Merge remote-tracking branch 'jwpeterson/citations' into devel

Author: jwpeterson

doc/citations/preprints.bib

@@ -1,5 +1,65 @@
 % Preprints
 
+% MOOSE
+% "An open-source platform, ... (MOOSE), is used to as an enable [sic] tool ..."
+@Article{XZhou_2025,
+  author  = {Xiaoming Zhou and Yongchao Liu and Manthar Ali and Min He},
+  title   = {A multilevel-multiphysics modeling and simulation approach for multichip electronics},
+  journal = {Applied Thermal Engineering},
+  month   = jan,
+  year    = 2025,
+  pages   = {125738 (xx pages)},
+  note    = {\url{https://doi.org/10.1016/j.applthermaleng.2025.125738}}
+}
+
+% MOOSE
+% "In the final step, the trained DNN acts as a surrogate model within the FEM framework in ... (MOOSE)."
+% https://www.christianpeco.com/uploads/2/3/6/1/23617100/a_bio-lattice_deep_learning_framework_for_modeling_discrete_biological_materials.pdf
+@Article{Kumar_2025,
+  author  = {Manik Kumar and Nilay Upadhyay and Shishir Barai and Wesley F. Reinhart and Christian Peco},
+  title   = {A bio-lattice deep learning framework for modeling discrete biological materials},
+  journal = {Journal of the Mechanical Behavior of Biomedical Materials},
+  month   = jan,
+  year    = 2025,
+  pages   = {106900 (xx pages)},
+  note    = {\url{https://doi.org/10.1016/j.jmbbm.2025.106900}, Preprint: \url{https://tinyurl.com/57atznp8}}
+}
+
+% MOOSE
+% "Complex arithmetic is not directly implemented in most computational simulation software, including the one employed here, ... (MOOSE, ...)"
+@Article{Shah_2025,
+  author  = {Haritya Shah and Murthy Guddati},
+  title   = {{Towards linking histological changes to liver viscoelasticity: A hybrid analytical-computational micromechanics approach}},
+  journal = {Physics in Medicine \& Biology},
+  month   = jan,
+  year    = 2025,
+  pages   = {xx (19 pages)},
+  note    = {\url{https://doi.org/10.1088/1361-6560/adaad3}, ArXiv e-print: \url{https://arxiv.org/abs/2411.13530}}
+}
+
+% Maybe MOOSE/BISON
+% Requested full-text on ResearchGate
+@Article{Montoya_2025,
+  author  = {Katherine I. Montoya and Erik G. Herbert and Danny P. Schappel and Tyler J. Gerczak and Christian M. Petrie and Andrew T. Nelson and Tyler J. Gerczak},
+  title   = {{Micromechanical response of SiC-OPyC layers in TRISO fuel particles}},
+  journal = {Journal of Nuclear Materials},
+  month   = jan,
+  year    = 2025,
+  pages   = {155654 (xx pages)},
+  note    = {\url{https://doi.org/10.1016/j.jnucmat.2025.155654}}
+}
+
+% MOOSE
+% This is a conference paper from PHYSOR 2024
+@Article{Jaradat_2024c,
+  author  = {Mustafa K. Jaradat and Sebastian Schunert and Frederick N. Gleicher and Mark D. DeHart},
+  title   = {{Temperature prediction for the Sirius-2c nuclear propulsion fuel experiment conducted at the TREAT facility}},
+  journal = {Nuclear Science and Engineering},
+  month   = jan,
+  year    = 2025,
+  note    = {\url{https://doi.org/10.1080/00295639.2024.2445470}, Tech.~Report INL/CON-24-76205, \url{https://www.osti.gov/biblio/2341470}}
+}
+
 % MOOSE
 @Article{Martin_2025,
   author  = {Nicolas Martin and Lise Charlot and Gerhard Strydom},
@@ -21,17 +81,6 @@ @Article{Mostafavi_2025
   note    = {\url{https://doi.org/10.1016/j.jcp.2025.113755}}
 }
 
-% MOOSE/BISON
-@Article{Rizk_2025,
-  author  = {Jason T. Rizk and Michael W. D. Cooper and Pierre-Cl{\'{e}}ment A. Simon and Anton J. Schneider and David A. Andersson and Stephen R. Novascone and Christopher Matthews},
-  title   = {Mechanistic nuclear fuel performance modeling of uranium nitride},
-  journal = {Journal of Nuclear Materials},
-  month   = jan,
-  year    = 2025,
-  pages   = {155604 (xx pages)},
-  note    = {\url{https://doi.org/10.1016/j.jnucmat.2024.155604}}
-}
-
 % Maybe MOOSE
 % Requested full-text on ResearchGate
 @Article{Jain_2025,

doc/citations/twentyfive.bib

@@ -1,3 +1,43 @@
+% MOOSE/BISON
+% "The SIFGRS model in BISON ... is utilized here to provide the intra- and inter-granular fission gas bubble behavior ..."
+@Article{Rizk_2025,
+  author  = {Jason T. Rizk and Michael W. D. Cooper and Pierre-Cl{\'{e}}ment A. Simon and Anton J. Schneider and David A. Andersson and Stephen R. Novascone and Christopher Matthews},
+  title   = {Mechanistic nuclear fuel performance modeling of uranium nitride},
+  journal = {Journal of Nuclear Materials},
+  month   = feb,
+  year    = 2025,
+  volume  = 606,
+  pages   = {155604 (xx pages)},
+  note    = {\url{https://doi.org/10.1016/j.jnucmat.2024.155604}}
+}
+
+% libMesh
+% The equations of motion were solved using ... the GNU Scientific library ... and libMesh library (1.6.2)."
+@Article{KahaneRapport_2025,
+  author  = {Shirel R. Kahane-Rapport and Julia Teeple and James C. Liao and E. W. M. Paig-Tran and James A. Strother},
+  title   = {Filter feeding in devil rays is highly sensitive to morphology},
+  journal = {Proceedings of the Royal Society B: Biological Sciences},
+  month   = jan,
+  year    = 2025,
+  volume  = 292,
+  number  = 2039,
+  pages   = {20242037 (12 pages)},
+  note    = {\url{https://doi.org/10.1098/rspb.2024.2037}}
+}
+
+% MOOSE
+% I'm not sure if this preprint is the same as the journal article Mostafavi_2025, they have different titles but the same authors.
+% "The equation system ... is solved by the finite element method ... within the MOOSE framework ..."
+% author:mostafavi author:ranjbar energy analysis
+@Misc{Mostafavi_2025b,
+  author       = {Ali Mostafavi and Mohammadmahdi Ranjbar and Vitaliy Yurkiv and Alexander L. Yarin and Farzad Mashayek},
+  title        = {On the energy analysis of two-phase flows simulated with the diffuse interface method},
+  month        = jan,
+  year         = 2025,
+  howpublished = {ArXiv e-print},
+  note         = {\url{https://arxiv.org/abs/2501.11643}}
+}
+
 % Maybe MOOSE
 % See also: Bhave_2023
 % Requested full-text on ResearchGate
@@ -40,6 +80,7 @@ @Article{Tan_2025
 
 % libMesh
 % "This document is written mainly as a documentation and reference for the implementation of infinite elements in the finite element library libMesh"
+% author:marx mapped infinite elements
 @Misc{Marx_2025,
   author       = {Tobias Marx},
   title        = {Mapped infinite elements in practice},

doc/citations/twentyfour.bib

@@ -1,3 +1,29 @@
+% MOOSE
+% "This paper details implementing a phase field model ... within ... (MOOSE) ..."
+@InProceedings{Sidharth_2024,
+  author    = {P. C. Sidharth and B. N. Rao},
+  title     = {{An open-source phase field model for fracture in orthotropic FGM with adaptive mesh refinement}},
+  booktitle = {{Proceedings of the 9th European Congress on Computational Methods in Applied Sciences and Engineering (ECCOMAS 2024)}},
+  address   = {Lisbon, Portugal},
+  month     = jun # {~3--7,},
+  year      = 2024,
+  note      = {\url{https://www.scipedia.com/public/PC_N_2024a}}
+}
+
+% MOOSE/TIGER
+% "The ... TIGER ... is used to simulate the heat storage processes for the GGB and DeepStor cases. TIGER is developed on top of ... MOOSE..."
+@Article{Dashti_2024,
+  author  = {Ali Dashti and Jens C. Grimmer and Christophe Geuzaine and Florian Bauer and Thomas Kohl},
+  title   = {{Developing meshing workflows in Gmsh v4.11 for the geologic uncertainty assessment of high-temperature aquifer thermal energy storage}},
+  journal = {Geoscientific Model Development},
+  month   = apr,
+  year    = 2024,
+  volume  = 17,
+  number  = 8,
+  pages   = {3467--3485},
+  note    = {\url{https://doi.org/10.5194/gmd-17-3467-2024}, Preprint: \url{https://doi.org/10.5194/gmd-2023-105}}
+}
+
 % Likely MOOSE
 % See also: ZChen_2024, ZChen_2024b
 @phdthesis{ZChen_thesis,
@@ -224,19 +250,6 @@ @Misc{SacMorane_2024b
   note         = {\url{https://arxiv.org/abs/2412.01775}}
 }
 
-% MOOSE
-% "In the final step, the trained DNN acts as a surrogate model within the FEM framework in ... (MOOSE)."
-% https://www.christianpeco.com/uploads/2/3/6/1/23617100/a_bio-lattice_deep_learning_framework_for_modeling_discrete_biological_materials.pdf
-% author:kumar author:upadhyay bio-lattice
-@Misc{Kumar_2024b,
-  author       = {Manik Kumar and Nilay Upadhyay and Shishir Barai and Wesley F. Reinhart and Christian Peco},
-  title        = {A bio-lattice deep learning framework for modeling discrete biological materials},
-  month        = dec,
-  year         = 2024,
-  howpublished = {Preprint submitted to Elsevier},
-  note         = {\url{https://tinyurl.com/57atznp8}}
-}
-
 % MOOSE/MARMOT
 % "... we utilize the open-source parallel MOOSE framework and MOOSE-based application, MARMOT."
 % https://www.osti.gov/biblio/2477153
@@ -405,18 +418,6 @@ @Article{ZChen_2024b
   note    = {\url{https://doi.org/10.1021/acsaenm.4c00526}}
 }
 
-% MOOSE
-% "Complex arithmetic is not directly implemented in most computational simulation software, including the one employed here, ... (MOOSE, ...)"
-% author:shah author:guddati towards linking histological
-@Misc{Shah_2024,
-  author       = {Haritya Shah and Murthy Guddati},
-  title        = {{Towards linking histological changes to liver viscoelasticity: A hybrid analytical-computational micromechanics approach}},
-  month        = nov,
-  year         = 2024,
-  howpublished = {ArXiv e-print},
-  note         = {\url{https://arxiv.org/abs/2411.13530}}
-}
-
 % libMesh
 % "Mesh optimization ... and the SuperLU package library ... are utilized for efficient solution."
 % libMesh is cited for "mesh optimization" and the authors also refer to using the approach from Villada_2021 which also used libMesh.
@@ -2080,19 +2081,6 @@ @TechReport{Choi_2024b
   note        = {\url{https://www.osti.gov/biblio/2356819}}
 }
 
-% MOOSE
-% This is a conference paper from PHYSOR 2024
-@TechReport{Jaradat_2024c,
-  author      = {Mustafa Kamel {Mohammad Jaradat} and Mark D. DeHart and Sebastian Schunert and Frederick N. Gleicher},
-  title       = {{Prediction of the TREAT facility power and temperature of Sirius-2c nuclear propulsion fuel experiment}},
-  institution = {Idaho National Laboratory},
-  day         = 22,
-  month       = apr,
-  year        = 2024,
-  number      = {INL/CON-24-76205},
-  note        = {\url{https://www.osti.gov/biblio/2341470}}
-}
-
 % MOOSE
 % This is a conference paper from PHYSOR 2024
 @TechReport{Jaradat_2024b,

doc/citations/twentythree.bib

@@ -2025,17 +2025,6 @@ @phdthesis{Icenhour_thesis
   year   = 2023
 }
 
-% MOOSE/TIGER
-% "TIGER is developed on top of ... MOOSE..."
-@Article{Dashti_2023,
-  author  = {Ali Dashti and Jens Carsten Grimmer and Christophe Geuzaine and Florian Bauer and Thomas Kohl},
-  title   = {Developing meshing workflows for geologic uncertainty assessment in high-temperature aquifer thermal energy storage},
-  journal = {Geoscientific Model Development},
-  month   = may,
-  year    = 2023,
-  note    = {Preprint, \url{https://doi.org/10.5194/gmd-2023-105}}
-}
-
 % MOOSE
 % "Based on the MOOSE framework..., a multi-dimensional coupling scheme was proposed and used to couple the neutronics (N), thermal hydraulics (TH) and mechanics (M)"
 @Article{Xiang_2023,