=14400, a=16282, t=16796\n", + "NW_003571057.2: T=52158, G=57075, C=56065, A=52572, a=55572, c=52925, g=54136, t=55338, N=656000\n", + "NT_167246.2: T=681862, G=582235, C=579563, A=692111, c=322221, a=462317, t=450885, g=323927, N=582522\n", + "NT_167247.2: T=632115, G=565684, C=566890, A=645413, c=290449, a=403939, t=390662, g=294174, N=1038487\n", + "NT_187690.1: G=26845, A=26946, T=25212, C=30351, g=12892, t=14335, a=14559, c=13030\n", + "NW_003571059.2: T=57172, G=62193, C=60825, A=57898, a=58096, c=55222, g=56614, t=58663, N=536000\n", + "NW_003571058.2: T=48730, G=53072, C=52596, A=48715, a=54379, c=52547, g=53416, t=54935, N=648000\n", + "NT_167248.2: T=713687, G=629814, C=629663, A=723584, c=336138, a=464468, t=453569, g=338806, N=316659\n", + "NT_187692.1: g=4582, a=7562, t=7506, c=5302, C=10856, G=10753, A=15080, T=15111\n", + "NT_187691.1: G=27047, A=27263, T=25466, C=30818, g=12909, t=14397, a=14653, c=13054\n", + "NW_003571060.1: T=136857, G=141845, C=140508, A=137735, a=112165, c=97846, g=101064, t=114080, N=5000\n", + "NT_167249.2: T=703086, A=710501, C=598134, G=604030, t=453444, g=322911, c=320097, a=462050, N=755016\n", + "NT_187637.1: C=28391, A=28530, T=30298, G=26807, g=11187, a=16025, t=16703, c=12458\n", + "NT_187636.1: A=42335, C=42190, T=44740, G=39772, a=22530, t=23329, c=17650, g=16261\n", + "NW_003571061.2: T=92112, G=96550, C=95899, A=92175, a=78712, c=70607, g=71990, t=78434, N=120000\n", + "NT_187693.1: T=150608, G=156057, C=154389, A=151817, a=119935, c=104552, g=107559, t=121883\n", + "NT_187638.1: a=14996, t=15611, c=11545, g=10458, C=26013, A=26229, T=27709, G=24492\n", + "NT_187639.1: t=16786, c=12547, a=16166, g=11317, C=28475, A=28585, T=30362, G=26789\n", + "NT_187640.1: A=34845, C=34988, T=36862, G=32789, g=13086, t=19099, a=18132, c=14438\n", + "NT_187641.1: A=35061, C=34620, T=36859, G=32734, a=20159, c=15445, t=20408, g=14226\n", + "NT_187642.1: T=27584, C=25716, A=26056, G=24392, g=10342, t=15457, a=14784, c=11201\n", + "NT_187643.1: T=30343, C=28468, A=28566, G=26801, c=12456, t=16760, g=11218, a=16086\n", + "NT_187645.1: T=30303, C=28434, A=28519, G=26783, c=12497, t=16779, g=11238, a=16127\n", + "NT_187644.1: A=31260, T=32967, G=29341, C=31204, c=13042, t=17677, g=11972, a=17036\n", + "NT_187668.1: C=35186, T=36942, A=34910, G=32822, t=19264, a=18266, g=13129, c=14675\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "NT_187669.1: T=30313, C=28435, A=28540, G=26792, c=12478, t=16778, g=11221, a=16108\n", + "NT_187671.1: A=30413, C=26622, G=28627, T=29052, t=21288, g=18217, a=21190, c=15523\n", + "NT_187670.1: c=13091, a=17099, g=12013, t=17641, C=31104, A=31231, T=32975, G=29362\n", + "NT_187672.1: G=20824, A=22189, T=20965, C=19689, c=7678, g=8491, a=12269, t=11006\n", + "NT_187673.1: A=28589, T=30343, C=28438, G=26806, c=12494, t=16749, g=11211, a=16071\n", + "NT_187674.1: A=31511, C=27367, G=29173, T=29998, c=16254, t=22124, g=18709, a=22869\n", + "NT_187675.1: C=41801, A=47041, G=44496, T=44828, t=29136, c=21362, g=24022, a=29538\n", + "NT_187677.1: C=25755, A=29567, G=27558, T=28309, t=21821, g=18201, a=22421, c=15720\n", + "NT_187676.1: a=20646, g=17974, t=20946, c=15309, G=28321, T=28621, A=29784, C=26334\n", + "NT_187683.1: A=29538, C=26085, T=28354, G=27994, a=20496, g=17701, c=15232, t=20803\n", + "NT_187684.1: T=35971, C=34327, A=34104, G=31940, c=14392, t=18871, g=12867, a=18301\n", + "NT_187685.1: t=16722, c=12309, g=11263, a=16074, C=28284, A=28483, T=30250, G=26763\n", + "NT_187687.1: T=30337, C=28463, A=28573, G=26822, c=12403, t=16710, g=11190, a=16039\n", + "NT_113949.2: G=28410, A=30286, T=31982, C=30314, t=16854, c=12429, a=15759, g=11347\n", + "NT_187686.1: T=38639, G=34303, A=36502, C=36610, t=20319, c=15527, a=19781, g=14051\n", + "NC_012920.1: G=2169, A=5124, T=4094, C=5181, N=1\n", + "CPU times: user 19.7 s, sys: 8.34 s, total: 28 s\n", + "Wall time: 13min 12s\n" + ] + } + ], + "source": [ + "%%time\n", + "seq_counter = SeqCounter('../data/GRCh38_latest_genomic.fna', 4)\n", + "print(seq_counter)\n", + "seq_counter.output_results()" + ] + }, + { + "cell_type": "code", + "execution_count": 6, + "id": "b858ed01", + "metadata": { + "ExecuteTime": { + "end_time": "2022-04-27T19:50:01.624711Z", + "start_time": "2022-04-27T19:39:36.091117Z" + } + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Path to the file: ../data/GRCh38_latest_genomic.fna\n", + "Number of threads: 8\n", + "NT_187362.1: A=3698, G=2858, T=3012, C=2663, t=4874, c=4118, a=6741, g=4068\n", + "NT_187365.1: A=6892, C=4131, T=7573, G=4071, t=6280, g=3102, c=3019, a=5108\n", + "NT_187366.1: t=4163, g=2926, a=4770, c=3071, C=6163, T=7662, A=7516, G=5939\n", + "NT_187364.1: g=6917, a=13516, t=14842, c=8228, G=4664, A=6616, T=7146, C=4931\n", + "NT_187363.1: g=15374, a=21515, t=22087, c=14581, G=11355, C=11061, T=16322, A=15387\n", + "NT_187361.1: G=21162, A=27812, T=28097, C=22678, g=14746, t=22941, a=22589, c=15030\n", + "NT_187367.1: G=23619, A=25329, T=25118, C=22712, a=22014, g=16992, t=23518, c=16741\n", + "NC_000001.11: N=18475408, t=25922550, a=25810086, c=16788841, g=16855483, C=31266202, G=31256045, T=41321614, A=41260191, M=1, R=1\n", + "NT_187368.1: G=7661, A=7857, C=7266, T=7459, g=2249, c=2243, a=3157, t=2853\n", + "NT_187369.1: C=8914, T=6771, A=6735, a=2757, g=2497, t=2655, c=2626, G=8762\n", + "NT_187370.1: G=322, A=306, T=398, C=228, a=47274, c=27078, g=34482, t=51383\n", + "NT_187371.1: G=824, A=937, T=1236, C=690, a=43917, c=25879, t=48901, g=31415\n", + "NT_167215.1: G=16346, A=24462, T=24491, C=16092, g=13806, a=23453, c=13794, t=22953\n", + "NC_000004.12: N=461888, a=23144996, c=13003496, t=23171273, g=13090368, T=35452157, A=35416240, C=23233480, G=23240657\n", + "NC_000003.12: N=195417, c=13660493, t=23098663, a=22956666, A=36732425, C=25572990, T=36734639, g=13759689, G=25584570, R=1, Y=3, W=2, B=1\n", + "NC_000002.12: N=1645292, C=32288347, G=32342686, T=45192543, A=45077416, t=26795389, c=16029833, a=26713797, g=16108217, Y=4, R=1, W=2, K=1, M=1\n", + "NT_113948.1: g=15802, a=27709, t=27480, c=17433, A=1470, T=1122, C=936, G=737\n", + "NT_113793.3: g=20528, a=31193, t=30113, c=18348, G=21940, T=31998, A=32240, C=23349\n", + "NT_187372.1: T=5911, A=5976, C=4261, G=4721, c=3599, t=5785, a=6132, g=3677\n", + "NC_000009.12: N=16604164, t=13939089, a=13877112, c=8721401, T=21844659, A=21859217, C=16378410, G=16380119, g=8790543, R=1, Y=2\n", + "NC_000008.11: N=370500, G=19168338, C=19190509, A=26893423, T=26846852, t=16453794, a=16440107, g=9935449, c=9839664\n", + "NC_000007.14: N=375838, c=11811170, t=18954841, a=18791911, A=28266337, T=28260199, C=20506814, G=20482778, g=11896081, R=1, Y=2, S=1\n", + "NC_000006.12: N=727456, G=21987186, A=31652686, T=31697422, C=21955005, c=11691685, a=19692791, t=19675603, g=11726144, Y=1\n", + "NC_000005.10: N=272881, t=21565326, a=21366327, c=12610126, T=33389684, A=33332767, C=23121474, G=23153233, g=12726441\n", + "NT_187373.1: A=6658, G=4309, T=7030, C=4473, t=5151, c=3049, g=2841, a=4543\n", + "NT_187375.1: G=4228, C=4135, T=6279, A=6457, t=5637, a=5942, c=3236, g=3136\n", + "NT_187374.1: G=22370, A=32965, T=33188, C=22477, t=20847, g=11244, c=11257, a=22497\n", + "NC_000014.9: N=16475569, a=10499993, g=6675322, c=6580854, t=10651102, G=11883711, C=11842904, T=16260841, A=16173422\n", + "NC_000012.12: N=137490, c=9998381, t=15837633, a=15747193, A=23622916, C=17094423, T=23654592, g=10092690, G=17089988, Y=2, M=1\n", + "NC_000010.11: N=534424, c=9395745, t=14885616, a=14762774, C=18243760, T=24141939, A=24113152, G=18251419, g=9468557, R=13, Y=8, W=6, M=3, K=4, B=1, S=1\n", + "NC_000013.11: N=16381200, a=11492777, g=6529855, c=6433785, t=11548295, G=12403750, C=12405407, T=18614422, A=18554834, Y=2, K=1\n", + "NC_000011.10: N=552880, G=18315306, A=24027062, T=24071077, t=15290877, c=9610266, a=15259668, g=9666495, C=18292991\n", + "NT_187378.1: c=2127, a=3758, g=2191, t=3284, A=7179, G=6531, C=6438, T=6607\n", + "NT_187379.1: C=6659, A=6980, G=6696, T=7506, g=2129, c=2272, t=3822, a=3491\n", + "NT_187381.1: G=6803, C=6597, T=8296, A=8046, a=4049, c=2514, t=4796, g=2638\n", + "NT_113796.3: G=23733, A=32705, T=32920, C=22393, t=28513, a=26775, g=17462, c=17208\n", + "NT_187377.1: G=19059, A=27849, T=27822, C=18953, a=30680, g=20466, t=29753, c=19468\n", + "NT_167219.1: G=31699, A=31839, T=31467, C=31071, t=22132, g=20001, c=17860, a=25104\n", + "NT_113888.1: G=25707, A=30293, T=30294, C=25751, t=25399, g=15599, a=22656, c=15770\n", + "NT_187380.1: G=19392, A=28449, T=28531, C=19184, g=13431, t=25920, a=24301, c=13602\n", + "NT_187385.1: G=3874, C=2173, T=3989, A=5147, t=19894, a=35152, g=29960, c=6393, N=5969\n", + "NT_113930.2: g=16145, a=25966, t=23695, c=15239, C=22980, A=29941, T=28838, G=22787\n", + "NT_187382.1: g=28734, a=50914, t=55833, c=28315, A=82991, G=58583, T=83411, C=59467\n", + "NT_187384.1: C=9594, A=15653, T=16093, G=10755, t=65463, g=48452, c=31668, a=71804, N=11357\n", + "NT_187383.1: G=176864, A=216050, T=215669, C=173704, a=248289, g=148705, t=241862, c=151616, N=300000\n", + "NC_000017.11: N=337225, G=11569134, A=13167682, T=13189069, C=11599860, t=9516192, c=7124084, g=7282366, a=9471817, R=3, S=1, K=2, Y=5, W=1\n", + "NC_000016.10: N=8532401, t=9119330, a=8971957, c=6551766, g=6618326, C=11620976, A=13586362, T=13655576, G=11681650, R=1\n", + "NC_000015.10: N=17349864, C=11569843, T=15013059, A=15007333, G=11568711, g=6257192, a=9501336, c=6183098, t=9540753\n", + "NT_187387.1: T=6226, A=6067, G=4018, C=3877, c=3665, a=7831, t=5984, g=3875\n", + "NT_187386.1: A=25361, C=25099, T=27201, G=26924, c=9816, a=12886, t=13367, g=10100\n", + "NT_187388.1: G=27910, A=25475, T=27126, C=28004, t=23859, g=13247, a=17703, c=16448\n", + "NC_000022.11: N=11658686, G=5863266, A=6011399, T=6004578, C=5860725, a=4370815, c=3299927, t=4366147, g=3382920, R=2, W=1, Y=2\n", + "NC_000021.9: N=6621361, g=2981169, a=4844675, t=4866512, c=2936147, A=6975989, C=5249097, G=5245212, T=6989818, M=2, R=1\n", + "NC_000020.11: N=499910, T=11065170, G=9260186, C=9219090, A=10965321, c=4697043, t=7001236, g=4834286, a=6901925\n", + "NC_000019.10: N=176858, G=7823665, A=7768730, T=7771954, C=7793330, t=7510799, a=7373563, c=6161250, g=6237467\n", + "NC_000018.10: N=283680, c=5602002, t=9668263, a=9568172, T=14514556, A=14482508, C=10192453, G=10212102, g=5849549\n", + "NT_187390.1: a=6823, t=7691, c=4552, g=2831, T=6224, C=4072, A=6484, G=4134\n", + "NT_187393.1: a=29171, t=20158, c=11808, g=15336, C=3679, T=5358, A=6371, G=3939, N=3555\n", + "NT_187394.1: c=12622, t=21424, g=13238, a=22118, C=605, G=547, T=964, A=905, N=1562\n", + "NT_187395.1: t=11200, a=7176, g=7574, c=6292, G=1182, T=1778, C=940, A=1098\n", + "NT_187392.1: C=3135, A=4651, T=4841, G=3020, c=17576, a=27067, g=14104, t=29033, N=411\n", + "NT_187391.1: g=46760, a=38768, t=25544, c=4872, T=14082, G=15083, A=16456, C=8072, N=12283\n", + "NC_000024.10: N=30812367, c=2259941, t=3647964, a=3591504, G=3035689, A=4294688, T=4308204, C=3025848, g=2251205, Y=2, R=1, S=1, W=1\n", + "NC_000023.11: N=1147861, c=12709203, t=21154624, a=21011311, G=17848997, A=25743496, T=25762077, C=17814577, g=12848744, Y=2, R=1, S=1, W=1\n", + "NT_187396.1: t=652, g=480, a=610, c=418, G=24, T=32, C=24, A=34\n", + "NT_187397.1: t=608, c=457, g=388, a=702, G=4, A=4, T=2\n", + "NT_187398.1: G=9, A=9, C=11, T=9, a=614, g=343, t=544, c=403\n", + "NT_187399.1: T=23, t=421, g=315, c=272, a=389, A=28, G=10, C=14\n", + "NT_187401.1: G=56, C=62, A=83, T=81, c=790, g=932, t=1230, a=1182\n", + "NT_187400.1: c=1341, a=1765, g=1144, t=1664, T=84, G=59, A=87, C=64, N=15268\n", + "NT_187402.1: g=219, a=398, t=330, c=254\n", + "NT_187403.1: g=290, t=454, c=243, a=397, G=13, T=16, A=22, C=9\n", + "NT_187404.1: T=16, G=8, A=8, t=724, c=397, a=657, g=461, C=5\n", + "NT_187405.1: g=171, a=336, t=291, c=200\n", + "NT_187406.1: a=847, g=613, t=962, c=521, N=9433, A=7, G=7, C=5, T=4\n", + "NT_187408.1: a=387, g=201, t=308, c=227, C=15, T=11, A=20, G=10\n", + "NT_187409.1: G=7, A=15, T=8, t=739, g=454, a=887, c=527, C=9\n", + "NT_187410.1: t=828, a=676, c=432, g=483, T=30, G=13, C=12, A=15\n", + "NT_187407.1: g=622, t=1030, a=1176, c=743, G=15, A=16, T=14, C=8, N=34066\n", + "NT_187411.1: g=188, c=186, a=288, t=304, C=9, A=18, G=19, T=17\n", + "NT_187412.1: T=27, C=23, G=14, A=26, g=406, c=412, a=629, t=608\n", + "NT_187413.1: t=619, c=455, a=653, g=405, T=56, A=52, C=45, G=36\n", + "NT_187414.1: T=46, C=29, A=45, G=31, a=637, t=625, c=351, g=376\n", + "NT_187415.1: A=52, a=603, c=315, t=602, g=374, C=17, G=38, T=42\n", + "NT_187416.1: A=31, t=398, c=276, a=415, g=264, C=25, T=21, G=15\n", + "NT_187417.1: A=10, G=14, T=20, C=7, g=184, a=271, c=184, t=291\n", + "NT_187418.1: g=375, t=550, c=310, a=540, G=27, A=32, T=31, C=19\n", + "NT_187419.1: C=9, G=7, T=16, t=459, c=220, a=371, g=266, A=13\n", + "NT_187421.1: c=74, a=306, g=130, t=448, A=78, C=28, T=124, G=45\n", + "NT_187422.1: g=283, a=562, t=520, c=364, C=8, A=13, G=10, T=14\n", + "NT_187423.1: g=495, a=1021, c=267, t=1442, C=76, A=203, T=303, G=113\n", + "NT_187426.1: T=62, C=24, G=46, A=48, a=1209, t=1255, c=650, g=761\n", + "NT_187427.1: a=723, t=751, c=368, g=454, A=25, C=21, T=47, G=26\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "NT_187424.1: A=1342, T=1469, t=28404, c=14951, a=27442, g=17358, G=1027, C=909, N=81\n", + "NT_187425.1: T=2226, C=1018, G=2566, A=3253, c=7458, t=18034, a=27731, g=21725, N=28494\n", + "NT_187420.1: a=95585, t=77479, g=65178, c=43975, T=23248, G=21960, C=18922, A=24682, N=21032\n", + "NT_187428.1: A=67, T=39, G=38, g=323, a=706, t=674, c=428, C=43\n", + "NT_187429.1: T=35, A=21, G=21, C=19, g=420, a=649, t=690, c=331\n", + "NT_187430.1: C=26, T=35, a=339, g=392, t=748, c=373, G=22, A=16\n", + "NT_187431.1: A=17, T=16, a=392, t=403, c=203, g=250, G=6, C=13\n", + "NT_187432.1: A=315, G=166, C=207, T=262, g=4248, c=4146, a=6432, t=6913\n", + "NT_187434.1: a=1789, g=881, t=1612, c=1105, C=54, T=94, A=87, G=52\n", + "NT_187435.1: c=1533, a=2600, g=1307, t=2395, A=104, G=47, C=68, T=73\n", + "NT_187433.1: t=41152, g=25338, a=41758, c=22565, C=1300, A=1883, T=2123, G=1549, N=458\n", + "NT_187436.1: G=93, A=90, C=73, T=148, t=2000, a=1864, c=950, g=1143\n", + "NT_187437.1: t=1623, c=790, g=974, a=1487, C=91, T=148, G=110, A=130\n", + "NT_187438.1: a=1055, g=497, t=968, c=630, C=23, T=27, A=37, G=16\n", + "NT_187439.1: c=398, t=544, g=307, a=578, G=11, A=23, C=22, T=16\n", + "NT_187440.1: T=124, C=65, G=50, A=78, c=577, a=625, t=1099, g=365\n", + "NT_187441.1: t=693, a=610, c=377, g=438, C=16, T=12, G=9, A=13\n", + "NT_187442.1: G=7, C=10, c=379, a=107, g=394, t=91, T=2, A=3\n", + "NT_187443.1: c=11402, t=17396, g=11075, a=18985, C=905, T=1436, A=1449, G=979, N=27682\n", + "NT_187444.1: c=271, t=345, g=199, a=378, A=6, G=2, T=1\n", + "NT_187445.1: C=1, T=2, G=2, A=2, a=472, g=340, t=492, c=288\n", + "NT_187446.1: C=25, A=62, T=60, G=28, t=274, a=502, g=230, c=219\n", + "NT_187447.1: t=868, a=952, c=575, g=478, A=37, G=17, T=22, C=20\n", + "NT_187448.1: g=324, t=626, a=328, c=260, C=4, A=3, G=2, T=6\n", + "NT_187449.1: A=354, G=175, C=204, T=245, c=1251, a=2363, g=1187, t=1267\n", + "NT_187450.1: g=4653, c=5574, a=9241, t=8843, A=849, T=851, G=501, C=521\n", + "NT_187451.1: G=422, T=766, a=10475, t=10207, c=6989, g=5328, A=658, C=551, N=9078\n", + "NT_187452.1: c=873, t=1339, a=1453, g=715, C=77, T=62, G=51, A=115\n", + "NT_187453.1: a=1397, t=1373, g=707, c=833, A=58, T=53, G=44, C=48\n", + "NT_187454.1: G=232, c=1062, t=2054, a=1126, g=1047, C=225, A=313, T=445\n", + "NT_187455.1: t=1842, g=1025, a=1919, c=1070, A=87, G=54, C=70, T=91\n", + "NT_187456.1: a=888, t=972, c=478, g=598, G=25, A=23, C=18, T=39\n", + "NT_187457.1: a=1699, g=782, t=1650, c=1240, C=123, T=119, G=50, A=133\n", + "NT_187458.1: A=316, T=360, C=413, G=255, t=134, c=95, a=51, g=28\n", + "NT_187459.1: T=2, g=173, t=297, c=216, a=348, A=3, G=1\n", + "NT_187460.1: a=313, t=366, c=202, g=247, G=53, A=72, T=69, C=46\n", + "NT_187461.1: C=94, A=254, a=964, g=211, t=683, c=287, T=148, G=58\n", + "NT_187462.1: A=54, C=38, G=43, T=57, c=146, a=245, t=266, g=199\n", + "NT_187463.1: G=59, A=90, T=81, C=54, a=310, g=257, t=366, c=211\n", + "NT_187464.1: c=215, t=383, g=284, a=366, A=46, T=57, C=35, G=42\n", + "NT_187465.1: a=387, c=121, t=262, g=78, A=77, C=30, T=48, G=23\n", + "NT_187466.1: C=44, A=106, G=22, T=74, t=265, a=390, g=89, c=131\n", + "NT_187467.1: t=771, c=312, a=334, g=373, T=5, G=5, C=2, A=1\n", + "NT_187468.1: a=934, c=539, t=792, g=437, G=30, A=59, C=28, T=36\n", + "NT_187469.1: t=1008, c=640, g=544, a=1089, T=67, C=53, A=90, G=39\n", + "NT_187470.1: C=100, G=70, A=126, T=107, a=2577, g=1310, c=1527, t=2503\n", + "NT_187471.1: A=9, a=306, g=208, t=317, c=185, G=7, C=7, T=9\n", + "NT_187472.1: a=442, g=171, c=225, t=207\n", + "NT_187473.1: g=268, a=400, t=415, c=215\n", + "NT_187474.1: t=760, a=727, c=401, g=471, A=12, G=6, T=5, C=5\n", + "NT_187475.1: t=495, g=305, a=483, c=253, G=1\n", + "NT_187476.1: c=229, a=378, t=342, g=194\n", + "NT_187477.1: a=603, t=569, c=391, g=310, A=3, T=2, C=2\n", + "NT_187478.1: c=197, a=364, t=402, g=253\n", + "NT_187479.1: a=296, g=196, t=315, c=163\n", + "NT_187480.1: g=297, c=363, t=533, a=584, C=4, A=5, T=1, G=1\n", + "NT_187481.1: a=470, c=292, t=462, g=260\n", + "NT_187482.1: c=364, t=522, a=567, g=297\n", + "NT_187483.1: g=228, t=382, c=263, a=429, C=3, T=1, A=1, G=1\n", + "NT_187484.1: t=500, c=338, a=543, g=277\n", + "NT_187485.1: a=281, t=330, g=199, c=156, T=3, C=1, G=1\n", + "NT_187487.1: t=310, c=166, a=299, g=188, C=3, T=8, A=7, G=9\n", + "NT_187486.1: C=23, A=22, T=16, G=14, c=370, a=595, g=323, t=567\n", + "NT_187488.1: t=1354, a=1281, c=711, g=842, T=11, A=7, G=3, C=6\n", + "NT_187489.1: a=354, t=330, c=222, g=173, A=20, G=9, C=12, T=16\n", + "NT_187490.1: g=526, a=751, t=877, c=419, G=18, A=32, C=12, T=21\n", + "NT_187491.1: g=258, c=314, a=560, t=476, T=11, A=15, C=8, G=8\n", + "NT_187492.1: a=362, c=249, t=485, g=298, C=8, T=24, A=16, G=9\n", + "NT_187493.1: c=440, a=774, g=373, t=688, A=36, G=20, T=23, C=24\n", + "NT_187494.1: g=528, a=790, c=449, t=880, G=32, T=55, A=39, C=32\n", + "NT_187495.1: A=640, g=1167, a=1884, t=1951, c=996, C=341, G=471, T=542\n", + "NT_187496.1: A=603, T=523, G=451, g=1183, t=1774, a=1720, c=1046, C=342\n", + "NT_167214.1: G=25585, A=22327, T=24283, C=25678, a=14903, t=21872, c=15042, g=12112\n", + "NT_113901.1: G=25983, A=32929, T=33305, C=25579, t=21752, c=11442, a=20540, g=11366\n", + "NT_167213.1: G=19986, A=27656, T=27601, C=19370, t=25458, g=16122, c=16131, a=26874\n", + "NT_167220.1: g=3231, a=4502, t=4649, c=2626\n", + "NT_187500.1: G=5425, A=5627, T=6061, C=5398, a=4855, g=4287, t=5484, c=4754\n", + "NT_167218.1: G=18639, A=22762, T=23297, C=17362, a=27486, t=28363, c=20068, g=21716\n", + "NT_167208.1: G=22526, A=29729, T=29069, C=23110, a=18318, t=19946, g=10820, c=10721\n", + "NT_187501.1: G=7168, A=12865, T=11833, C=7158, t=8482, c=4396, a=9860, g=4724\n", + "NT_187497.1: g=18817, t=25908, c=18340, a=25541, A=19312, G=14429, T=18841, C=14432, N=1812\n", + "NT_187498.1: G=23530, A=30404, T=31184, C=25066, c=20384, t=30166, a=30123, g=19801\n", + "NT_187499.1: G=23945, A=31203, T=29650, C=23845, t=17364, g=11619, a=19367, c=11479\n", + "NT_187509.1: G=9460, C=9470, A=7955, T=7334, g=1532, c=1473, t=1097, a=1870\n", + "NT_187510.1: T=7098, A=6702, C=5116, G=5283, g=2656, t=3918, a=3599, c=2351\n", + "NT_187503.1: g=8619, a=11759, t=12142, c=10307, G=11863, T=14081, C=11404, A=13146\n", + "NT_187508.1: G=10496, A=13691, C=9908, T=12512, c=2968, t=4507, g=3495, a=5367\n", + "NT_187504.1: G=17884, A=26745, T=27613, C=18210, t=20908, g=11849, c=10908, a=24642\n", + "NT_187505.1: G=21648, A=27820, T=29588, C=19901, a=13937, g=9226, t=17445, c=9285\n", + "NT_187502.1: G=5880, A=7622, T=9019, C=6215, c=30406, a=49846, t=58180, g=31567\n", + "NT_187506.1: G=14807, A=22997, T=23678, C=14633, a=23051, c=13913, t=23562, g=14101\n", + "NT_187511.1: a=15128, c=22568, g=5074, t=28939, A=1754, C=2172, T=3108, G=781, N=66\n", + "NT_187512.1: G=744, T=1015, A=1154, c=10046, t=18245, g=11311, a=18629, C=707, N=9400\n", + "NT_167209.1: G=16447, A=20710, T=20349, C=14963, c=12521, t=19542, a=19935, g=13251\n", + "NT_167211.2: c=33659, a=26477, t=42902, g=13759, A=15750, T=17305, C=14400, G=12120, N=236\n", + "NT_113889.1: G=20430, A=25697, T=25901, C=20062, a=20333, c=13234, t=22146, g=13344\n", + "NT_187513.1: G=20091, A=29586, T=30031, C=19458, a=27353, c=16483, t=27453, g=16284\n", + "NW_015495298.1: G=38466, A=43933, T=44635, C=38387, g=25207, t=32084, a=30952, c=24995\n", + "NW_012132914.1: T=73335, C=63977, G=63496, A=72771, g=42795, c=42977, a=53524, t=54268\n", + "NW_019805487.1: A=8659, T=9530, C=8803, G=9559, g=1677, t=2253, a=2426, c=2048\n", + "NW_009646195.1: a=21757, c=20849, g=20301, T=21129, C=18342, A=20547, t=23448, G=19827\n", + "NW_018654707.1: G=13887, T=24663, A=23634, C=13578, a=20280, c=10730, t=22809, g=10774\n", + "NW_018654706.1: C=15846, T=20031, A=19506, G=15709, t=25256, g=22104, a=25212, c=22472\n", + "NW_009646194.1: C=35453, A=32348, G=36974, T=35487, a=11448, t=14514, g=10687, c=9583\n", + "NW_011332688.1: C=51383, A=48885, G=52585, T=47437, c=24357, t=26916, a=28635, g=25344\n", + "NW_014040926.1: G=46272, A=55835, T=53274, c=33911, g=33383, t=37584, a=40236, C=49443\n", + "NW_025791756.1: g=124667, a=150112, t=151157, c=124447, G=256685, T=254754, C=256170, A=254694\n", + "NW_009646196.1: C=12757, A=18864, T=18271, G=11956, a=17274, c=13320, t=15965, g=13615\n", + "NW_014040925.1: T=27323, A=25106, G=15259, C=14557, t=22355, g=9260, c=9169, a=17990\n", + "NW_025791759.1: A=43556, T=43191, G=27737, C=28590, a=37603, g=18963, t=31978, c=18829\n", + "NW_025791758.1: A=36107, T=34932, t=16709, c=16000, a=17711, g=16344, G=36661, C=37470\n", + "NW_025791753.1: G=69864, a=57375, t=56427, c=35704, g=36040, A=94902, C=70244, T=96208\n", + "NW_011332687.1: C=66880, A=84402, G=73144, T=92882, a=39108, t=47306, g=28337, c=28041\n", + "NW_017852928.1: c=44371, t=70186, g=42567, a=73273, A=95874, G=64811, C=68294, T=91644\n", + "NW_025791754.1: t=108178, c=51547, a=108905, g=52199, T=164625, C=96185, A=168157, G=94754, N=2891\n", + "NW_021159988.1: A=13976, G=12540, T=14942, C=11771, t=10790, a=9574, g=5364, c=5086\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "NW_014040927.1: C=22751, A=30801, t=30766, a=26696, g=23089, c=23161, T=31950, G=22991\n", + "NW_025791757.1: a=24676, g=19251, t=25998, c=18793, C=28351, A=32322, T=32325, G=28710\n", + "NW_025791768.1: g=7921, a=15886, t=16989, c=7657, T=39046, G=24933, A=37753, C=24200\n", + "NW_025791767.1: C=36162, T=51882, A=47681, G=37613, g=12986, c=12333, a=20691, t=25377\n", + "NW_018654708.1: G=56661, T=48755, C=52890, A=47070, g=30111, t=31902, a=34272, c=28370\n", + "NW_025791755.1: C=45644, A=67694, T=66791, G=46170, g=17752, a=36600, t=36502, c=18006\n", + "NW_025791766.1: G=59027, A=80785, T=84361, C=58737, a=58391, g=40779, c=40772, t=66552\n", + "NW_025791764.1: A=24951, T=25722, G=14618, C=15016, g=6325, a=13762, t=13751, c=6236\n", + "NW_018654709.1: G=23997, A=38371, T=35083, C=24916, g=10019, t=18087, c=9985, a=21200\n", + "NW_025791763.1: g=23599, a=28462, t=29651, c=23383, A=46433, G=43645, T=48290, C=41508\n", + "NW_025791762.1: A=89684, G=74876, C=79596, T=84359, a=51805, t=48952, g=35882, c=35427\n", + "NW_025791760.1: G=73364, A=81650, T=82628, C=72790, t=37400, g=23432, a=36354, c=24164\n", + "NW_025791761.1: C=58970, T=89435, G=58735, A=88645, t=73749, g=48843, c=48820, a=68054\n", + "NW_012132915.1: A=93127, C=69342, T=94831, G=69509, a=50921, t=48691, g=29103, c=25721\n", + "NW_025791765.1: G=132340, A=176795, T=172603, C=132484, a=108360, g=63779, c=63456, t=105270\n", + "NW_018654710.1: g=13223, a=19067, t=18216, c=13735, A=21446, G=15779, T=22134, C=16761\n", + "NW_021159987.1: C=27199, G=28528, T=27699, A=27473, c=7314, t=9705, g=7341, a=10716\n", + "NW_011332689.1: G=40708, A=38058, T=36924, C=40791, g=10080, c=11833, t=14525, a=15230\n", + "NW_025791770.1: A=39983, C=29923, G=32530, T=43439, g=35401, t=44129, c=35465, a=40440\n", + "NW_025791771.1: G=82783, C=77500, T=97230, A=91720, g=25146, t=39925, c=25442, a=36130\n", + "NW_011332690.1: A=59915, G=60619, C=56416, T=63942, t=35852, g=28649, a=32489, c=27617\n", + "NW_015495299.1: A=85907, T=83288, G=60503, C=59450, g=52799, t=70420, c=52844, a=69877\n", + "NW_017363813.1: T=82617, A=78470, G=58394, C=55118, t=46668, c=25087, g=24142, a=41158\n", + "NW_019805491.1: C=11471, T=21336, A=20303, G=11921, g=6111, c=6055, a=13233, t=15097\n", + "NW_012132917.1: A=4763, T=3585, a=52517, t=46122, c=29003, g=24682, C=2920, G=2126\n", + "NW_018654711.1: C=18922, A=31479, G=18905, T=30883, c=13216, t=24463, a=24420, g=13561\n", + "NW_021159989.1: c=20327, t=26186, a=25773, g=21352, A=32248, G=29716, C=27879, T=31962\n", + "NW_012132916.1: C=47014, T=69538, A=65502, G=48514, a=39523, c=28484, t=46275, g=28849\n", + "NW_009646197.1: C=59597, T=78869, A=76628, G=61762, t=51649, a=50051, c=35868, g=36744\n", + "NW_009646198.1: t=48412, g=27493, c=29120, a=49913, C=25792, G=23544, A=41878, T=38700, N=21127\n", + "NW_011332691.1: G=62929, A=79920, T=74857, C=66078, g=28096, c=28198, t=36343, a=38887\n", + "NW_013171799.1: G=12091, T=18397, A=18535, C=12240, g=4836, a=10318, c=5055, t=9450\n", + "NW_019805488.1: G=18682, A=32126, T=31408, C=18526, a=21881, c=10123, t=20993, g=10302\n", + "NW_019805492.1: C=20409, A=30990, T=32619, G=21213, g=16203, t=30937, a=26834, c=15858\n", + "NW_019805489.1: A=40021, T=41578, G=23788, c=10998, a=21814, g=11155, t=25141, C=23257\n", + "NW_021159993.1: A=32486, C=40615, T=29895, G=40300, c=7199, t=8303, a=9926, g=7950\n", + "NW_021159990.1: T=35641, C=53946, A=36370, G=50733, t=16313, g=12643, a=15008, c=15080\n", + "NW_019805490.1: a=16910, t=20154, c=12373, g=11704, T=62593, G=62946, A=56467, C=59738\n", + "NW_025791769.1: G=67878, T=92041, A=90431, C=68984, t=46802, a=46473, g=29021, c=27712\n", + "NW_021159992.1: T=8612, A=8685, G=4844, C=4885, c=3699, a=9123, t=9812, g=3816\n", + "NW_021159994.1: t=17666, c=8005, a=18559, g=8047, C=12952, T=23451, A=23446, G=13423\n", + "NW_013171800.1: G=16601, A=29017, T=30092, C=16228, g=11858, c=11644, t=25604, a=22705\n", + "NW_013171801.1: C=25698, A=44256, T=44762, G=24092, g=15796, t=34383, c=15759, a=31766\n", + "NW_025791774.1: G=28458, A=40374, T=43829, C=27554, a=19605, g=11785, c=11662, t=22424\n", + "NW_021159991.1: c=46032, a=46681, g=28353, t=62235, G=35578, C=35947, A=42159, T=44081\n", + "NW_021159995.1: G=28573, A=53043, T=52511, C=28559, g=17450, t=38981, a=39450, c=17542\n", + "NW_025791772.1: G=32516, A=50072, T=48345, C=33606, a=41854, g=30586, c=30886, t=40817\n", + "NW_025791773.1: G=15758, A=24080, C=16618, T=23484, c=5736, a=11037, t=10652, g=5999\n", + "NW_009646199.1: T=23877, C=13438, G=14136, A=23981, t=19095, a=22511, c=11175, g=10874\n", + "NW_018654712.1: C=22879, T=28858, A=29053, G=23011, a=10666, g=5537, c=5739, t=10244\n", + "NW_015495301.1: c=15532, t=20849, a=21691, g=12818, A=31790, G=35715, C=36136, T=30873, N=3\n", + "NW_015495300.1: c=17568, t=23989, a=24795, g=15104, A=36117, G=38728, C=38992, T=35141\n", + "NW_025791776.1: T=40928, G=37786, C=38962, A=42608, c=9955, t=13885, a=14669, g=9612\n", + "NW_017363814.1: G=54973, A=84505, T=82891, C=56768, c=24837, g=24436, t=46006, a=46259\n", + "NW_025791777.1: c=169191, g=167378, a=256155, t=261102, A=307089, G=196580, C=196859, T=307334, N=239897\n", + "NW_025791775.1: C=4165, T=5212, G=4631, g=4142, a=3570, c=3103, t=4585, A=4992\n", + "NW_021159996.1: A=13230, C=12289, T=13334, G=12497, g=9342, a=9887, t=10874, c=8503\n", + "NW_013171803.1: A=15933, C=11612, G=11471, T=16901, t=8381, g=4866, a=8039, c=5112\n", + "NW_025791779.1: C=33971, T=57337, G=33947, A=57860, c=19507, g=19684, a=39456, t=40723\n", + "NW_018654713.1: A=38548, G=29523, T=40725, C=29678, a=27462, c=22734, g=22865, t=31261\n", + "NW_016107297.1: g=30155, a=46171, t=50132, c=30018, T=62406, G=43857, C=41357, A=58125\n", + "NW_025791778.1: A=96012, C=69075, T=98971, G=71656, t=58983, a=52313, g=30848, c=30474\n", + "NW_016107298.1: T=100525, G=111015, A=104968, C=113442, g=58446, c=57873, a=63423, t=63367\n", + "NW_021159997.1: A=15199, G=8536, T=15337, C=8661, t=9703, g=3190, a=9074, c=3565\n", + "NW_017363815.1: T=19734, C=13929, A=18878, G=14714, c=16492, t=21144, a=18451, g=16085\n", + "NW_019805493.1: T=32094, C=18356, A=30904, G=18964, a=22523, t=25675, g=11987, c=12052\n", + "NW_009646200.1: G=26127, A=47235, T=48188, C=27117, g=19437, a=38276, t=43387, c=18563\n", + "NW_012132918.1: G=17887, A=27899, T=28057, C=17630, c=39481, t=75794, g=43434, a=70568\n", + "NW_013171802.1: A=41543, T=40009, G=24551, C=26186, t=33890, a=36766, c=21656, g=21115\n", + "NW_021159998.1: G=58864, A=46636, T=46073, C=58537, g=10458, a=12586, t=12125, c=9480\n", + "NW_025791780.1: c=24902, a=39369, t=38689, g=24805, G=54148, A=74067, T=73341, C=53807\n", + "NW_017852929.1: G=15259, A=21853, T=19551, C=16532, t=18396, g=15494, c=15831, a=19213\n", + "NW_012132919.1: C=26250, A=36140, T=36073, G=26953, a=17174, g=10602, t=16837, c=9903\n", + "NW_017852930.1: A=90337, G=52420, C=54232, T=83798, t=54553, a=65763, c=34226, g=32938\n", + "NW_025791785.1: C=56915, T=74109, A=76244, G=55053, a=51598, g=34201, c=34384, t=47240\n", + "NW_025791781.1: G=53905, A=84666, T=83232, C=53958, g=31731, c=31782, a=60802, t=64341\n", + "NW_018654714.1: G=84014, A=112172, T=113688, C=82335, g=35840, c=35511, a=62430, t=63666\n", + "NW_018654715.1: t=69302, g=43761, a=73199, c=43825, A=133155, G=92241, C=94133, T=131046\n", + "NW_018654717.1: c=430646, t=615632, g=429981, a=611880, C=974541, A=1166530, G=975372, T=1162846, N=100\n", + "NW_025791783.1: a=3611, t=5277, g=4328, c=2865, G=5126, A=6003, C=5523, T=6557\n", + "NW_025791784.1: A=21133, C=14527, T=20179, G=15466, g=7540, t=10252, c=7325, a=10483\n", + "NW_019805494.1: T=14027, C=10807, a=17836, t=15558, g=9783, c=9865, G=10542, A=14654\n", + "NW_025791782.1: T=23330, C=17594, A=21682, G=19275, g=14513, a=18031, t=21834, c=14043\n", + "NW_017852931.1: T=29578, G=19846, g=10963, c=10970, t=19517, a=18685, C=19179, A=28260\n", + "NW_018654716.1: C=37653, T=22312, G=36618, A=23427, g=12079, c=11874, a=10799, t=10358\n", + "NW_025791786.1: A=34340, T=36634, G=52778, C=48662, t=9134, g=8337, a=9181, c=8305\n", + "NW_017852932.1: T=51425, G=43238, A=55226, C=46853, a=22624, c=13770, t=19023, g=13717\n", + "NW_021159999.1: A=2997, T=3426, G=4197, C=4315, t=2977, g=3384, c=1779, a=2333\n", + "NW_013171805.1: T=23362, C=12904, A=23582, G=13544, c=10149, t=22004, a=18165, g=10389\n", + "NW_013171804.1: g=7907, c=8230, t=17033, a=17268, T=35268, A=35786, C=20667, G=21723\n", + "NW_009646201.1: A=51874, C=61344, G=62745, T=51365, g=24896, t=26566, c=22879, a=28495\n", + "NW_025791788.1: A=82576, G=59284, T=82185, C=58833, t=61127, a=58157, g=40051, c=40037\n", + "NW_025791787.1: T=60795, C=47476, A=58048, G=50624, a=34848, g=24724, t=39967, c=24235\n", + "NW_025791789.1: G=67792, A=100091, T=100288, C=67371, g=45267, c=44617, a=71723, t=72519\n", + "NW_021160000.1: T=49449, C=34354, A=51331, G=38296, g=70587, t=71881, a=99776, c=39289\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "NW_011332692.1: C=1508, A=1753, T=2189, G=1288, a=2382, c=1476, g=1166, t=2585\n", + "NW_011332693.1: A=15744, C=16581, T=15137, G=15906, a=5863, t=6571, c=4774, g=4708\n", + "NW_025791790.1: C=37221, T=36356, A=38053, G=34923, a=14196, g=10732, c=10253, t=14528\n", + "NW_013171806.1: T=32368, A=33091, G=18965, C=18650, g=13921, t=27336, a=26938, c=14238\n", + "NW_009646202.1: C=35868, T=52353, A=48219, G=38838, c=20934, t=30501, g=22004, a=29080\n", + "NW_021160001.1: T=53258, C=48722, A=53507, G=49300, g=17895, c=17815, t=25482, a=26965\n", + "NW_013171807.1: C=29978, T=52026, A=48736, G=32091, a=30055, c=18361, g=18661, t=34637\n", + "NW_011332694.1: G=25903, A=38812, t=91911, c=52310, a=93253, g=52129, T=39717, C=26129\n", + "NW_025791794.1: G=14768, A=24436, T=25408, C=15437, g=6695, a=14170, t=15103, c=6705\n", + "NW_015148966.2: G=50995, A=33046, T=32944, C=50549, a=9393, t=9115, g=7766, c=11191\n", + "NW_021160006.1: t=19821, c=16066, a=20181, g=16054, G=20435, A=28834, T=28452, C=21085\n", + "NW_011332695.1: G=21816, A=32816, T=30350, C=21644, g=18243, t=27669, a=33420, c=17594\n", + "NW_021160004.1: G=62235, A=43361, T=46478, C=66517, a=13058, t=13072, c=13194, g=12207\n", + "NW_019805496.1: G=26190, A=36373, t=40734, c=36193, a=42255, g=35753, C=27176, T=34970\n", + "NW_019805495.1: T=59990, C=35259, G=35603, A=57309, t=42455, a=35496, g=19485, c=19647\n", + "NW_025791792.1: a=27218, g=24714, c=25655, t=27357, T=68765, C=96670, A=69575, G=94877\n", + "NW_017363816.1: T=21711, A=23224, c=12416, a=21189, t=17171, C=16328, G=16024, g=12814\n", + "NW_021160002.1: a=11218, t=9077, c=4535, g=4342, G=3195, T=5280, C=2826, A=4784\n", + "NW_021160005.1: T=38032, G=34326, A=32061, C=30763, g=19367, t=23989, c=18504, a=20033\n", + "NW_019805498.1: G=20686, A=30636, T=32948, C=19765, t=25677, g=14598, a=22594, c=14263\n", + "NW_021160003.1: g=11114, a=23753, t=21739, c=11911, G=18681, T=28764, C=19442, A=30015\n", + "NW_025791793.1: G=40212, A=67919, T=66716, C=40076, t=41844, g=21906, a=44453, c=21480\n", + "NW_013171808.1: G=29116, A=39078, T=42583, C=26364, t=15088, c=7762, a=13887, g=8080\n", + "NW_019805497.1: g=23014, a=39431, c=22206, t=44598, A=53070, G=32792, T=54870, C=31656\n", + "NW_013171809.1: C=9602, T=18748, G=12343, t=17733, a=13136, c=10074, g=10536, A=17151\n", + "NW_009646203.1: A=14393, G=14026, T=13946, C=14004, g=13148, a=12735, c=12960, t=13663\n", + "NW_025791795.1: C=14775, T=13503, G=14696, A=14002, a=12538, t=11251, c=11761, g=12011\n", + "NW_021160008.1: g=13477, c=13003, t=18428, a=19571, T=34996, A=32754, C=28864, G=31438\n", + "NW_009646204.1: C=18994, T=32303, A=33246, g=19159, t=35161, c=18409, a=35069, G=19036\n", + "NW_025791791.1: G=32027, A=52553, T=52054, C=31477, t=31198, a=31928, c=14922, g=15035\n", + "NW_011332696.1: T=89082, G=61429, C=65429, c=49975, t=65322, g=49191, a=67134, A=93476\n", + "NW_018654718.1: T=214811, G=199712, C=192160, A=204202, c=47431, t=71883, g=48886, a=67753\n", + "NW_018654719.1: A=5861, T=6050, C=6416, G=6496, t=10368, a=9678, c=9952, g=9868\n", + "NW_011332697.1: C=13425, A=11968, G=14105, T=13622, a=8094, g=8073, t=9396, c=7850\n", + "NW_019805499.1: A=28613, G=21231, T=28687, C=21498, c=10647, a=15276, t=17832, g=10355\n", + "NW_018654720.1: T=38438, G=20907, A=38181, C=21875, t=19102, c=8687, a=19065, g=8553\n", + "NW_015148967.1: t=46647, a=49917, c=23274, g=21689, A=57114, G=30624, T=55212, C=31133\n", + "NW_021160007.1: t=14914, c=18208, g=13625, a=17844, A=48692, G=65608, C=71472, T=47205\n", + "NW_011332699.1: G=48101, A=59310, T=61581, C=48484, g=27602, t=42954, c=28529, a=40205\n", + "NW_021160012.1: G=51123, A=66484, C=51872, T=66024, a=54106, t=53255, g=34210, c=32838\n", + "NW_021160009.1: C=131, T=263, G=138, A=301, a=2612, t=3212, g=274, c=378\n", + "NW_009646205.1: a=4704, t=4923, c=2004, g=1977, A=6788, T=7063, G=3954, C=4042\n", + "NW_021160011.1: A=10985, C=15235, G=16334, T=12285, g=2750, t=3356, c=1990, a=2459\n", + "NW_013171810.1: t=23738, g=11134, c=10773, a=21699, G=18267, T=32509, C=18542, A=31484\n", + "NW_013171811.1: g=6383, a=11038, c=5965, t=11744, T=26949, C=17664, A=25828, G=17909\n", + "NW_011332700.1: C=19964, A=26061, T=28491, G=20557, t=18878, a=14844, c=10065, g=9902\n", + "NW_021160010.1: A=31169, T=32543, C=32158, G=31702, c=5874, t=10629, g=6726, a=8143\n", + "NW_011332698.1: A=39011, G=50679, C=53227, T=35454, c=7558, t=7128, a=7500, g=5763\n", + "NW_018654721.1: G=13211, C=12850, T=19755, A=21495, t=28797, a=30413, c=22478, g=22799\n", + "NW_021160014.1: G=28394, A=48760, C=27623, T=49032, t=37176, g=18026, a=36630, c=18587\n", + "NW_021160013.1: G=50052, T=64277, C=50759, A=64799, t=51695, c=31923, a=52649, g=33029\n", + "NW_021160018.1: G=50220, C=49489, T=64177, A=63661, g=31870, a=51675, t=52420, c=33003\n", + "NW_025791796.1: A=125115, t=94769, a=99895, c=58948, g=57949, C=83977, T=120189, G=81803\n", + "NW_018654722.1: A=116726, T=114541, G=108403, C=109506, a=71166, g=50666, t=68109, c=51815\n", + "NW_011332701.1: T=873796, G=716990, A=884485, C=720328, g=353224, t=525633, a=533071, c=354444, N=36991\n", + "NW_021160017.1: c=437704, a=652048, t=677619, g=435775, A=926901, C=711545, G=716291, T=942566\n", + "NW_013171812.1: G=11656, T=9042, C=11552, A=9843, c=3853, a=4970, g=4222, t=3878\n", + "NW_021160015.1: t=10518, g=5674, c=5571, a=9105, G=16201, A=17519, T=17939, C=15236\n", + "NW_025791799.1: T=11582, C=19074, A=11691, G=18551, g=6919, t=6743, c=7209, a=5946\n", + "NW_025791798.1: C=28603, A=36261, G=27602, t=22494, g=15590, a=22348, c=16746, T=34363\n", + "NW_021160016.1: A=62817, C=71310, G=67230, T=60219, g=25075, a=27996, t=28044, c=26573\n", + "NW_019805500.1: T=87804, G=74248, A=90019, C=77052, t=45241, g=31506, a=41803, c=32742\n", + "NW_025791797.1: a=118058, g=79091, t=129850, c=79949, A=202713, T=214645, C=163805, G=166463\n", + "NW_012132920.1: A=187178, C=144338, T=184379, G=143763, a=110816, g=71661, t=111702, c=71501, N=1340026\n", + "NW_018654723.1: A=11939, C=13989, T=10292, G=13555, a=8379, c=6920, t=6831, g=6704\n", + "NW_021160020.1: T=17892, C=22495, A=18247, G=22184, g=14206, t=13855, c=14251, a=14778\n", + "NW_012132921.1: C=19662, A=32053, G=20745, T=33460, a=19883, g=10852, t=21910, c=10571\n", + "NW_013171813.1: T=48425, A=53185, C=39699, G=37661, a=30714, t=24295, c=16740, g=16744\n", + "NW_021160019.1: T=45917, A=48467, C=36531, G=38165, t=28256, g=22589, c=21767, a=29275\n", + "NW_025791800.1: A=50714, T=48536, C=43195, G=41650, t=39813, a=42384, g=33883, c=34822\n", + "NW_017363817.1: A=47662, C=40849, T=41917, G=39735, a=30441, g=26684, t=29717, c=24914\n", + "NW_017852933.1: T=299862, G=237724, C=239986, A=300651, a=235182, c=189257, t=236833, g=187620\n", + "NW_016107299.1: A=22008, T=22704, C=28033, G=26662, c=13765, a=13752, g=13657, t=14142\n", + "NW_019805501.1: A=22138, G=16317, T=19282, C=17699, a=12966, g=9362, c=8775, t=10214\n", + "NW_025791806.1: t=17008, a=15177, g=13468, c=13541, A=26823, G=29589, T=27714, C=29289\n", + "NW_017363819.1: C=47756, T=42968, G=47541, A=42552, t=24510, g=23186, c=22735, a=25044\n", + "NW_017363818.1: A=49361, G=31158, C=31002, T=50504, a=27946, t=27648, g=14709, c=14567\n", + "NW_025791802.1: A=35869, T=34937, C=42682, G=40240, g=18838, c=19838, a=21435, t=21039\n", + "NW_025791801.1: T=67762, C=54559, A=69987, G=54723, a=41123, c=22808, g=24159, t=37718\n", + "NW_025791803.1: A=85098, T=95479, C=63620, t=71093, g=47464, c=47464, a=61667, G=66656\n", + "NW_021160021.1: c=6056, t=3984, a=5131, g=4968, A=7296, C=11621, G=10960, T=6679\n", + "NW_025791805.1: A=26478, T=27490, C=43532, G=44526, a=10736, c=11797, g=12267, t=10800\n", + "NW_018654724.1: A=16097, T=17822, G=13153, a=9301, t=11340, c=6396, C=12102, g=6859\n", + "NW_025791804.1: C=28044, G=31177, T=26860, A=23849, c=7391, t=10616, g=7610, a=9142\n", + "NW_019805503.1: A=30222, C=18180, T=29387, G=17586, t=20601, a=24144, c=11670, g=11396\n", + "NW_019805502.1: T=48723, C=39106, G=39259, A=50343, t=17700, c=10131, a=15426, g=10155\n", + "NW_014040928.1: C=29037, T=39404, A=40054, G=28916, c=12234, t=20415, g=12074, a=22967\n", + "NW_013171814.1: T=78967, C=81651, G=83630, A=75434, t=24995, g=19095, c=19187, a=24428\n", + "NW_025791810.1: C=13737, A=10328, T=9691, G=14013, g=10040, a=10412, c=11038, t=9952\n", + "NW_025791808.1: a=16459, c=14561, g=14025, t=16369, G=18844, A=18530, T=18439, C=20591\n", + "NW_025791809.1: t=26482, c=21013, g=20568, a=22388, C=29064, A=32538, G=36043, T=38070\n", + "NW_016107300.1: G=27673, A=29431, T=27726, C=26009, c=10574, g=11796, a=15932, t=14785\n", + "NW_025791807.1: T=49890, C=41616, A=49850, G=48635, g=32860, c=32757, a=39798, t=38348\n", + "NW_021160022.1: G=73065, C=71366, T=53323, A=55371, a=60595, c=59505, t=60210, g=59730\n", + "NW_009646206.1: C=50935, G=49358, A=58508, T=55829, t=44201, a=46043, c=32908, g=33135\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "NW_014040929.1: t=48834, g=46681, a=49464, c=47928, G=57858, C=56807, T=49180, A=48637\n", + "NW_016107308.1: G=16218, A=17370, T=16186, C=15424, c=6950, g=7504, a=10591, t=9602\n", + "NW_016107301.1: G=28399, A=30259, T=28482, C=26750, c=11186, g=12416, a=16683, t=16029, N=2\n", + "NW_016107302.1: G=28104, A=29842, T=28042, C=26361, c=11099, g=12357, a=16480, t=15846\n", + "NW_016107305.1: G=27041, A=28586, T=26859, C=25280, c=10186, g=11464, a=15524, t=14344, N=1\n", + "NW_016107307.1: G=27748, A=29527, T=27780, C=26084, c=11025, g=12336, a=16453, t=15760\n", + "NW_016107304.1: G=37159, A=39322, T=37541, C=34984, c=18745, g=21182, a=26334, t=25791\n", + "NW_016107306.1: G=29064, A=31254, T=29608, C=27539, c=12199, g=13263, a=18054, t=17216\n", + "NW_016107303.1: G=50813, A=53450, T=50840, C=47675, c=18209, g=20187, a=26716, t=25532, N=100\n", + "NW_016107311.1: G=15642, A=16862, T=15715, C=14973, c=7509, g=7924, a=11086, t=10842\n", + "NW_016107309.1: G=27221, A=28863, T=27185, C=25537, c=10369, g=11660, a=15677, t=14583\n", + "NW_016107312.1: G=21523, A=23135, T=24384, C=23204, c=15540, a=17992, t=17683, g=13488, N=16\n", + "NW_016107314.1: G=24556, A=25930, T=24479, C=22936, c=9443, g=10651, a=14430, t=13260, N=2, R=2, Y=1, W=1\n", + "NW_016107313.1: G=28497, A=30342, T=28580, C=26776, c=11384, g=12602, a=16879, t=16203\n", + "NW_016107310.1: G=38320, A=40423, T=38274, C=36003, c=14294, g=15485, a=20481, t=19838\n", + "NW_025791811.1: A=47443, G=33908, T=49326, C=31350, g=22489, t=34861, a=32176, c=22172\n", + "NW_025791812.1: A=50071, T=57895, C=53530, G=53002, g=32439, a=34278, t=41018, c=33498\n", + "NW_025791815.1: G=47772, A=31530, T=32258, C=46168, g=7649, a=8592, t=8276, c=7462\n", + "NW_014040930.1: t=14929, a=16669, c=12900, g=12771, A=26074, C=24358, T=25053, G=23176\n", + "NW_009646207.1: a=17107, t=15496, c=13351, g=13334, T=25099, C=23551, A=25995, G=22629\n", + "NW_025791813.1: t=38534, c=25732, g=25280, a=37666, T=64178, G=41850, A=62330, C=41182\n", + "NW_021160023.1: T=78487, G=69435, A=77222, C=69870, t=70453, g=44019, a=62662, c=47337\n", + "NW_021160024.1: t=97363, g=56477, c=56984, a=100188, A=46669, C=29816, T=43819, G=29987\n", + "NW_021160026.1: T=65049, A=66268, C=51668, G=50980, a=55964, t=53450, c=33718, g=35271\n", + "NW_025791814.1: A=206095, T=201452, G=152850, C=154495, t=90468, c=57326, a=100076, g=58016\n", + "NW_021160025.1: c=1054, t=2273, g=1914, a=1247, C=1399, T=1428, G=1723, A=1257\n", + "NW_021160031.1: T=1711, A=1899, C=1102, c=835, t=5084, a=4728, g=945, G=1131\n", + "NW_015148968.1: C=25503, A=24879, T=23644, G=23783, g=10610, c=11109, t=11926, a=13708\n", + "NW_015148969.2: g=6297, a=6132, t=8672, c=5964, G=21658, T=17432, A=14902, C=19983\n", + "NW_014040931.1: T=29182, A=29713, C=31037, G=29438, a=15734, g=12520, c=12989, t=14136\n", + "NW_009646208.1: C=26490, T=24911, G=24942, A=26029, t=12822, c=11775, a=14652, g=11406\n", + "NW_017363820.1: a=23344, g=12280, c=12774, t=22633, C=21711, T=36585, A=36704, G=21973\n", + "NW_025791820.1: c=36989, a=42536, t=38211, g=37867, C=45384, T=41313, A=43843, G=44350\n", + "NW_021160028.1: A=2583, T=3194, C=1807, t=7291, a=6499, g=2958, c=2536, G=1956\n", + "NW_025791816.1: T=11794, G=8883, C=8977, a=8849, t=8568, c=4912, g=4975, A=11852\n", + "NW_021160030.1: t=4032, g=993, c=917, a=4240, T=1564, A=1390, G=770, C=772\n", + "NW_021160029.1: a=11467, t=10251, g=4451, c=4243, A=12273, G=7048, T=11583, C=6876\n", + "NW_025791817.1: T=22365, C=18441, A=23151, G=18095, t=15146, c=13604, a=16247, g=13518\n", + "NW_025791819.1: C=31577, T=51020, A=51719, G=31475, c=21805, a=41321, t=42051, g=23151\n", + "NW_021160027.1: g=33813, a=50060, t=57239, c=34223, C=46856, T=68110, A=63811, G=49016\n", + "NW_025791818.1: C=96931, T=109814, A=114935, t=59562, c=38699, a=65652, g=38077, G=96046\n", + "NW_018654725.1: t=5016, c=2813, a=4690, g=2832, G=7129, T=10652, C=6108, A=9130\n", + "NW_009646209.1: C=10008, A=15309, G=9285, T=14843, t=15595, g=8236, c=12058, a=15816\n", + "NT_187514.1: C=19919, A=19732, G=20105, T=18318, c=6346, t=8009, g=6614, a=10485\n", + "NW_018654726.1: G=30259, A=43619, T=42665, C=30918, t=19520, a=20221, c=11227, g=11293\n", + "NT_187520.1: C=23276, T=32840, G=23379, A=32577, g=13066, a=22276, t=24079, c=13792\n", + "NT_187517.1: G=35716, A=40962, T=40908, C=36076, g=23297, c=22516, t=27786, a=29010\n", + "NT_187515.1: G=63743, T=39325, A=42141, C=65619, t=14366, c=31284, a=24310, g=23656, N=50000\n", + "NW_025791821.1: G=152302, A=174305, T=181962, C=155335, a=64645, c=37704, t=62516, g=36974\n", + "NT_187521.1: c=4145, a=6101, g=3531, t=5254, T=8410, A=8538, C=7262, G=7017\n", + "NW_003315906.1: C=19095, A=17509, T=16908, G=19586, t=9597, g=8926, a=9471, c=9176\n", + "NT_187518.1: C=22930, A=33550, T=34363, G=23723, g=8332, a=16924, t=17996, c=8016\n", + "NT_187525.1: g=6686, t=10488, c=7027, a=12527, T=25101, G=24334, C=23765, A=26312\n", + "NW_003315905.1: C=21889, T=24538, A=23831, G=21607, c=21283, t=24459, g=21072, a=23760\n", + "NW_003315907.2: C=44750, A=73398, T=77340, G=45838, t=46574, g=20189, a=38010, c=20481\n", + "NT_187516.1: g=27648, a=36443, c=28329, t=39595, A=76697, T=81641, G=68681, C=66567\n", + "NT_187519.1: c=61304, a=107510, g=60178, t=98607, G=113115, A=179460, C=118207, T=173277\n", + "NT_187526.1: A=13767, T=14324, C=11844, G=12682, t=6203, g=3342, a=4841, c=3884\n", + "NT_187522.1: G=22041, C=23714, A=22599, T=23885, a=8165, g=5791, c=6183, t=8238\n", + "NT_187530.1: G=13742, A=22167, T=22603, C=13921, t=13054, c=6387, a=12219, g=6302\n", + "NT_187528.1: G=16711, A=19900, T=21650, C=16201, a=10611, c=6307, g=6193, t=12526\n", + "NW_003315908.1: A=26686, G=19100, T=28121, C=17977, c=9296, t=16625, a=16162, g=9423\n", + "NT_187524.1: G=11126, A=14589, T=15453, C=11800, g=15936, t=25577, c=16363, a=22197\n", + "NT_187531.1: T=24414, G=15140, A=22773, C=14393, a=17024, g=11009, t=22378, c=10888\n", + "NT_187529.1: G=38192, A=40466, T=41923, C=41597, g=11073, a=16266, t=20417, c=13691\n", + "NW_003571033.2: a=6849, t=8961, c=4972, g=5157, C=14458, A=18625, T=20289, G=16820\n", + "NT_187535.1: A=19020, C=12617, T=20847, G=13717, t=15476, g=7906, a=11815, c=7789\n", + "NW_003315909.1: a=15135, t=12576, g=8183, c=8880, C=16099, T=23475, G=15554, A=23919\n", + "NT_187523.1: G=30475, A=28839, T=31160, C=28236, a=12232, g=9851, c=8881, t=11904\n", + "NT_187527.1: G=38137, A=26878, T=28526, C=35730, g=10297, c=11126, t=12234, a=11238\n", + "NW_003871060.2: G=22981, A=28436, T=28411, C=23512, c=14432, a=21666, g=14469, t=19244\n", + "NW_003315913.1: T=31864, C=18612, A=30275, G=19656, t=26630, g=14576, a=24424, c=14634\n", + "NT_187537.1: c=20724, a=26195, g=19629, t=25798, A=35204, G=30721, T=35102, C=30735\n", + "NT_187538.1: G=15246, A=18494, T=17524, C=15536, g=10450, a=14177, t=11834, c=9773\n", + "NT_187533.1: G=21593, A=35150, T=32830, C=23774, g=10690, t=18637, a=20013, c=10962\n", + "NT_187534.1: G=29510, A=28996, T=28744, C=29206, a=11674, t=13298, g=10559, c=10442\n", + "NT_187539.1: G=25373, A=32171, T=29995, C=25518, c=14706, t=20079, g=14321, a=22241\n", + "NT_187532.1: C=34838, A=31422, T=33465, G=38016, g=16446, c=16027, a=17415, t=17683\n", + "NT_187536.1: t=36554, a=38892, g=19561, c=18443, T=42919, A=43425, C=24108, G=24350\n", + "NT_187540.1: G=28694, A=48021, T=46940, C=30040, g=11129, c=11462, t=21385, a=22575\n", + "NW_003315915.1: G=41197, A=74311, T=72289, C=41726, t=49048, g=22337, c=23592, a=51687\n", + "NT_187541.1: c=9714, a=19459, g=9672, t=13932, C=11951, A=18473, T=16813, G=11929\n", + "NT_187542.1: T=22724, C=14581, A=21919, G=15743, t=13487, a=13737, c=8456, g=9265\n", + "NT_187544.1: C=17874, T=30653, A=30741, c=10243, a=19595, t=20668, g=10217, G=18974\n", + "NT_187550.1: G=27720, A=21267, T=21364, C=28348, t=7293, c=6858, a=6833, g=6453\n", + "NW_003315914.1: G=20200, A=31950, T=32719, C=20085, t=19191, g=10351, a=19521, c=10519\n", + "NT_187545.1: G=28415, A=38383, T=39006, C=25156, t=23789, g=15112, a=21927, c=14156\n", + "NT_187543.1: G=36233, A=51194, T=46977, C=39816, g=12497, a=23614, c=13782, t=19983\n", + "NT_167250.2: G=64932, T=107659, C=65266, A=106431, g=41566, t=81555, a=77515, c=41552\n", + "NW_003315920.1: G=9268, A=16743, T=16780, C=9576, g=4773, c=4813, a=10269, t=10506\n", + "NW_003315918.1: A=15278, G=10286, C=9594, T=16778, g=9046, t=16626, c=8800, a=14833\n", + "NT_187548.1: A=30903, C=43758, T=27872, G=44082, a=7822, c=8527, t=7750, g=8329\n", + "NT_187549.1: A=33486, T=34045, C=21249, G=22170, a=18373, g=10724, t=21967, c=10694\n", + "NT_187551.1: C=22864, A=31758, G=22688, T=29210, t=17096, c=10863, a=19275, g=10804\n", + "NT_187547.1: G=45409, A=33534, T=36307, C=44852, c=7973, t=9910, a=9050, g=8675\n", + "NW_003571036.1: A=43801, G=25225, C=25446, T=45306, t=30435, g=14014, c=14303, a=28322\n", + "NW_003315917.2: A=243776, C=155219, T=244010, G=156808, g=143765, t=215539, a=210131, c=143680, N=100000\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "NT_187557.1: G=12814, A=14530, T=14502, C=12985, c=4115, a=5858, t=5869, g=4332\n", + "NT_187546.1: T=22666, C=19057, c=9995, t=15578, a=12783, g=10913, A=19850, G=21050\n", + "NW_003315919.1: G=20467, A=32573, T=32717, C=19725, t=20991, c=11724, a=23675, g=11587\n", + "NW_003315921.1: G=15960, A=23919, T=23516, C=15973, a=14860, g=8044, t=14384, c=8080\n", + "NT_187555.1: G=20293, A=35474, C=20118, T=35428, c=10174, a=22627, t=21942, g=9752\n", + "NT_187554.1: A=25863, C=15185, T=25609, G=15129, t=22961, a=23999, c=11651, g=11751\n", + "NT_187556.1: T=183137, A=194998, C=116551, a=96045, g=43173, t=86325, c=43272, G=106979\n", + "NT_167244.2: T=403803, G=341689, C=342108, A=412965, c=178306, a=261978, t=250320, g=179662, N=2301543\n", + "NT_187558.1: C=36642, A=29786, T=28548, G=35237, g=5966, t=7551, a=8203, c=6019\n", + "NW_004166862.2: A=35924, C=32742, G=44072, T=38242, a=10454, g=6625, t=11430, c=6334\n", + "NW_003315922.2: C=19090, A=25749, T=25765, G=19300, g=5249, t=9277, a=9151, c=5602\n", + "NT_187559.1: A=27244, T=29520, C=18287, G=19873, t=22128, g=12119, a=17462, c=11533\n", + "NT_187552.1: T=36846, C=35063, G=34874, A=34308, g=11974, c=10806, t=19416, a=14249\n", + "NT_187561.1: g=17608, a=25804, t=25397, c=17416, C=26406, T=35092, G=26080, A=35783\n", + "NT_187553.1: G=51663, C=51512, T=52150, A=53663, t=18137, g=12683, c=12175, a=19799\n", + "NT_187562.1: G=179266, A=227106, T=227252, C=181027, g=54263, a=95305, c=54350, t=93001\n", + "NT_187563.1: G=28329, A=22827, T=23160, C=30110, t=5882, g=4686, c=5464, a=5976\n", + "NT_187572.1: C=26133, A=24585, T=28923, G=27066, c=7870, t=13145, g=7928, a=9956\n", + "NT_187560.1: C=40960, T=41327, A=34730, G=47399, t=13350, g=11847, c=8899, a=11476\n", + "NT_187570.1: a=24020, g=14877, c=16557, t=23981, G=50092, A=59039, T=60979, C=50685\n", + "NT_187564.1: G=37843, A=49082, T=47818, C=38010, a=29345, g=21505, c=20749, t=27103\n", + "NT_187568.1: C=53466, A=51093, G=59110, T=60394, c=13119, a=14448, t=19329, g=11777\n", + "NT_187565.1: C=57798, G=60824, T=57731, A=56268, t=17621, a=16987, g=13646, c=11561\n", + "NT_187576.1: T=193518, C=159887, A=188011, G=169043, t=87406, c=52794, g=53228, a=81619\n", + "NT_187575.1: C=8567, G=9929, A=6857, T=7528, t=1062, c=877, g=944, a=876\n", + "NT_187574.1: A=22005, T=23373, G=36693, C=32870, t=4446, g=4932, a=4627, c=4589\n", + "NT_187566.1: A=28530, G=26237, C=22444, T=27924, g=6887, c=6016, a=11025, t=12749\n", + "NT_187569.1: C=20701, T=17692, G=18535, A=19184, g=12976, t=14505, a=15726, c=12925\n", + "NT_187573.1: C=31056, G=29781, T=24939, A=26463, a=12882, g=10948, c=11098, t=11816\n", + "NT_187571.1: C=69070, A=46445, G=67786, T=45437, g=18617, c=19013, t=20645, a=18828\n", + "NT_187567.1: A=70068, T=70069, G=45168, g=26436, c=26794, a=46708, t=44551, C=44621\n", + "NT_187577.1: a=90138, g=51960, t=104752, c=50696, C=60044, T=105684, A=98864, G=62354\n", + "NW_003315929.1: A=13297, C=11825, T=12687, G=11905, t=7708, g=4581, a=5184, c=4364\n", + "NW_003315931.1: T=9711, A=10373, C=7669, G=7639, g=5416, t=6624, a=7686, c=4914\n", + "NW_003315928.1: T=35875, C=23566, G=24965, A=33784, c=7917, a=13821, t=14888, g=8172\n", + "NW_003315930.1: A=32601, C=24068, T=33505, G=24592, t=18908, c=10617, g=10843, a=16152\n", + "NW_003315934.1: C=23468, T=34762, A=34310, G=23662, t=19495, g=11808, a=19530, c=12219\n", + "NT_187579.1: a=29234, t=34214, g=18447, c=19601, T=22550, C=16994, A=23100, G=17356\n", + "NW_003315935.1: G=38120, A=48976, T=45600, C=38909, a=45640, c=27800, t=37426, g=27331\n", + "NT_187578.1: c=23989, t=44716, a=46225, g=25051, G=60486, T=89794, C=58733, A=90088\n", + "NT_187582.1: T=12641, A=11159, C=12465, G=13300, t=5638, c=4103, g=4003, a=4398\n", + "NT_187584.1: A=27881, T=27815, C=36248, G=36020, c=12143, g=11023, a=12904, t=13058\n", + "NW_003315936.1: G=16393, A=28954, t=22694, c=9780, a=20052, g=10046, C=16494, T=29994\n", + "NT_187586.1: C=42074, T=28140, G=44578, A=27924, g=17438, t=16153, c=17273, a=16553\n", + "NW_003871074.1: C=23351, T=34575, A=37340, G=22587, a=23835, g=12682, t=24333, c=12706\n", + "NT_187583.1: G=23124, A=34963, T=32539, C=23313, g=16911, t=26376, a=30743, c=16090\n", + "NT_187585.1: G=64705, A=54686, T=49976, C=67675, t=15508, g=13978, c=13934, a=16402, N=31\n", + "NW_003871073.1: G=21913, A=37948, T=37642, C=22483, t=26082, g=13344, a=28477, c=13109\n", + "NT_187588.1: c=2218, t=3311, g=2206, a=4096, A=8716, C=5882, T=7867, G=5794\n", + "NT_187581.1: a=13091, g=8000, t=13476, T=38983, A=37569, G=34242, C=33080, c=7728\n", + "NW_003315938.1: A=23287, T=22711, C=15437, G=15071, t=13221, a=14934, c=8144, g=7999\n", + "NW_003571049.1: c=8274, t=9812, a=10784, A=31002, C=33962, T=30863, g=7937, G=34679\n", + "NW_003315941.1: c=7857, a=14734, t=16838, g=7993, C=17072, A=27705, T=28744, G=17712\n", + "NW_003315939.2: A=25741, T=24350, C=18434, G=16796, g=15557, c=16138, t=25019, a=27143\n", + "NT_187587.1: T=41791, C=32498, G=30469, A=44564, t=24611, g=17788, c=18396, a=28022\n", + "NW_003571050.1: A=83190, C=52135, T=81322, G=48869, c=24081, t=45397, g=23172, a=50105\n", + "NT_187591.1: C=11155, A=10143, T=9719, G=12129, c=3164, a=2762, t=4324, g=2738\n", + "NT_187589.1: C=13259, T=18003, A=15426, G=14066, a=4244, t=5474, g=2666, c=2923\n", + "NW_003315942.2: G=19577, A=27115, T=29134, C=19035, a=16409, c=10625, t=20021, g=10958\n", + "NT_187590.1: C=20611, T=23560, G=21939, A=20206, g=6810, t=10306, a=8548, c=7518\n", + "NT_187597.1: T=21391, G=12142, A=22019, C=11950, c=5873, a=12767, t=11966, g=5724\n", + "NT_187594.1: G=23926, T=34619, A=35742, C=29279, g=12520, c=14841, a=21108, t=19649\n", + "NW_003315940.1: T=34530, G=24922, A=32907, C=23843, a=19049, t=23142, g=13259, c=12667\n", + "NT_187593.1: G=25905, A=39968, T=36001, C=28558, g=9281, c=9503, t=14869, a=16221\n", + "NT_187596.1: T=7171, A=6343, C=8990, G=9263, g=1397, c=1152, a=1121, t=1850\n", + "NT_187595.1: A=34192, T=34712, G=19650, C=19773, c=9651, t=21100, g=9709, a=20347\n", + "NT_187599.1: A=33796, T=30313, G=37610, C=39720, a=12294, c=8494, t=10046, g=8430\n", + "NT_187598.1: A=54378, C=35409, T=51874, G=33869, t=42505, a=47449, g=28447, c=28235\n", + "NT_187592.1: G=50546, T=52902, A=55129, C=52411, g=20331, c=19079, t=27987, a=28528\n", + "NT_187602.1: G=62368, A=90201, T=89797, C=63904, t=58819, g=29947, a=54362, c=29601\n", + "NT_187600.1: T=261337, A=251738, C=237906, G=239715, a=106230, c=69694, g=68596, t=116177\n", + "NT_187601.1: C=242426, A=272582, G=244803, T=274339, g=100337, c=96878, a=137584, t=142162\n", + "NT_187609.1: g=7429, t=6787, a=7824, c=7381, A=7520, C=10215, T=7143, G=9683\n", + "NT_187610.1: C=22443, G=22699, A=15476, T=18064, c=13931, g=14054, a=13020, t=14506\n", + "NW_003315943.1: T=49528, G=38978, A=49260, C=39207, c=25152, g=25132, t=35024, a=34246\n", + "NT_187604.1: G=38229, A=42928, T=45794, C=37926, t=30167, c=20016, a=27475, g=20519\n", + "NT_187605.1: G=28574, A=37798, T=37049, C=28874, t=33315, a=33654, g=22436, c=23217\n", + "NT_187603.1: G=42934, A=51755, T=49705, C=42935, g=31248, t=38835, a=39172, c=30798\n", + "NT_187606.1: G=72762, A=80692, T=79940, C=72907, c=25942, a=36764, g=25565, t=36308\n", + "NW_003315944.2: A=76290, G=73200, C=76131, T=72060, t=23185, c=20051, g=20733, a=27123\n", + "NW_003315946.1: G=8091, A=13174, T=11642, C=9187, a=13991, g=11301, t=11552, c=10734\n", + "NW_003315945.1: G=32958, A=40042, T=38103, C=34688, a=15921, g=8959, c=8879, t=12912\n", + "NT_187608.1: C=40463, A=31992, G=41143, T=31879, t=22182, a=21275, g=21977, c=21946\n", + "NT_187611.1: c=20899, a=20709, t=19119, g=21964, G=31360, C=32416, T=24480, A=25741\n", + "NT_187613.1: a=40401, g=39195, t=36889, c=39608, T=52339, C=64737, G=59845, A=58343\n", + "NW_003315952.3: G=69361, A=64716, T=61194, C=78200, t=25205, c=23443, g=24375, a=29197\n", + "NT_187607.1: C=342152, A=393569, G=349926, T=405423, c=265521, g=264469, t=329793, a=308847\n", + "NT_187614.1: A=467130, G=423937, T=471752, C=417731, a=304656, g=245066, c=243803, t=302999\n", + "NW_003871092.1: C=9311, A=12851, G=9926, T=13678, c=4967, a=6286, g=4476, t=8850\n", + "NW_003315955.1: C=14109, T=12473, A=11192, G=14280, c=9165, t=10095, a=9434, g=9471\n", + "NW_003315953.2: G=24228, A=26050, T=27637, C=24016, t=9771, a=9065, g=6043, c=6341\n", + "NT_187616.1: A=20756, G=15442, T=18153, C=16843, a=11777, g=8498, c=7976, t=9318\n", + "NW_003315954.1: C=27753, A=44837, T=45686, G=27803, t=23940, a=26371, g=13836, c=13769\n", + "NT_187615.1: t=24167, a=28596, g=13416, c=13974, T=46174, C=31236, A=48845, G=29419\n", + "NW_003871091.1: A=53368, T=56699, C=38330, G=41276, c=16089, t=29021, a=26990, g=16358\n", + "NT_167251.2: T=294441, C=245460, A=291790, G=252014, t=194109, c=151693, g=152381, a=190104, N=50000\n", + "NT_187618.1: G=11647, A=20356, T=21701, C=12330, c=7319, t=17097, a=14080, g=7207\n", + "NW_003315957.1: g=8321, a=15107, t=13558, c=8423, T=18158, C=11503, A=18239, G=11243\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "NT_187612.1: G=38743, A=28643, T=30354, C=39799, t=13361, c=9054, a=9808, g=9159\n", + "NW_003315958.1: A=36269, G=33776, T=33606, C=34576, c=6171, a=10391, t=7364, g=5797\n", + "NW_003315959.1: G=21363, A=31831, T=30515, c=11012, t=17952, a=20056, g=10864, C=21196\n", + "NW_003315961.1: T=30504, G=28217, C=29775, A=29982, c=8822, a=11555, g=8489, t=12203\n", + "NW_003315960.1: A=31174, C=18536, T=29920, G=19049, g=8234, t=16876, a=16556, c=7933, N=50000\n", + "NW_003315956.1: T=53352, G=39670, A=50773, C=39147, t=35291, g=20940, a=29541, c=21117\n", + "NT_187621.1: C=13587, A=7489, G=12088, T=6392, g=3927, c=3662, a=3124, t=2700\n", + "NT_187622.1: A=6653, C=11534, T=6358, G=11895, c=6620, t=5290, a=6365, g=7019\n", + "NT_187619.1: t=3687, c=3567, g=3781, a=3823, C=6609, A=6238, G=8398, T=7053\n", + "NT_187617.1: c=6800, a=9788, g=7330, t=9658, A=31395, T=31436, G=36026, C=35566\n", + "NW_003315963.1: C=16065, A=21580, G=17099, T=23677, t=21973, g=17655, a=20320, c=17495\n", + "NW_003315965.1: G=18941, A=26897, T=27976, C=18799, a=28598, c=17996, t=30292, g=18525\n", + "NW_003315964.2: c=16073, a=24396, g=15884, t=22757, C=18227, A=27518, T=26945, G=18422\n", + "NW_003315962.1: G=35923, T=55588, A=53885, C=40403, g=38307, t=58851, c=41535, a=61165\n", + "NT_187625.1: C=16225, T=8014, A=10372, t=1744, a=2423, g=2860, G=14477, c=2546\n", + "NW_003315967.2: g=4184, a=7696, t=9008, c=4080, G=7481, T=12404, A=11695, C=7369\n", + "NT_187623.1: T=19430, G=25887, A=22345, C=27732, c=5225, a=6779, t=5757, g=5619\n", + "NW_003315966.2: G=21642, A=22667, C=21774, T=20974, g=8962, t=10454, c=9092, a=12821\n", + "NT_187620.1: G=33549, a=25908, t=28732, c=17742, g=18602, T=38575, A=37634, C=33020\n", + "NT_187628.1: g=16107, a=34109, t=22100, c=16856, T=22200, A=25117, G=14504, C=15750\n", + "NT_187624.1: G=42623, A=31864, T=36651, C=40374, c=7711, a=7438, g=7092, t=9680\n", + "NW_003571054.1: T=124070, G=130339, C=129269, A=124563, a=98707, c=87087, g=88782, t=99899, N=105000\n", + "NW_003315969.2: T=12524, G=8972, A=11840, C=8910, t=10279, a=8916, c=6669, g=6543\n", + "NT_187626.1: G=16990, C=17348, T=11722, A=13620, c=5339, t=5299, a=7236, g=5138\n", + "NT_187627.1: G=16479, A=23232, T=23429, C=16164, t=19580, c=13300, a=18496, g=13220\n", + "NW_003315970.2: C=11591, A=16228, T=14980, G=11883, a=18090, t=15435, g=14486, c=13996\n", + "NW_003315968.2: A=38033, C=21677, T=38561, G=22240, t=28483, g=13626, c=12630, a=25947\n", + "NT_187632.1: A=31369, T=31120, G=33542, C=35046, c=12379, t=15329, g=12114, a=15363\n", + "NT_187629.1: C=37676, A=45374, T=43610, G=37597, t=28233, a=27490, c=19937, g=19997\n", + "NT_187633.1: A=45615, G=52251, C=51245, T=46890, c=26116, g=26350, a=27425, t=28243\n", + "NT_187631.1: A=18037, G=19696, C=19349, T=18978, a=6429, t=7144, g=6116, c=5582\n", + "NW_003315972.2: A=14126, G=13144, a=11086, g=8945, c=9438, t=12276, T=14748, C=13161\n", + "NT_187635.1: g=13622, a=25838, t=24171, c=14036, G=13156, T=19937, C=13291, A=20155\n", + "NW_003315971.2: T=26405, G=24016, C=24879, A=27008, t=15794, c=13707, a=17317, g=13685\n", + "NT_187646.1: C=22610, A=32873, T=34161, G=23027, g=7924, a=16388, t=17335, c=7894\n", + "NT_187648.1: A=29094, G=23119, C=23035, T=28690, a=35481, c=22318, t=30446, g=21975\n", + "NT_187630.1: c=17966, g=18237, a=29804, t=24699, T=48400, C=36381, G=34488, A=53691\n", + "NT_187634.1: G=38596, A=33518, T=32475, C=37197, c=34312, t=39473, a=35079, g=34219\n", + "NT_187647.1: G=30714, A=28967, T=31279, C=28342, a=11974, g=9505, c=8627, t=11810\n", + "NT_187649.1: G=26470, A=26634, T=24985, C=29964, g=12906, t=14361, a=14540, c=13036\n", + "NT_187652.1: T=22300, C=19196, c=9839, t=15262, a=12546, g=10601, A=19713, G=21500\n", + "NT_187655.1: C=23644, A=23604, G=25507, T=27001, c=6818, t=12923, a=10176, g=7286\n", + "NT_187653.1: c=8080, t=10391, a=11859, A=36310, T=34711, C=41227, G=40052, g=8239\n", + "NT_187650.1: G=53113, A=71660, T=67883, C=57061, g=22573, a=42701, c=25440, t=38116\n", + "NT_187651.1: T=181591, C=114018, A=179444, G=116689, t=154559, g=100296, a=148805, c=99016, N=50000\n", + "NT_113891.3: A=812637, T=798595, G=695321, C=695596, t=512957, g=377411, a=528568, c=374180\n", + "NT_187656.1: g=6488, a=5715, t=6581, c=5589, A=15328, T=19460, C=20794, G=26756\n", + "NT_187662.1: T=23853, G=29270, C=25470, A=21350, a=9263, g=9275, t=10369, c=8871\n", + "NT_187664.1: a=11610, g=11969, t=10942, c=12240, T=23328, C=31831, G=29929, A=25250\n", + "NT_187657.1: A=34427, T=33583, C=41210, G=41472, c=15303, g=14267, a=17864, t=16499\n", + "NT_187654.1: G=57594, C=58125, T=58116, A=57512, c=18535, g=19142, t=26143, a=23520\n", + "NT_187659.1: G=25901, C=24491, A=30926, T=32305, g=18353, t=24384, c=18225, a=21799\n", + "NT_187658.1: A=110078, C=70109, T=108644, G=67646, c=37930, t=64487, g=36888, a=76567\n", + "NT_187660.1: T=836917, G=685519, A=848267, C=688847, g=339196, t=505461, a=513478, c=339722, N=404007\n", + "NW_003871093.1: C=10547, A=14861, G=11351, T=15515, c=7020, a=9275, g=6785, t=12716\n", + "NW_004504305.1: T=12165, G=12624, C=12617, A=10722, t=7263, c=6098, a=6449, g=6075\n", + "NT_187665.1: A=36350, G=34359, T=32728, C=36704, c=7604, a=11451, t=8127, g=6738\n", + "NT_187666.1: T=30067, G=27959, C=29205, A=29506, c=8820, a=11539, g=8444, t=12170\n", + "NT_187661.1: T=57904, A=56490, C=52628, G=52601, c=21765, t=29558, g=22894, a=31960\n", + "NT_187667.1: A=32770, G=37179, T=31479, t=37880, c=33086, g=32004, a=33552, C=36059\n", + "NW_003571055.2: T=86950, G=90505, C=89083, A=87655, a=79955, c=73136, g=75496, t=80740, N=66000\n", + "NT_187663.1: T=239848, C=218065, A=240726, G=215557, t=140119, c=113127, g=112539, a=143209\n", + "NT_187678.1: G=27755, A=27417, T=25597, C=31036, g=12759, t=14292, a=14566, c=13118\n", + "NT_187688.1: G=26623, A=26770, T=25078, C=30137, g=12909, t=14363, a=14545, c=13033\n", + "NT_187681.1: g=12476, a=13006, t=13387, c=12358, A=33174, T=36471, C=44996, G=52744\n", + "NT_187682.1: T=28665, G=26891, C=27993, A=29118, t=16622, c=14456, a=18017, g=14341\n", + "NT_187680.1: T=38914, A=38506, G=36865, C=37102, t=21635, c=16423, a=23512, g=16325\n", + "NT_187679.1: G=82852, A=115743, T=110010, t=46816, c=28605, a=50532, C=91878, g=29363\n", + "NW_003571056.2: T=55608, G=60932, C=59204, A=56187, a=57041, c=54515, g=56109, t=57708, N=607000\n", + "NT_167245.2: T=695345, G=613355, C=614136, A=709917, c=328172, a=461002, t=446156, g=330634, N=406094\n", + "NT_187690.1: G=26845, A=26946, T=25212, C=30351, g=12892, t=14335, a=14559, c=13030\n", + "NT_187689.1: C=34435, A=30496, T=32929, G=36595, g=15418, c=14400, a=16282, t=16796\n", + "NW_003571057.2: T=52158, G=57075, C=56065, A=52572, a=55572, c=52925, g=54136, t=55338, N=656000\n", + "NW_003571058.2: T=48730, G=53072, C=52596, A=48715, a=54379, c=52547, g=53416, t=54935, N=648000\n", + "NW_003571059.2: T=57172, G=62193, C=60825, A=57898, a=58096, c=55222, g=56614, t=58663, N=536000\n", + "NT_167248.2: T=713687, G=629814, C=629663, A=723584, c=336138, a=464468, t=453569, g=338806, N=316659\n", + "NT_167247.2: T=632115, G=565684, C=566890, A=645413, c=290449, a=403939, t=390662, g=294174, N=1038487\n", + "NT_167246.2: T=681862, G=582235, C=579563, A=692111, c=322221, a=462317, t=450885, g=323927, N=582522\n", + "NT_187692.1: g=4582, a=7562, t=7506, c=5302, C=10856, G=10753, A=15080, T=15111\n", + "NT_187691.1: G=27047, A=27263, T=25466, C=30818, g=12909, t=14397, a=14653, c=13054\n", + "NT_187637.1: C=28391, A=28530, T=30298, G=26807, g=11187, a=16025, t=16703, c=12458\n", + "NT_187636.1: A=42335, C=42190, T=44740, G=39772, a=22530, t=23329, c=17650, g=16261\n", + "NW_003571061.2: T=92112, G=96550, C=95899, A=92175, a=78712, c=70607, g=71990, t=78434, N=120000\n", + "NW_003571060.1: T=136857, G=141845, C=140508, A=137735, a=112165, c=97846, g=101064, t=114080, N=5000\n", + "NT_187693.1: T=150608, G=156057, C=154389, A=151817, a=119935, c=104552, g=107559, t=121883\n", + "NT_167249.2: T=703086, A=710501, C=598134, G=604030, t=453444, g=322911, c=320097, a=462050, N=755016\n", + "NT_187638.1: a=14996, t=15611, c=11545, g=10458, C=26013, A=26229, T=27709, G=24492\n", + "NT_187639.1: t=16786, c=12547, a=16166, g=11317, C=28475, A=28585, T=30362, G=26789\n", + "NT_187642.1: T=27584, C=25716, A=26056, G=24392, g=10342, t=15457, a=14784, c=11201\n", + "NT_187640.1: A=34845, C=34988, T=36862, G=32789, g=13086, t=19099, a=18132, c=14438\n", + "NT_187644.1: A=31260, T=32967, G=29341, C=31204, c=13042, t=17677, g=11972, a=17036\n", + "NT_187643.1: T=30343, C=28468, A=28566, G=26801, c=12456, t=16760, g=11218, a=16086\n", + "NT_187645.1: T=30303, C=28434, A=28519, G=26783, c=12497, t=16779, g=11238, a=16127\n", + "NT_187641.1: A=35061, C=34620, T=36859, G=32734, a=20159, c=15445, t=20408, g=14226\n", + "NT_187672.1: G=20824, A=22189, T=20965, C=19689, c=7678, g=8491, a=12269, t=11006\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "NT_187669.1: T=30313, C=28435, A=28540, G=26792, c=12478, t=16778, g=11221, a=16108\n", + "NT_187670.1: c=13091, a=17099, g=12013, t=17641, C=31104, A=31231, T=32975, G=29362\n", + "NT_187668.1: C=35186, T=36942, A=34910, G=32822, t=19264, a=18266, g=13129, c=14675\n", + "NT_187673.1: A=28589, T=30343, C=28438, G=26806, c=12494, t=16749, g=11211, a=16071\n", + "NT_187671.1: A=30413, C=26622, G=28627, T=29052, t=21288, g=18217, a=21190, c=15523\n", + "NT_187674.1: A=31511, C=27367, G=29173, T=29998, c=16254, t=22124, g=18709, a=22869\n", + "NT_187675.1: C=41801, A=47041, G=44496, T=44828, t=29136, c=21362, g=24022, a=29538\n", + "NT_187676.1: a=20646, g=17974, t=20946, c=15309, G=28321, T=28621, A=29784, C=26334\n", + "NT_187677.1: C=25755, A=29567, G=27558, T=28309, t=21821, g=18201, a=22421, c=15720\n", + "NT_187683.1: A=29538, C=26085, T=28354, G=27994, a=20496, g=17701, c=15232, t=20803\n", + "NT_187685.1: t=16722, c=12309, g=11263, a=16074, C=28284, A=28483, T=30250, G=26763\n", + "NT_187687.1: T=30337, C=28463, A=28573, G=26822, c=12403, t=16710, g=11190, a=16039\n", + "NT_187684.1: T=35971, C=34327, A=34104, G=31940, c=14392, t=18871, g=12867, a=18301\n", + "NT_113949.2: G=28410, A=30286, T=31982, C=30314, t=16854, c=12429, a=15759, g=11347\n", + "NT_187686.1: T=38639, G=34303, A=36502, C=36610, t=20319, c=15527, a=19781, g=14051\n", + "NC_012920.1: G=2169, A=5124, T=4094, C=5181, N=1\n", + "CPU times: user 18.3 s, sys: 8.26 s, total: 26.5 s\n", + "Wall time: 10min 25s\n" + ] + } + ], + "source": [ + "%%time\n", + "seq_counter = SeqCounter('../data/GRCh38_latest_genomic.fna', 8)\n", + "print(seq_counter)\n", + "seq_counter.output_results()" + ] + } + ], + "metadata": { + "kernelspec": { + "display_name": "Python 3 (ipykernel)", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.7.6" + }, + "varInspector": { + "cols": { + "lenName": 16, + "lenType": 16, + "lenVar": 40 + }, + "kernels_config": { + "python": { + "delete_cmd_postfix": "", + "delete_cmd_prefix": "del ", + "library": "var_list.py", + "varRefreshCmd": "print(var_dic_list())" + }, + "r": { + "delete_cmd_postfix": ") ", + "delete_cmd_prefix": "rm(", + "library": "var_list.r", + "varRefreshCmd": "cat(var_dic_list()) " + } + }, + "types_to_exclude": [ + "module", + "function", + "builtin_function_or_method", + "instance", + "_Feature" + ], + "window_display": false + } + }, + "nbformat": 4, + "nbformat_minor": 5 +} diff --git a/hw14/code/parallel.py b/hw14/code/parallel.py new file mode 100644 index 0000000..05ae29d --- /dev/null +++ b/hw14/code/parallel.py @@ -0,0 +1,104 @@ +import argparse +import logging +from collections import Counter +from pathlib import Path +import sys + +import multiprocessing +from Bio import SeqIO + + +class SeqCounter: + + def __init__(self, path_to_file, threads): + ''' + Constructor + + :param path_to_file: str, path to FASTA file + :param threads: int, number of processes to run in parallel + ''' + + self.path_to_file = path_to_file + self.threads = threads + + def __str__(self): + ''' + Represents the class objects as a string + ''' + + return "Path to the file: {}\nNumber of threads: {}".format(self.path_to_file, self.threads) + + def count_letters(self, id_, seq): + ''' + Counts number of letters in a sequence and outputs these counts with sequence name + + :param id_: str, name of the FSTA sequence + :param seq: FASTA sequence + ''' + + counts_dict = dict(Counter(seq)) + counts_list = [k + '=' + str(v) for k, v in counts_dict.items()] + counts_str = ', '.join(counts_list) + print(f'{id_}:', counts_str) + + def output_results(self): + ''' + Reads FASTA file, counts letters in each sequence and outputs results + ''' + + processes = [] + records = SeqIO.parse(self.path_to_file, "fasta") + for record in records: + if len(processes) == self.threads: + for process in processes: + process.start() + for process in processes: + process.join() + processes = [] + processes.append(multiprocessing.Process(target=self.count_letters, args=(record.id, record.seq))) + if len(processes) > 0: + for process in processes: + process.start() + for process in processes: + process.join() + + +def SetLogger(logger_name): + ''' + Create custom logger and set its configuration + :param logger_name: name of created logger + ''' + + logger = logging.getLogger('argparse') + logger.setLevel(logging.INFO) + c_handler = logging.StreamHandler() + c_handler.setLevel(logging.INFO) + c_format = logging.Formatter('%(levelname)s: %(message)s') + c_handler.setFormatter(c_format) + logger.addHandler(c_handler) + + +if __name__ == '__main__': + + # argparse main parameters + parser = argparse.ArgumentParser(description='FASTA counter', epilog='Enjoy the program! :)', + formatter_class=argparse.RawTextHelpFormatter) + parser.add_argument('-i', '--input', type=str, help='Path to FASTA file', required=True, metavar='') + parser.add_argument('-t', '--threads', type=int, help='number of processes to run in parallel', + required=True, metavar='') + args = parser.parse_args() + + # create argparse logger + SetLogger(logger_name='argparse') + logger = logging.getLogger('argparse') + + # check whether input file exists + if not Path(args.input).exists(): + logger.warning('File {} does not exist!'.format(args.input)) + logger.info('Abort calculations. Specify correct path to file.') + sys.exit() + + seq_counter = SeqCounter(args.input, args.threads) + logger.info(f'Start calculations for {args.input} with n_jobs = {args.threads}') + seq_counter.output_results() + logger.info('End calculations.') diff --git a/hw14/requirements.txt b/hw14/requirements.txt new file mode 100644 index 0000000..9271104 --- /dev/null +++ b/hw14/requirements.txt @@ -0,0 +1,2 @@ +biopython==1.79 +multiprocess==0.70.12.2 From bea4f6afa9624b491f3305e1180458e26166593a Mon Sep 17 00:00:00 2001 From: ipsemenov <56733786+ipsemenov@users.noreply.github.com> Date: Sun, 1 May 2022 22:38:36 +0300 Subject: [PATCH 2/2] Create README.md --- hw14/README.md | 53 ++++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 53 insertions(+) create mode 100644 hw14/README.md diff --git a/hw14/README.md b/hw14/README.md new file mode 100644 index 0000000..e79cc59 --- /dev/null +++ b/hw14/README.md @@ -0,0 +1,53 @@ +# HW14 - Parallel Programming + +This homework is about parallel programming. +Here I realize a console utility which allows to read large FASTA files (500МB+) and count number of letters in each sequence. +This utility can be run in parallel to reduce time of program execution. + +## Data: +* Initial data (human genome) can be downloaded via [link](https://ftp.ncbi.nlm.nih.gov/refseq/H_sapiens/annotation/GRCh38_latest/refseq_identifiers/GRCh38_latest_genomic.fna.gz). +* Downloaded file should be uncompressed and moved into working directory: + + $ gunzip GRCh38_latest_genomic.fna.gz + +## Installation and Usage: +1. Install necessary libraries + + $ pip install -r requirements.txt + +2. To show information about program usage execute the following command: + + $ python parallel.py --help + +![image](https://user-images.githubusercontent.com/56733786/166161475-dbf0d745-26a4-4376-9806-23a3cf03d6f9.png) + +3. Run calculations and measure time in terminal: + + $ time python parallel.py --input INPUT --threads THREADS + +4. The same program can be launched in jupyter notebook - file parallel.ipynb + +## Results: +Program was launched with different number of cores and the following results were obtained: + +* 1 core: + +![image](https://user-images.githubusercontent.com/56733786/166161751-04f71ca4-e818-4be1-9d9f-bdd3c1ed936f.png) + +* 2 cores: + +![image](https://user-images.githubusercontent.com/56733786/166161767-72f67a58-218d-41af-8966-dbc440403740.png) + +* 4 cores: + +![image](https://user-images.githubusercontent.com/56733786/166161778-895b7fcb-cd00-49fb-9e53-af19992c5fd0.png) + + +* 8 cores: + +![image](https://user-images.githubusercontent.com/56733786/166161798-b7133afd-9960-4550-816e-36d5352ae535.png) + +Also time measurements can be found in parallel.ipynb + + +