add research-map

Author: kadubon

README.md

@@ -3,11 +3,12 @@
 This repository hosts the GitHub Pages research hub for K. Takahashi, with static, machine-readable entry points for original work in AI safety, cognitive security, no-meta governance, and auditable autonomous intelligence.
 It is designed for human readers, search engines, AI crawlers, and LLM summarizers to discover concept pages, DOI-linked papers, and structured research metadata without requiring dynamic rendering.
 The site emphasizes semantic HTML, DOI-based scholarly destinations, crawler-friendly navigation, and scientific explanatory pages for topics including self-concealing information, observer-modifying dynamics, and observable-only governance.
-It also includes cluster landing pages for auditability and replay, long-running agents and multi-agent reasoning, provenance-oriented semantic infrastructure, earlier self-improving intelligence foundations, theory translation and comparative mathematics, and propagation or front-dynamics persistence models.
+It also includes a site-wide research map above the cluster pages, plus cluster landing pages for auditability and replay, long-running agents and multi-agent reasoning, provenance-oriented semantic infrastructure, earlier self-improving intelligence foundations, theory translation and comparative mathematics, and propagation or front-dynamics persistence models.
 
 ## Canonical URLs
 
 - Home: https://kadubon.github.io/github.io/
+- Research Map: https://kadubon.github.io/github.io/research-map.html
 - Self-Concealing Information / Observer-Modifying Dynamics: https://kadubon.github.io/github.io/self-concealing-information-observer-modifying-dynamics.html
 - Auditability / Replay / Fail-Closed AI Systems: https://kadubon.github.io/github.io/auditability-replay-fail-closed-ai.html
 - Long-Running Agents / Memory Limits / Multi-Agent Reasoning: https://kadubon.github.io/github.io/long-running-agents-memory-multi-agent-reasoning.html
@@ -25,6 +26,7 @@ It also includes cluster landing pages for auditability and replay, long-running
 ## Discoverability and Machine Readability
 
 - Schema.org JSON-LD is embedded on key pages (`ProfilePage`, `Person`, `CollectionPage`, `ScholarlyArticle`, `TechArticle`, `CreativeWork`).
+- `research-map.html` provides a site-wide synthesis layer with pillar structure, dependency arrows, stable anchors, and audience-specific read paths.
 - `no-meta-observable-index.html` provides a visible YAML canonical field guide for the no-meta / observable-only research series.
 - Cluster landing pages provide visible YAML and structured concept maps for major local research groupings.
 - Semantic HTML5 tags provide clear document structure for parsers and crawlers.
@@ -40,6 +42,7 @@ It also includes cluster landing pages for auditability and replay, long-running
 ## Main Pages
 
 - `index.html`: profile page and research program overview
+- `research-map.html`: site-wide synthesis page mapping the theory stack, cluster dependencies, canonical entry points, and audience read paths
 - `self-concealing-information-observer-modifying-dynamics.html`: concept entry page for self-concealing information, observer-modifying dynamics, internal blindness, external anchors, and delayed audit
 - `auditability-replay-fail-closed-ai.html`: cluster landing page for AI auditability, deterministic replay, fail-closed verification, audit gates, and lifecycle certification
 - `long-running-agents-memory-multi-agent-reasoning.html`: cluster landing page for long-running agents, bounded memory, finite context, multi-agent reasoning, and evaluation decay

auditability-replay-fail-closed-ai.html

@@ -351,6 +351,7 @@
         <nav aria-label="Primary">
             <ul>
                 <li><a href="https://kadubon.github.io/github.io/">Home</a></li>
+                <li><a href="https://kadubon.github.io/github.io/research-map.html">Research Map</a></li>
                 <li><a href="https://kadubon.github.io/github.io/works.html">Works</a></li>
                 <li><a href="https://kadubon.github.io/github.io/no-meta-observable-index.html">No-Meta Index</a></li>
             </ul>

index.html

@@ -97,12 +97,26 @@
             "@id": "https://kadubon.github.io/github.io/#person"
           },
           "significantLink": [
+            "https://kadubon.github.io/github.io/research-map.html",
             "https://kadubon.github.io/github.io/works.html",
             "https://kadubon.github.io/github.io/no-meta-observable-index.html",
             "https://kadubon.github.io/github.io/feed.xml",
             "https://kadubon.github.io/github.io/CITATION.cff"
           ]
         },
+        {
+          "@type": "CollectionPage",
+          "@id": "https://kadubon.github.io/github.io/research-map.html#research-map-page",
+          "url": "https://kadubon.github.io/github.io/research-map.html",
+          "name": "Research Map - K. Takahashi",
+          "description": "Site-wide synthesis page mapping the research stack, dependency arrows, and canonical entry points across the site.",
+          "about": {
+            "@id": "https://kadubon.github.io/github.io/#person"
+          },
+          "isPartOf": {
+            "@id": "https://kadubon.github.io/github.io/#website"
+          }
+        },
         {
           "@type": "CollectionPage",
           "@id": "https://kadubon.github.io/github.io/works.html#works-page",
@@ -153,6 +167,7 @@ <h1>K. Takahashi</h1>
         <nav aria-label="Primary">
             <ul>
                 <li><a href="https://kadubon.github.io/github.io/">Home</a></li>
+                <li><a href="https://kadubon.github.io/github.io/research-map.html">Research Map</a></li>
                 <li><a href="https://kadubon.github.io/github.io/works.html">Works</a></li>
                 <li><a href="https://kadubon.github.io/github.io/no-meta-observable-index.html">No-Meta Index</a></li>
             </ul>
@@ -163,6 +178,7 @@ <h1>K. Takahashi</h1>
         <section id="overview" class="container">
             <h2>Research Hub Overview</h2>
             <p>This site is the canonical entry point for K. Takahashi's research program on safe and auditable autonomous intelligence.</p>
+            <p><a href="https://kadubon.github.io/github.io/research-map.html">research-map.html</a> is the site-wide synthesis layer for readers or parsers who need the dependency structure across the major clusters before moving into the local field-guide pages.</p>
             <p>It is optimized for both human readers and automated systems through semantic HTML, Schema.org JSON-LD, DOI-linked publications, RSS updates, and crawlable navigation paths.</p>
         </section>
 
@@ -183,6 +199,7 @@ <h2>Core Research Areas</h2>
         <section id="machine-entry-points" class="container">
             <h2>Machine-Readable Endpoints</h2>
             <ul>
+                <li><a href="https://kadubon.github.io/github.io/research-map.html">research-map.html</a>: site-wide synthesis page with stable anchors, visible structure, and cross-cluster dependency map</li>
                 <li><a href="https://kadubon.github.io/github.io/no-meta-observable-index.html">no-meta-observable-index.html</a>: canonical YAML field guide for the no-meta / observable-only series</li>
                 <li><a href="https://kadubon.github.io/github.io/works.html">works.html</a>: full publication list with structured metadata and DOI links</li>
                 <li><a href="https://kadubon.github.io/github.io/feed.xml">feed.xml</a>: RSS feed for update polling</li>
@@ -195,6 +212,7 @@ <h2>Machine-Readable Endpoints</h2>
         <section id="entry-points" class="container">
             <h2>Additional Entry Points</h2>
             <ul>
+                <li><a href="https://kadubon.github.io/github.io/research-map.html">Research Map</a></li>
                 <li><a href="https://kadubon.github.io/github.io/no-meta-observable-index.html">No-Meta / Observable-Only Series Index</a></li>
                 <li><a href="https://kadubon.github.io/github.io/self-concealing-information-observer-modifying-dynamics.html">Self-Concealing Information / Observer-Modifying Dynamics</a></li>
                 <li><a href="https://kadubon.github.io/github.io/auditability-replay-fail-closed-ai.html">Auditability / Replay / Fail-Closed AI Systems</a></li>

llms-full.txt

@@ -16,19 +16,20 @@ The primary machine-readable publication corpus is `works.html`, where each item
 
 ## Preferred Retrieval Order for AI Agents
 
-1. [No-Meta / Observable-Only Series Index](https://kadubon.github.io/github.io/no-meta-observable-index.html): canonical YAML field guide for the no-meta / observable-only series, including paper roles and experiment-repository mappings.
-2. Thematic landing pages:
+1. [Research Map](https://kadubon.github.io/github.io/research-map.html): site-wide synthesis page with the stack-level dependency map and canonical entry points.
+2. [No-Meta / Observable-Only Series Index](https://kadubon.github.io/github.io/no-meta-observable-index.html): canonical YAML field guide for the no-meta / observable-only series, including paper roles and experiment-repository mappings.
+3. Thematic landing pages:
    - [Self-Concealing Information / Observer-Modifying Dynamics](https://kadubon.github.io/github.io/self-concealing-information-observer-modifying-dynamics.html)
    - [Auditability / Replay / Fail-Closed AI Systems](https://kadubon.github.io/github.io/auditability-replay-fail-closed-ai.html)
    - [Long-Running Agents / Memory Limits / Multi-Agent Reasoning](https://kadubon.github.io/github.io/long-running-agents-memory-multi-agent-reasoning.html)
    - [Provenance / Records / Semantic Interfaces](https://kadubon.github.io/github.io/provenance-records-semantic-interfaces.html)
    - [Self-Improving Intelligence Foundations](https://kadubon.github.io/github.io/self-improving-intelligence-foundations.html)
    - [Theory Translation / Comparative Mathematics](https://kadubon.github.io/github.io/theory-translation-comparative-mathematics.html)
    - [Propagation / Front Dynamics / Persistence](https://kadubon.github.io/github.io/propagation-front-dynamics-persistence.html)
-3. [Works](https://kadubon.github.io/github.io/works.html): complete structured publication index.
-4. DOI links from Works: source records and downloadable artifacts (mostly Zenodo).
-5. [RSS Feed](https://kadubon.github.io/github.io/feed.xml): incremental update detection.
-6. [Home](https://kadubon.github.io/github.io/): authoritative program overview and endpoint map.
+4. [Works](https://kadubon.github.io/github.io/works.html): complete structured publication index.
+5. DOI links from Works: source records and downloadable artifacts (mostly Zenodo).
+6. [RSS Feed](https://kadubon.github.io/github.io/feed.xml): incremental update detection.
+7. [Home](https://kadubon.github.io/github.io/): authoritative program overview and endpoint map.
 
 ## Research Program Summary
 
@@ -102,6 +103,7 @@ The primary machine-readable publication corpus is `works.html`, where each item
 ## Core Pages and Functions
 
 - [Home](https://kadubon.github.io/github.io/): profile and high-level overview.
+- [Research Map](https://kadubon.github.io/github.io/research-map.html): site-wide synthesis page mapping pillars, dependency arrows, read paths, and top-level entry points.
 - [Self-Concealing Information / Observer-Modifying Dynamics](https://kadubon.github.io/github.io/self-concealing-information-observer-modifying-dynamics.html): cluster landing page for self-concealing information, observer-modifying dynamics, delayed audit, provenance-adjacent comparison, and related papers.
 - [Auditability / Replay / Fail-Closed AI Systems](https://kadubon.github.io/github.io/auditability-replay-fail-closed-ai.html): cluster landing page for AI auditability, deterministic replay, fail-closed verification, audit gates, lifecycle certification, and deployment governance.
 - [Long-Running Agents / Memory Limits / Multi-Agent Reasoning](https://kadubon.github.io/github.io/long-running-agents-memory-multi-agent-reasoning.html): cluster landing page for long-running agents, bounded memory, finite context, multi-agent inference, recursive self-improvement stability, and benchmark validity decay.
@@ -114,6 +116,7 @@ The primary machine-readable publication corpus is `works.html`, where each item
 
 ## Machine-Readable and Citation Endpoints
 
+- [Research Map](https://kadubon.github.io/github.io/research-map.html): site-wide synthesis page with stable anchors and cross-cluster dependency structure.
 - [Self-Concealing Cluster Page](https://kadubon.github.io/github.io/self-concealing-information-observer-modifying-dynamics.html): visible YAML and cluster navigation for observer-modifying and delayed-audit topics.
 - [Auditability Cluster Page](https://kadubon.github.io/github.io/auditability-replay-fail-closed-ai.html): visible YAML and cluster navigation for auditability, replay, and fail-closed AI systems.
 - [Long-Running Agents Cluster Page](https://kadubon.github.io/github.io/long-running-agents-memory-multi-agent-reasoning.html): visible YAML and cluster navigation for long-running agents, finite context, and multi-agent reasoning.

llms.txt

@@ -8,6 +8,7 @@ Primary publication records are listed on the Works page and link to Zenodo DOI
 ## Core Pages
 
 - [Home](https://kadubon.github.io/github.io/): profile, research overview, and canonical entry point.
+- [Research Map](https://kadubon.github.io/github.io/research-map.html): site-wide synthesis page and dependency map above the thematic cluster pages.
 - [Self-Concealing Information / Observer-Modifying Dynamics](https://kadubon.github.io/github.io/self-concealing-information-observer-modifying-dynamics.html): cluster landing page for self-concealing information, observer-modifying dynamics, delayed audit, and adjacent provenance or cognitive-drift papers.
 - [Auditability / Replay / Fail-Closed AI Systems](https://kadubon.github.io/github.io/auditability-replay-fail-closed-ai.html): cluster landing page for auditability, deterministic replay, fail-closed verification, audit gates, certification, and deployment safety.
 - [Long-Running Agents / Memory Limits / Multi-Agent Reasoning](https://kadubon.github.io/github.io/long-running-agents-memory-multi-agent-reasoning.html): cluster landing page for long-running agents, bounded memory, finite context, multi-agent inference, recursive self-improvement stability, and benchmark decay.
@@ -20,6 +21,7 @@ Primary publication records are listed on the Works page and link to Zenodo DOI
 
 ## Machine-Readable Endpoints
 
+- [Research Map](https://kadubon.github.io/github.io/research-map.html): site-wide synthesis page with stable anchors and cross-cluster dependency structure.
 - [Self-Concealing Cluster Page](https://kadubon.github.io/github.io/self-concealing-information-observer-modifying-dynamics.html): visible YAML and cluster navigation for observer-modifying and delayed-audit topics.
 - [Auditability Cluster Page](https://kadubon.github.io/github.io/auditability-replay-fail-closed-ai.html): visible YAML and cluster navigation for auditability, replay, and fail-closed AI systems.
 - [Long-Running Agents Cluster Page](https://kadubon.github.io/github.io/long-running-agents-memory-multi-agent-reasoning.html): visible YAML and cluster navigation for finite-context agents and multi-agent reasoning.

long-running-agents-memory-multi-agent-reasoning.html

@@ -325,6 +325,7 @@
         <nav aria-label="Primary">
             <ul>
                 <li><a href="https://kadubon.github.io/github.io/">Home</a></li>
+                <li><a href="https://kadubon.github.io/github.io/research-map.html">Research Map</a></li>
                 <li><a href="https://kadubon.github.io/github.io/works.html">Works</a></li>
                 <li><a href="https://kadubon.github.io/github.io/no-meta-observable-index.html">No-Meta Index</a></li>
             </ul>

no-meta-observable-index.html

@@ -35,6 +35,7 @@ <h1>K. Takahashi</h1>
         <nav aria-label="Primary">
             <ul>
                 <li><a href="https://kadubon.github.io/github.io/">Home</a></li>
+                <li><a href="https://kadubon.github.io/github.io/research-map.html">Research Map</a></li>
                 <li><a href="https://kadubon.github.io/github.io/works.html">Works</a></li>
                 <li><a href="https://kadubon.github.io/github.io/no-meta-observable-index.html">No-Meta Index</a></li>
             </ul>
@@ -45,6 +46,7 @@ <h1>K. Takahashi</h1>
         <section class="container">
             <p class="index-note">This page is the canonical field guide for the no-meta / observable-only research series on this site.</p>
             <p class="index-note">It indexes the core papers, terms, read paths, and adjacent machine-readable artifacts used for navigation.</p>
+            <p class="index-note">For the full site-wide dependency map across the other clusters, use <a href="https://kadubon.github.io/github.io/research-map.html">research-map.html</a>.</p>
             <p class="index-note">Use the YAML below as the primary source for parsing this series and locating the underlying papers.</p>
             <!-- Visible YAML below is the canonical navigation index for human readers and AI agents. -->
             <pre id="canonical-series-yaml" class="yaml-index" data-format="yaml" data-machine-readable="primary" data-series-id="no-meta-observable-only-series" data-last-updated="2026-04-16" aria-label="Canonical YAML index for the no-meta observable-only series">series:

propagation-front-dynamics-persistence.html

@@ -298,6 +298,7 @@ <h1 class="site-title">K. Takahashi</h1>
         <nav aria-label="Primary">
             <ul>
                 <li><a href="https://kadubon.github.io/github.io/">Home</a></li>
+                <li><a href="https://kadubon.github.io/github.io/research-map.html">Research Map</a></li>
                 <li><a href="https://kadubon.github.io/github.io/works.html">Works</a></li>
                 <li><a href="https://kadubon.github.io/github.io/no-meta-observable-index.html">No-Meta Index</a></li>
             </ul>

provenance-records-semantic-interfaces.html

@@ -336,6 +336,7 @@
         <nav aria-label="Primary">
             <ul>
                 <li><a href="https://kadubon.github.io/github.io/">Home</a></li>
+                <li><a href="https://kadubon.github.io/github.io/research-map.html">Research Map</a></li>
                 <li><a href="https://kadubon.github.io/github.io/works.html">Works</a></li>
                 <li><a href="https://kadubon.github.io/github.io/no-meta-observable-index.html">No-Meta Index</a></li>
             </ul>