From 28e3228fb2a2ee342926ac7a46183be493c34478 Mon Sep 17 00:00:00 2001 From: renae-r Date: Mon, 2 Feb 2026 17:48:54 -0600 Subject: [PATCH 1/7] dependency update --- poetry.lock | 42 ++++++++++++++++++++++++++++-------------- pyproject.toml | 4 ++-- 2 files changed, 30 insertions(+), 16 deletions(-) diff --git a/poetry.lock b/poetry.lock index 075a5b5..bb80171 100644 --- a/poetry.lock +++ b/poetry.lock @@ -12,6 +12,18 @@ files = [ {file = "alabaster-0.7.16.tar.gz", hash = "sha256:75a8b99c28a5dad50dd7f8ccdd447a121ddb3892da9e53d1ca5cca3106d58d65"}, ] +[[package]] +name = "annotated-doc" +version = "0.0.4" +description = "Document parameters, class attributes, return types, and variables inline, with Annotated." +category = "dev" +optional = false +python-versions = ">=3.8" +files = [ + {file = "annotated_doc-0.0.4-py3-none-any.whl", hash = "sha256:571ac1dc6991c450b25a9c2d84a3705e2ae7a53467b5d111c24fa8baabbed320"}, + {file = "annotated_doc-0.0.4.tar.gz", hash = "sha256:fbcda96e87e9c92ad167c2e53839e57503ecfda18804ea28102353485033faa4"}, +] + [[package]] name = "annotated-types" version = "0.7.0" @@ -456,24 +468,26 @@ test = ["pytest (>=6)"] [[package]] name = "fastapi" -version = "0.115.12" +version = "0.128.0" description = "FastAPI framework, high performance, easy to learn, fast to code, ready for production" category = "dev" optional = false -python-versions = ">=3.8" +python-versions = ">=3.9" files = [ - {file = "fastapi-0.115.12-py3-none-any.whl", hash = "sha256:e94613d6c05e27be7ffebdd6ea5f388112e5e430c8f7d6494a9d1d88d43e814d"}, - {file = "fastapi-0.115.12.tar.gz", hash = "sha256:1e2c2a2646905f9e83d32f04a3f86aff4a286669c6c950ca95b5fd68c2602681"}, + {file = "fastapi-0.128.0-py3-none-any.whl", hash = "sha256:aebd93f9716ee3b4f4fcfe13ffb7cf308d99c9f3ab5622d8877441072561582d"}, + {file = "fastapi-0.128.0.tar.gz", hash = "sha256:1cc179e1cef10a6be60ffe429f79b829dce99d8de32d7acb7e6c8dfdf7f2645a"}, ] [package.dependencies] -pydantic = ">=1.7.4,<1.8 || >1.8,<1.8.1 || >1.8.1,<2.0.0 || >2.0.0,<2.0.1 || >2.0.1,<2.1.0 || >2.1.0,<3.0.0" -starlette = ">=0.40.0,<0.47.0" +annotated-doc = ">=0.0.2" +pydantic = ">=2.7.0" +starlette = ">=0.40.0,<0.51.0" typing-extensions = ">=4.8.0" [package.extras] -all = ["email-validator (>=2.0.0)", "fastapi-cli[standard] (>=0.0.5)", "httpx (>=0.23.0)", "itsdangerous (>=1.1.0)", "jinja2 (>=3.1.5)", "orjson (>=3.2.1)", "pydantic-extra-types (>=2.0.0)", "pydantic-settings (>=2.0.0)", "python-multipart (>=0.0.18)", "pyyaml (>=5.3.1)", "ujson (>=4.0.1,!=4.0.2,!=4.1.0,!=4.2.0,!=4.3.0,!=5.0.0,!=5.1.0)", "uvicorn[standard] (>=0.12.0)"] -standard = ["email-validator (>=2.0.0)", "fastapi-cli[standard] (>=0.0.5)", "httpx (>=0.23.0)", "jinja2 (>=3.1.5)", "python-multipart (>=0.0.18)", "uvicorn[standard] (>=0.12.0)"] +all = ["email-validator (>=2.0.0)", "fastapi-cli[standard] (>=0.0.8)", "httpx (>=0.23.0,<1.0.0)", "itsdangerous (>=1.1.0)", "jinja2 (>=3.1.5)", "orjson (>=3.2.1)", "pydantic-extra-types (>=2.0.0)", "pydantic-settings (>=2.0.0)", "python-multipart (>=0.0.18)", "pyyaml (>=5.3.1)", "ujson (>=4.0.1,!=4.0.2,!=4.1.0,!=4.2.0,!=4.3.0,!=5.0.0,!=5.1.0)", "uvicorn[standard] (>=0.12.0)"] +standard = ["email-validator (>=2.0.0)", "fastapi-cli[standard] (>=0.0.8)", "httpx (>=0.23.0,<1.0.0)", "jinja2 (>=3.1.5)", "pydantic-extra-types (>=2.0.0)", "pydantic-settings (>=2.0.0)", "python-multipart (>=0.0.18)", "uvicorn[standard] (>=0.12.0)"] +standard-no-fastapi-cloud-cli = ["email-validator (>=2.0.0)", "fastapi-cli[standard-no-fastapi-cloud-cli] (>=0.0.8)", "httpx (>=0.23.0,<1.0.0)", "jinja2 (>=3.1.5)", "pydantic-extra-types (>=2.0.0)", "pydantic-settings (>=2.0.0)", "python-multipart (>=0.0.18)", "uvicorn[standard] (>=0.12.0)"] [[package]] name = "furo" @@ -1734,20 +1748,20 @@ files = [ [[package]] name = "requests" -version = "2.32.3" +version = "2.32.5" description = "Python HTTP for Humans." category = "main" optional = false -python-versions = ">=3.8" +python-versions = ">=3.9" files = [ - {file = "requests-2.32.3-py3-none-any.whl", hash = "sha256:70761cfe03c773ceb22aa2f671b4757976145175cdfca038c02654d061d6dcc6"}, - {file = "requests-2.32.3.tar.gz", hash = "sha256:55365417734eb18255590a9ff9eb97e9e1da868d4ccd6402399eaf68af20a760"}, + {file = "requests-2.32.5-py3-none-any.whl", hash = "sha256:2462f94637a34fd532264295e186976db0f5d453d1cdd31473c85a6a161affb6"}, + {file = "requests-2.32.5.tar.gz", hash = "sha256:dbba0bac56e100853db0ea71b82b4dfd5fe2bf6d3754a8893c3af500cec7d7cf"}, ] [package.dependencies] certifi = ">=2017.4.17" chardet = {version = ">=3.0.2,<6", optional = true, markers = "extra == \"use-chardet-on-py3\""} -charset-normalizer = ">=2,<4" +charset_normalizer = ">=2,<4" idna = ">=2.5,<4" urllib3 = ">=1.21.1,<3" @@ -2620,4 +2634,4 @@ docs = [] [metadata] lock-version = "2.0" python-versions = "^3.9" -content-hash = "0f7dfb98daffdd53ab296fe780eb6967f02b3c1408604ad8fd757ca54a3379ef" +content-hash = "3890b647edc68f64048d9301c586377a236dae4a60d5e6fe57f4731cb7dd2c66" diff --git a/pyproject.toml b/pyproject.toml index ec2bd4b..3419ea5 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -15,7 +15,7 @@ pandas = "^2.2.3" numpy = "^2.0.0" click = "^8.0.0" pyarrow = "^18.1.0" -requests = {extras = ["use_chardet_on_py3"], version = "^2.26.0"} +requests = {extras = ["use_chardet_on_py3"], version = "^2.32.5"} importlib-metadata = "^4.13.0" PyYAML = "^6.0.1" @@ -29,7 +29,7 @@ mypy = "^1.0.1" pytest = "^8.3.4" pytest-cov = "^4.0.0" python-dotenv = "^1.0.0" -fastapi = "^0.115.12" +fastapi = "^0.128.0" uvicorn = {extras = ["standard"], version = "^0.34.1"} pytest-recording = "^0.12.2" vcrpy = "^4.2.1" From ab71bf34b933c8577fed1260c30d586063ac7866 Mon Sep 17 00:00:00 2001 From: renae-r Date: Wed, 4 Feb 2026 11:54:48 -0600 Subject: [PATCH 2/7] support IPUMS DHS extracts --- docs/source/ipums_api/index.rst | 5 +++++ docs/source/ipums_api/ipums_api_micro/index.rst | 4 ++-- src/ipumspy/api/extract.py | 3 ++- 3 files changed, 9 insertions(+), 3 deletions(-) diff --git a/docs/source/ipums_api/index.rst b/docs/source/ipums_api/index.rst index 15405ec..6a6c43f 100644 --- a/docs/source/ipums_api/index.rst +++ b/docs/source/ipums_api/index.rst @@ -73,6 +73,11 @@ available features for all collections currently supported by the API: - ``mtus`` - **X** - + * - `IPUMS DHS `__ + - Microdata + - ``dhs`` + - **X** + - * - `IPUMS NHIS `__ - Microdata - ``nhis`` diff --git a/docs/source/ipums_api/ipums_api_micro/index.rst b/docs/source/ipums_api/ipums_api_micro/index.rst index dc0f9fe..366495c 100644 --- a/docs/source/ipums_api/ipums_api_micro/index.rst +++ b/docs/source/ipums_api/ipums_api_micro/index.rst @@ -95,7 +95,7 @@ The table below shows the available data structures and the IPUMS data collectio - all IPUMS microdata collections * - hierarchical - ``data_structure={"hierarchical": {}}`` - - all IPUMS microdata collections + - ``usa``, ``cps``, ``atus``, ``ahtus``, ``mtus``, ``nhis``, ``meps``, ``ipumsi`` * - rectangular on Activity - ``data_structure={"rectangular": {"on": "A"}}`` - ``atus``, ``ahtus``, ``mtus`` @@ -132,7 +132,7 @@ Extract Features ---------------- Certain features of a :class:`MicrodataExtract` can be -added or updated before an extract request is submitted. This section +added or updated before an extract request is submitted. Note that not all features are availale for every IPUMS data collection. For example, case selection is not a feature of IPUMS Time Use data and automatic inclusion of data quality flags is not a feature of IPUMS DHS. Details regarding available extract features for each IPUMS data collection can be found at the `IPUMS developer portal `_. This section demonstrates adding features to the following IPUMS CPS extract. .. code:: python diff --git a/src/ipumspy/api/extract.py b/src/ipumspy/api/extract.py index 9be95f2..2bb7c92 100644 --- a/src/ipumspy/api/extract.py +++ b/src/ipumspy/api/extract.py @@ -360,6 +360,7 @@ def _get_collection_type(collection: str) -> str: "mtus": "microdata", "nhis": "microdata", "meps": "microdata", + "dhs": "microdata", "nhgis": "aggregate_data", "ihgis": "aggregate_data", } @@ -680,7 +681,7 @@ def build(self) -> Dict[str, Any]: } # XXX shoehorn fix until server-side bug is fixed - if self.collection == "meps": + if self.collection == "meps" or self.collection == "dhs": for variable in built["variables"].keys(): built["variables"][variable].pop("attachedCharacteristics") From 8501555938828d8c02c8580ccdebe74b28825fcd Mon Sep 17 00:00:00 2001 From: renae-r Date: Wed, 4 Feb 2026 15:47:26 -0600 Subject: [PATCH 3/7] simplify getting extract rectypes --- src/ipumspy/readers.py | 21 +-- .../{meps_00020.dat.gz => meps_00045.dat.gz} | Bin 7022881 -> 7022881 bytes .../{meps_00020.xml => meps_00045.xml} | 165 ++++++++++++------ tests/test_readers.py | 16 +- 4 files changed, 123 insertions(+), 79 deletions(-) rename tests/fixtures/{meps_00020.dat.gz => meps_00045.dat.gz} (99%) rename tests/fixtures/{meps_00020.xml => meps_00045.xml} (95%) diff --git a/src/ipumspy/readers.py b/src/ipumspy/readers.py index e8fd24e..70d5c66 100644 --- a/src/ipumspy/readers.py +++ b/src/ipumspy/readers.py @@ -217,18 +217,13 @@ def _get_common_vars(ddi: ddi_definitions.Codebook, data_description: List): # these are delimited by spaces within the string attribute # this list would probably be a useful thing to have as a file-level attribute... - # XXX: this is to work around an issue with the Health Surveys DDI specifically. - # Revert to previous method of using the file_description rectypes once this - # DDI issue is fixed - rectype_desc = [desc for desc in data_description if desc.name == "RECTYPE"][0] - all_rectypes = rectype_desc.rectype.split(" ") common_vars = [ desc.name for desc in data_description - # if sorted(desc.rectype.split(" ")) == sorted(ddi.file_description.rectypes) - if sorted(desc.rectype.split(" ")) == sorted(all_rectypes) + if sorted(desc.rectype.split(" ")) == sorted(ddi.file_description.rectypes) + # if sorted(desc.rectype.split(" ")) == sorted(all_rectypes) ] - + return common_vars @@ -355,14 +350,8 @@ def read_hierarchical_microdata( else: df_dict = {} common_vars = _get_common_vars(ddi, data_description) - # XXX: this is to work around an issue with the Health Surveys DDI specifically. - # Revert to previous method of using the file_description rectypes once this - # DDI issue is fixed - rectype_desc = [desc for desc in data_description if desc.name == "RECTYPE"][0] - all_rectypes = rectype_desc.rectype.split(" ") - - # for rectype in ddi.file_description.rectypes: - for rectype in all_rectypes: + + for rectype in ddi.file_description.rectypes: rectype_vars = _get_rectype_vars( ddi, rectype, common_vars, data_description ) diff --git a/tests/fixtures/meps_00020.dat.gz b/tests/fixtures/meps_00045.dat.gz similarity index 99% rename from tests/fixtures/meps_00020.dat.gz rename to tests/fixtures/meps_00045.dat.gz index a0e4dbd16bd7880378dfb4f6e4add2a021d05801..80d420c5ce517c471d9919dbc6a3b633667f32e2 100644 GIT binary patch delta 344 zcmW;BMOFd;002=H1IJEm6cf9<1F*Zh>l7|#5QYn*isgOzuNtIMfjnqn=)JuberBRwB zBF)kwt6ZZ+lpz_G5gC;+8J7u}lqs2(8JU$inU@7wlqFe~ z6^Th)60$05vMw94DO<8FJF+W#vM&d6C`WQECvqxhaxNEgDOYkWH*za?axV|^C{OY% MFY+pH-@J#Se}N-eQUCw| delta 344 zcmXBJMN$F)06fE(cjqZw{FSF*@79ZWBAM~eywy+reg{%%M7}~9 z|9v8vk|hDjmK@2IpoAn((l=iUq)>{aSW2W+%A{N>q*AIREY(sYwNfYb(jbizktS)D z7HO3>iAuY4NT+{&HY%Y!`1lRV3d Nyvm!r|L_rx{Q*2$SW^H1 diff --git a/tests/fixtures/meps_00020.xml b/tests/fixtures/meps_00045.xml similarity index 95% rename from tests/fixtures/meps_00020.xml rename to tests/fixtures/meps_00045.xml index be29b51..282255b 100644 --- a/tests/fixtures/meps_00020.xml +++ b/tests/fixtures/meps_00045.xml @@ -1,19 +1,19 @@ - + Codebook for an for an IPUMS Health Surveys: Medical Expenditure Panel Survey Data Extract - DDI 2.5 metadata describing the extract file 'meps_00020.dat' - ddi2-27363a39-8e14-11e5-8c97-b82a72e0b782-meps_00020.dat-www.meps.ipums.org + DDI 2.5 metadata describing the extract file 'meps_00045.dat' + ddi2-27363a39-8e14-11e5-8c97-b82a72e0b782-meps_00045.dat-meps.ipums.org IPUMS IPUMS - June 24, 2024 + February 4, 2026 IPUMS, 50 Willey Hall, 225 - 19th Avenue South, Minneapolis, MN 55455 @@ -24,14 +24,14 @@ - User Extract meps_00020.dat + User Extract meps_00045.dat IPUMS IPUMS - June 24, 2024 + February 4, 2026 IPUMS, 50 Willey Hall, 225 - 19th Avenue South, Minneapolis, MN 55455 @@ -39,10 +39,10 @@ IPUMS MEPS - DOI:10.18128/D071.V2.3 + DOI:10.18128/D071.V2.5 - + @@ -77,7 +77,7 @@ By using these data, you signify your agreement to comply with the above-stated IPUMS Health Surveys: Medical Expenditure Panel Survey - meps_00020.dat + meps_00045.dat Microdata records + + Person Record + Round Record - - Event Record - - Prescribed Medicine Record - - - Condition Record + Prescribed medicine Record - - Person Record + + Rx medicines Record ISO-8859-1 data file @@ -230,113 +227,117 @@ In earlier versions of IPUMS MEPS, IPUMS MEPS staff created a slightly different - - 00 - - 01 - + 1 02 - + 2 03 - + 3 04 - + 4 05 - + 5 06 - + 6 07 - + 7 08 - + 8 09 - + 9 10 - + 10 11 - + 11 12 - + 12 13 - + 13 14 - + 14 15 - + 15 16 - + 16 17 - + 17 18 - + 18 19 - + 19 20 - + 20 21 - + 21 22 - + 22 23 - + 23 24 - + 24 25 - + 25 26 - + 26 + + + 27 + 27 + + + 28 + 28 Technical Variables -- PERSON @@ -497,13 +498,23 @@ For analysis, researchers need to use STRATAPLD in conjunction with PSUPLD to ac 2021 2021 + + 2022 + 2022 + + + 2023 + 2023 + Technical Variables -- PERSON Relative year 1 or 2 in panel - + 1 Relative year 1 @@ -755,6 +766,14 @@ For more information on the relationship between calendar year, panel, and round 26 26 + + 27 + 27 + + + 28 + 28 + Prescribed Medicine Variables -- PRESCRIBED MEDICINE @@ -794,7 +813,9 @@ See our user note for more details on how to join the different record types and Beginning in 2018, AHRQ modified the identifiers DUIDM and DUPERSIDM (which combines DUIDM with PIDM) on the original MEPS data files to append information about PANELM to the first two columns. AHRQ also added a 2-digit event type number beginning in 2018. MEPSLINKIDM is the same as LINKIDM for 2018 forward. -Event-Medication-Round Record Linking The event, medication-round, and medication-round fill records can be joined together by using the event-medication-round link records. MEPSLINKIDM is on the medication-round record and is the same as MEPSLINKIDK on the event-medication-round link record and MEPSLINKIDF on the medication-round fill record.Condition-Event Record Linking The medication-round and condition records can be joined together by using the condition-event link records. MEPSEVNTIDJ is on the condition-event link record and is the same as MEPSLINKIDM on the medication-round record.See our user note for more details on how to join the different record types and an overview of the event, medical conditions, and prescribed medicines variables, how those variables are offered through IPUMS MEPS, and general considerations to keep in mind when conducting analyses using these variables.]]> +Event-Medication-Round Record Linking The event, medication-round, and medication-round fill records can be joined together by using the event-medication-round link records. MEPSLINKIDM is on the medication-round record and is the same as MEPSLINKIDK on the event-medication-round link record and MEPSLINKIDF on the medication-round fill record.Condition-Event Record Linking The medication-round and condition records can be joined together by using the condition-event link records. MEPSEVNTIDJ is on the condition-event link record and is the same as MEPSLINKIDM on the medication-round record.See our user note for more details on how to join the different record types and an overview of the event, medical conditions, and prescribed medicines variables, how those variables are offered through IPUMS MEPS, and general considerations to keep in mind when conducting analyses using these variables. + +NOTE: Users should note that beginning in 2021, AHRQ discontinued the public use version of the RXLK file, which contains all K rectype variables needed for linking prescribed medicines and event records. AHRQ determined that the data in the RXLK file are not useful for studies of prescriber behavior because so few drugs link to prescribers. IPUMS MEPS continues to offer the RXLK variables for the 1996-2020 samples, allowing users to link prescribed medicines and event record data in these years. Users interested in the RXLK variables for the 2021-forward samples can refer to AHRQ's webpage on procedures to access restricted variables in a data center.]]> Prescribed Medicine Variables -- PRESCRIBED MEDICINE @@ -918,6 +939,14 @@ A complementary variable, YEAR indicates the survey year on the person record.]] 2021 2021 + + 2022 + 2022 + + + 2023 + 2023 + Technical Variables -- ROUND @@ -1061,6 +1090,14 @@ For more information on the relationship between calendar year, panel, and round 26 26 + + 27 + 27 + + + 28 + 28 + Technical Variables -- ROUND @@ -1258,6 +1295,14 @@ Persons with data for both calendar years in which their Panel participated have 2021 2021 + + 2022 + 2022 + + + 2023 + 2023 + Prescribed Medicine Fills Variables -- RX MEDICINES @@ -1400,6 +1445,14 @@ For more information on the relationship between calendar year, panel, and round 26 26 + + 27 + 27 + + + 28 + 28 + Prescribed Medicine Fills Variables -- RX MEDICINES @@ -1434,7 +1487,7 @@ Construction of DRUGID DRUGID uniquely identifies prescribed medicines acro Medication identifier (IPUMS generated) @@ -1499,6 +1552,8 @@ RXDRGNAM is on the prescribed medication-round fill record (or "medication-round IPUMS MEPS reports the universe for each variable based on a thorough review of the original MEPS documentation. Investigating the data may reveal cases that do not meet the stated universe. Users are encouraged to validate universes for their analyses. +In 2020 and 2021, AHRQ has issued a correction for a small number of records that were incorrectly assigned the code for "ALBUTEROL". These instead should have been assigned as "INSULIN GLAGINE". For more specific information, please see AHRQ documentaion for 2020 and 2021. IPUMS MEPS will correct this variable in the near future. + Multum Lexicon Variables Cerner Multum, Inc. develops the Multum Lexicon database that MEPS uses to classify drugs reported by respondents in the MEPS-HC. Each drug is assigned a Multum drug name (RXDRGNAM), a pregnancy category (PREGCAT), and to one or more therapeutic class, sub-class, and sub-sub-class designations (see MULTC1 for more information about the Multum Lexicon variables). @@ -1506,11 +1561,11 @@ Cerner Multum, Inc. develops the Multum Lexicon database that MEPS uses to class Users of the Multum Lexicon variables should cite Multum Lexicon, AHRQ, and IPUMS MEPS as the data sources.]]> +Additionally, diabetic equipment and supplies (see RXNAME) are also assigned a RXDRGNAM value of 8 – "Unknown-not ascertained" for all years.]]> Prescribed Medicine Fills Variables -- RX MEDICINES diff --git a/tests/test_readers.py b/tests/test_readers.py index 153fd5b..0e174a4 100644 --- a/tests/test_readers.py +++ b/tests/test_readers.py @@ -181,7 +181,7 @@ def _assert_meps_000019(data: pd.DataFrame): ).all() -def _assert_meps_00020_dict(data: pd.DataFrame): +def _assert_meps_00045_dict(data: pd.DataFrame): """Run all the checks for the data frame returned by our readers for hierarchical MEPS files""" # P df assert len(data) == 34655 @@ -282,7 +282,7 @@ def _assert_meps_00020_dict(data: pd.DataFrame): ).all() -def _assert_meps_00020_df(data: pd.DataFrame): +def _assert_meps_00045_df(data: pd.DataFrame): """Run all the checks for the data frame returned by our readers for hierarchical files""" assert len(data) == 595853 assert len(data.columns) == 51 @@ -524,10 +524,10 @@ def test_can_read_hierarchical_df_dat_gz(fixtures_path: Path): _assert_atus_00035_df - ddi = readers.read_ipums_ddi(fixtures_path / "meps_00020.xml") - data = readers.read_hierarchical_microdata(ddi, fixtures_path / "meps_00020.dat.gz") + ddi = readers.read_ipums_ddi(fixtures_path / "meps_00045.xml") + data = readers.read_hierarchical_microdata(ddi, fixtures_path / "meps_00045.dat.gz") - _assert_meps_00020_df + _assert_meps_00045_df def test_can_read_hierarchical_dict_dat_gz(fixtures_path: Path): @@ -549,12 +549,12 @@ def test_can_read_hierarchical_dict_dat_gz(fixtures_path: Path): _assert_atus_00035_dict - ddi = readers.read_ipums_ddi(fixtures_path / "meps_00020.xml") + ddi = readers.read_ipums_ddi(fixtures_path / "meps_00045.xml") data = readers.read_hierarchical_microdata( - ddi, fixtures_path / "meps_00020.dat.gz", as_dict=True + ddi, fixtures_path / "meps_00045.dat.gz", as_dict=True ) - _assert_meps_00020_dict + _assert_meps_00045_dict def test_can_read_rectangular_dat_gz(fixtures_path: Path): From aa4fc145c60293368a6c8392e67801d5044405b2 Mon Sep 17 00:00:00 2001 From: renae-r Date: Wed, 4 Feb 2026 15:57:59 -0600 Subject: [PATCH 4/7] update dependencies; version bump --- .github/workflows/main.yml | 2 +- poetry.lock | 3097 ++++++++++++++++++------------------ pyproject.toml | 18 +- 3 files changed, 1580 insertions(+), 1537 deletions(-) diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index c5839fc..53dd779 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -13,7 +13,7 @@ jobs: strategy: fail-fast: true matrix: - python-version: ["3.9", "3.10", "3.11", "3.12"] + python-version: ["3.10", "3.11", "3.12", "3.13", "3.14"] steps: - uses: actions/checkout@v4 diff --git a/poetry.lock b/poetry.lock index bb80171..6c01402 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,12 +1,12 @@ -# This file is automatically @generated by Poetry 1.4.0 and should not be changed by hand. +# This file is automatically @generated by Poetry 2.3.2 and should not be changed by hand. [[package]] name = "alabaster" version = "0.7.16" description = "A light, configurable Sphinx theme" -category = "dev" optional = false python-versions = ">=3.9" +groups = ["docs"] files = [ {file = "alabaster-0.7.16-py3-none-any.whl", hash = "sha256:b46733c07dce03ae4e150330b975c75737fa60f0a7c591b6c8bf4928a28e2c92"}, {file = "alabaster-0.7.16.tar.gz", hash = "sha256:75a8b99c28a5dad50dd7f8ccdd447a121ddb3892da9e53d1ca5cca3106d58d65"}, @@ -16,9 +16,9 @@ files = [ name = "annotated-doc" version = "0.0.4" description = "Document parameters, class attributes, return types, and variables inline, with Annotated." -category = "dev" optional = false python-versions = ">=3.8" +groups = ["test"] files = [ {file = "annotated_doc-0.0.4-py3-none-any.whl", hash = "sha256:571ac1dc6991c450b25a9c2d84a3705e2ae7a53467b5d111c24fa8baabbed320"}, {file = "annotated_doc-0.0.4.tar.gz", hash = "sha256:fbcda96e87e9c92ad167c2e53839e57503ecfda18804ea28102353485033faa4"}, @@ -28,9 +28,9 @@ files = [ name = "annotated-types" version = "0.7.0" description = "Reusable constraint types to use with typing.Annotated" -category = "dev" optional = false python-versions = ">=3.8" +groups = ["test"] files = [ {file = "annotated_types-0.7.0-py3-none-any.whl", hash = "sha256:1f02e8b43a8fbbc3f3e0d4f0f4bfc8131bcb4eebe8849b8e5c773f3a1c582a53"}, {file = "annotated_types-0.7.0.tar.gz", hash = "sha256:aff07c09a53a08bc8cfccb9c85b05f1aa9a2a6f23728d790723543408344ce89"}, @@ -38,34 +38,31 @@ files = [ [[package]] name = "anyio" -version = "4.9.0" -description = "High level compatibility layer for multiple asynchronous event loop implementations" -category = "dev" +version = "4.12.1" +description = "High-level concurrency and networking framework on top of asyncio or Trio" optional = false python-versions = ">=3.9" +groups = ["test"] files = [ - {file = "anyio-4.9.0-py3-none-any.whl", hash = "sha256:9f76d541cad6e36af7beb62e978876f3b41e3e04f2c1fbf0884604c0a9c4d93c"}, - {file = "anyio-4.9.0.tar.gz", hash = "sha256:673c0c244e15788651a4ff38710fea9675823028a6f08a5eda409e0c9840a028"}, + {file = "anyio-4.12.1-py3-none-any.whl", hash = "sha256:d405828884fc140aa80a3c667b8beed277f1dfedec42ba031bd6ac3db606ab6c"}, + {file = "anyio-4.12.1.tar.gz", hash = "sha256:41cfcc3a4c85d3f05c932da7c26d0201ac36f72abd4435ba90d0464a3ffed703"}, ] [package.dependencies] exceptiongroup = {version = ">=1.0.2", markers = "python_version < \"3.11\""} idna = ">=2.8" -sniffio = ">=1.1" typing_extensions = {version = ">=4.5", markers = "python_version < \"3.13\""} [package.extras] -doc = ["Sphinx (>=8.2,<9.0)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx_rtd_theme"] -test = ["anyio[trio]", "blockbuster (>=1.5.23)", "coverage[toml] (>=7)", "exceptiongroup (>=1.2.0)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "trustme", "truststore (>=0.9.1)", "uvloop (>=0.21)"] -trio = ["trio (>=0.26.1)"] +trio = ["trio (>=0.31.0) ; 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Wilson ", "Renae Rodgers "] @@ -10,29 +10,29 @@ packages = [ ] [tool.poetry.dependencies] -python = "^3.9" +python = "^3.10" pandas = "^2.2.3" numpy = "^2.0.0" click = "^8.0.0" -pyarrow = "^18.1.0" +pyarrow = "^23.0.0" requests = {extras = ["use_chardet_on_py3"], version = "^2.32.5"} importlib-metadata = "^4.13.0" PyYAML = "^6.0.1" -[tool.poetry.dev-dependencies] +[tool.poetry.group.dev.dependencies] black = "^24.4.0" pylint = "^2.7.4" isort = "^5.8.0" mypy = "^1.0.1" [tool.poetry.group.test.dependencies] -pytest = "^8.3.4" +pytest = "^9.0.0" pytest-cov = "^4.0.0" python-dotenv = "^1.0.0" -fastapi = "^0.128.0" -uvicorn = {extras = ["standard"], version = "^0.34.1"} -pytest-recording = "^0.12.2" -vcrpy = "^4.2.1" +fastapi = "^0.128.1" +uvicorn = {extras = ["standard"], version = "^0.40.0"} +pytest-recording = "^0.13.4" +vcrpy = "^8.0.0" [tool.poetry.group.docs] optional=true From 96537e2e7da6135b0fb1a78815dfa727578f60ce Mon Sep 17 00:00:00 2001 From: renae-r Date: Wed, 4 Feb 2026 15:58:09 -0600 Subject: [PATCH 5/7] doc updates --- docs/source/change-log.rst | 12 ++++++++++++ docs/source/getting_started.rst | 2 +- 2 files changed, 13 insertions(+), 1 deletion(-) diff --git a/docs/source/change-log.rst b/docs/source/change-log.rst index abdcf2d..3a9a4dd 100644 --- a/docs/source/change-log.rst +++ b/docs/source/change-log.rst @@ -11,6 +11,18 @@ This project adheres to `Semantic Versioning`_. .. _Semantic Versioning: http://semver.org/ +0.8.0 +----- +2026-02-? + +* New Features + + * Support for IPUMS DHS extract API + +* Breaking Changes + + * Dropped support for Python 3.9 + 0.7.0 ----- 2025-06-09 diff --git a/docs/source/getting_started.rst b/docs/source/getting_started.rst index ee88020..e4535a0 100644 --- a/docs/source/getting_started.rst +++ b/docs/source/getting_started.rst @@ -8,7 +8,7 @@ Getting Started Installation ------------ -This package requires that you have at least Python 3.9 installed. +This package requires that you have at least Python 3.10 installed. Install with ``pip``: From 57f7e64dc45d9428e8ed9b7df8795b2cdb53da6c Mon Sep 17 00:00:00 2001 From: renae-r Date: Wed, 4 Feb 2026 16:06:15 -0600 Subject: [PATCH 6/7] :black_heart: --- src/ipumspy/readers.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/ipumspy/readers.py b/src/ipumspy/readers.py index 70d5c66..f943375 100644 --- a/src/ipumspy/readers.py +++ b/src/ipumspy/readers.py @@ -223,7 +223,7 @@ def _get_common_vars(ddi: ddi_definitions.Codebook, data_description: List): if sorted(desc.rectype.split(" ")) == sorted(ddi.file_description.rectypes) # if sorted(desc.rectype.split(" ")) == sorted(all_rectypes) ] - + return common_vars From e7d2cfc85bc6eaa6a7abc0ba68880885ba3ad494 Mon Sep 17 00:00:00 2001 From: renae-r Date: Mon, 13 Apr 2026 13:35:44 -0500 Subject: [PATCH 7/7] update python version for coverage test --- .github/workflows/coverage.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/coverage.yml b/.github/workflows/coverage.yml index 5a8fe64..d9e381b 100644 --- a/.github/workflows/coverage.yml +++ b/.github/workflows/coverage.yml @@ -17,7 +17,7 @@ jobs: - name: Setup Python uses: actions/setup-python@v5 with: - python-version: 3.9 + python-version: 3.11 - name: Install poetry uses: snok/install-poetry@v1