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Merge remote-tracking branch 'jwpeterson/citations' into devel
2 parents a291924 + 85d3df5 commit 1e3b671

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doc/citations/maybe.bib

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% that they actually use libMesh, and we can't check because they are
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% behind a paywall/not on sci-hub.
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% Maybe libMesh/IBAMR
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@phdthesis{Fernandez_thesis,
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author = {Dunia Maria Fernandez},
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school = {University of Arizona},
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title = {Fluid dynamics of valveless pumping in tubular hearts},
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note = {\url{https://www.proquest.com/openview/edff5ce5f4e0e199a4e5c9acfe2dca2d/1}},
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month = dec,
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year = 2025
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}
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% Maybe MOOSE/phase_field
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% Requested full-text on ResearchGate
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@Article{Muller_2026,

doc/citations/preprints.bib

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% Preprints
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% MOOSE/Griffin/Pronghorn
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% "In this work, we present the multiphysics simulation results ... using the Griffin-Pronghorn coupled code system."
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% DOI was not yet active when I initially came across this: https://www.tandfonline.com/doi/abs/10.1080/00295639.2026.2619381
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@Article{Jaradat_2026,
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author = {Mustafa K. Jaradat and Javier Ortensi and David Reger and Joshua T. Hanophy and Victor Coppo Leite and Mauricio E. Tano},
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title = {{Multiphysics analyses of the protected and unprotected loss of forced cooling accidents in the HTR-PM}},
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journal = {Nuclear Science and Engineering},
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month = feb,
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year = 2026,
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pages = {xx (21 pages)},
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note = {\url{https://doi.org/10.1080/00295639.2026.2619381}}
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}
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% MOOSE
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% "Axisymmetric laminar air-water flow is described with a fully coupled, fully implicit Cahn--Hilliard--Navier--Stokes phase-field formulation within ... (MOOSE) ..."
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@Article{Mostafavi_2026,
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author = {Ali Mostafavi and Mohammadmahdi Ranjbar and Vitaliy Yurkiv and Alexander L. Yarin and Farzad Mashayek},
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title = {Capillary breakup of liquid jets in the dripping regime and successive drop impacts on a solid surface},
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journal = {International Journal of Numerical Methods for Heat \& Fluid Flow},
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month = feb,
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year = 2026,
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pages = {xx (26 pages)},
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note = {\url{https://doi.org/10.1108/HFF-10-2025-0768}}
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}
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% MOOSE
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% "Here, we used the DFN modeling software Fracman ... via the open-source software finite element framework ... (MOOSE) ..."
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@Article{Weihmann_2026,
@@ -12,18 +37,6 @@ @Article{Weihmann_2026
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note = {\url{https://doi.org/10.1080/00295450.2025.2581510}}
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}
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% MOOSE/BISON
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% "A mechanistic model for predicting Pd penetration depth in TRISO particles was developed in BISON"
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@Article{Bhave_2026,
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author = {Chaitanya Bhave and Mathew Swisher and Jacob Hirschhorn and Ryan Sweet and Pierre-Cl{\'{e}}ment A. Simon and Larry K. Aagesen},
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title = {{A mechanistic, multiscale model for predicting PdPd penetration in TRISO fuels using BISON}},
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journal = {Journal of Nuclear Materials},
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month = feb,
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year = 2026,
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pages = {156536 (xx pages)},
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note = {\url{https://doi.org/10.1016/j.jnucmat.2026.156536}}
25-
}
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% MOOSE/BISON
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% "The simulation framework leverages the thermal-hydraulic capabilities of RELAP5-3D coupled to the BISON fuel performance code ..."
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@Article{Armstrong_2026,
@@ -47,30 +60,6 @@ @Article{Cervi_2026
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note = {Selected papers from the Advances in Thermal Hydraulics (ATH 2024) special issue, \url{https://doi.org/10.1080/00295450.2025.2597662}}
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}
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% MOOSE
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% "The MOOSE-based tools Griffin, Bison, and THM are employed ..."
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@Article{Delipei_2026,
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author = {Gregory K. Delipei and Faure, Quentin and Avramova, Maria and Ivanov, Kostadin},
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title = {High-fidelity multi-physics guidelines for model validation and uncertainty quantification},
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journal = {Frontiers in Nuclear Engineering},
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month = feb,
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year = 2026,
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volume = 4,
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note = {Ensuring Accuracy: Verification and Validation of High-Fidelity Tools for Advanced Nuclear Reactor Simulations, \url{https://doi.org/10.3389/fnuen.2025.1720142}}
60-
}
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62-
% MOOSE
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% "The tools involved are ... MOOSE for thermal hydraulics analysis ..."
64-
@Article{Humphrey_2026,
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author = {Luke Humphrey and Helen Brooks and Siddharth Mungale and Andrew Davis and David Foster},
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title = {Accelerating the engineering design of breeder blankets with parametric optimisation and sequential learning},
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journal = {Frontiers in Nuclear Engineering},
68-
month = feb,
69-
year = 2026,
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volume = 4,
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note = {Advancements in Fusion Neutronics and Applications in Blanket Technologies, \url{https://doi.org/10.3389/fnuen.2025.1694684}}
72-
}
73-
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% MOOSE/Griffin
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% "The designed framework used ... the heat conduction module from Griffin..."
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@Article{Stolte_2026,

doc/citations/twentysix.bib

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% MOOSE
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% "The MOOSE-based tools Griffin, Bison, and THM are employed ..."
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% Note: although this is listed as "Volume 4 - 2025", it was actually published in 2026.
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@Article{Delipei_2026,
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author = {Gregory K. Delipei and Faure, Quentin and Avramova, Maria and Ivanov, Kostadin},
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title = {High-fidelity multi-physics guidelines for model validation and uncertainty quantification},
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journal = {Frontiers in Nuclear Engineering},
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month = feb,
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year = 2026,
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volume = 4,
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pages = {1720142 (30 pages)},
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note = {Ensuring Accuracy: Verification and Validation of High-Fidelity Tools for Advanced Nuclear Reactor Simulations, \url{https://doi.org/10.3389/fnuen.2025.1720142}}
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}
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% MOOSE
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% "The tools involved are ... MOOSE for thermal hydraulics analysis ..."
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% Note: although this is listed as "Volume 4 - 2025", it was actually published in 2026.
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@Article{Humphrey_2026,
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author = {Luke Humphrey and Helen Brooks and Siddharth Mungale and Andrew Davis and David Foster},
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title = {Accelerating the engineering design of breeder blankets with parametric optimisation and sequential learning},
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journal = {Frontiers in Nuclear Engineering},
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month = feb,
23+
year = 2026,
24+
volume = 4,
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pages = {1694684 (17 pages)},
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note = {Advancements in Fusion Neutronics and Applications in Blanket Technologies, \url{https://doi.org/10.3389/fnuen.2025.1694684}}
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}
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% cosRMC/libMesh
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% "At present, cosRMC has also implemented UM-based transport and statistical capabilities using the open-source libMesh library."
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% There is just this one mention of libmesh with no citation. It sounds similar to the way OpenMC uses libmesh.
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@Article{ZhenyuWang_2026,
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author = {Zhenyu Wang and Shichang Liu and Weitong Hu and Yan Yang and Minghui Zhang and Yixue Chen},
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title = {{Development of UM-CSG hybrid geometry and surface mesh transport acceleration algorithm in the cosRMC}},
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journal = {Annals of Nuclear Energy},
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month = jul,
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year = 2026,
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volume = 232,
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pages = {112242 (xx pages)},
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note = {\url{https://doi.org/10.1016/j.anucene.2026.112242}}
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}
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% MOOSE
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% "Verification began by comparing the MOOSE Net Radiation Method to a 1D analytical model..."
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@Article{Seneca_2026,
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author = {Michael Seneca and Haomin Yuan and Tri Nguyen and David Reger and Victor Coppo Leite and Luiz Aldeia and Joseph Seo and Seth Macias and Dezhi Dai and Elia Merzari and Yassin Hassan},
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title = {{Validation of NekRS pebble bed modeling for low flow scenarios}},
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journal = {Nuclear Engineering and Design},
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month = mar,
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year = 2026,
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volume = 448,
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pages = {114693 (xx pages)},
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note = {\url{https://doi.org/10.1016/j.nucengdes.2025.114693}}
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}
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% MOOSE
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% "To provide a numerical benchmark for the experimental results, plane-stress finite element (FE) analysis was performed using MOOSE..."
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@Misc{Amir_2026,
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author = {Ben Amir and Vatsa Gandhi and Angkur Shaikeea and Anthony Dennis and Haydn N. G. Wadley and Vikram Sudhir Deshpande},
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title = {{A laboratory X-ray diffraction based instrument for full field stress-strain measurements in metals}},
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month = feb,
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year = 2026,
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howpublished = {engrXiv e-print},
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note = {\url{https://doi.org/10.31224/6529}}
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}
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% MOOSE/BISON
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% "A mechanistic model for predicting Pd penetration depth in TRISO particles was developed in BISON"
69+
@Article{Bhave_2026,
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author = {Chaitanya Bhave and Mathew Swisher and Jacob Hirschhorn and Ryan Sweet and Pierre-Cl{\'{e}}ment A. Simon and Larry K. Aagesen},
71+
title = {{A mechanistic, multiscale model for predicting PdPd penetration in TRISO fuels using BISON}},
72+
journal = {Journal of Nuclear Materials},
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month = apr,
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year = 2026,
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volume = 625,
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pages = {156536 (xx pages)},
77+
note = {\url{https://doi.org/10.1016/j.jnucmat.2026.156536}}
78+
}
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% MOOSE
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% "The peridynamic models were implemented by extending the open-source finite element framework MOOSE ..."
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@Article{Freimanis_2026,
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author = {Andris Freimanis and Matti Lindroos and Abhishek Biswas and Anssi Laukkanen},
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title = {Penalty force stabilization method for elasto-plastic correspondence models in peridynamics},
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journal = {European Journal of Mechanics - A/Solids},
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month = jul # {--} # aug,
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year = 2026,
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volume = 118,
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pages = {106092 (16 pages)},
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note = {\url{https://doi.org/10.1016/j.euromechsol.2026.106092}}
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}
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% MOOSE/GOLEM
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% "Numerical simulations are performed using GOLEM, an open source multiphysics simulator based on the MOOSE framework ..."
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% https://publications.rwth-aachen.de/record/1020929/files/1020929.pdf
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@phdthesis{Santoso_thesis,
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author = {Ryan Kurniawan Santoso},
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school = {RWTH Aachen University},
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title = {Process-based machine learning for multi-physics and chemistry in geothermal applications: parameter estimation and optimization under uncertainties},
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note = {\url{https://doi.org/10.18154/RWTH-2025-09337}},
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month = feb,
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year = 2026
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}
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% MOOSE/Cardinal
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% "The principal computational tool chosen for this purpose is the high-fidelity code Cardinal ..."
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@Misc{Dalinger_2026,
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author = {Maximiliano Dalinger and Elia Merzari and Saya Lee},
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title = {{Multiphysics modelling of the molten salt fast reactor using NekRS and the fission matrix method}},
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month = feb,
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year = 2026,
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howpublished = {ArXiv e-print},
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note = {\url{https://arxiv.org/abs/2602.18626}}
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}
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% MOOSE
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% "The work establishes a flexible computational framework, primarily implemented using the phase field method within the MOOSE framework."
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@phdthesis{Sun_thesis,
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author = {Jason Sun},
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% MOOSE/RACCOON
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% "... results were obtained via implementation in RACCOON ... built upon the MOOSE framework ..."
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% author:zeng author:dolbow thermal shocks
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@Misc{Zeng_2026,
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author = {Bo Zeng and John E. Dolbow},
113230
title = {A complete phase-field fracture model for brittle materials subjected to thermal shocks},
@@ -747,7 +864,7 @@ @Article{YMiao_2026
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% MOOSE
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% "... (MOOSE), an open-source multi-physics coupling platform, was employed for heat transfer and mechanics calculations."
750-
@Article{ZWang_2026,
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@Article{ZhaohaoWang_2026,
751868
author = {Zhaohao Wang and Jinkai Zhang and Tianliang Hu and Di Yun and Duoyu Jiang and Da Li and Lixin Chen and Wenbo Liu},
752869
title = {{FCMI analysis of multiphysics coupling of fuel rods at the end of cycle of Xi'an pulsed reactor}},
753870
journal = {Annals of Nuclear Energy},

doc/statistics/cloc_libmesh.py

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'2025-12-04', 999, 236672, # b975b673
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# 2026
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'2026-01-04', 999, 236719, # 9e7634c3
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'2026-02-04', 1001, 237207, # 041425a2
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]
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# Extract the dates from the data array

doc/statistics/github_traffic_plotclones.csv

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2026-Feb-20,207,125
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2026-Feb-21,123,91
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2026-Feb-22,82,52
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2026-Feb-23,92,71
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2026-Feb-24,97,77
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2026-Feb-25,145,118
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2026-Feb-26,165,130
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2026-Feb-27,72,54
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2026-Feb-28,35,32
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2026-Mar-01,206,64

doc/statistics/github_traffic_plotviews.csv

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2026-Feb-20,46,16
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2026-Feb-21,33,19
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2026-Feb-22,30,15
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2026-Feb-23,57,29
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2026-Feb-24,80,34
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2026-Feb-25,50,24
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2026-Feb-26,132,38
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2026-Feb-27,116,40
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2026-Feb-28,30,19
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2026-Mar-01,56,23

doc/statistics/libmesh_citations.py

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'\'22', 240,
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'\'23', 238,
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'\'24', 248,
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'\'25', 255,
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'\'26', 43,
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'\'25', 256,
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'\'26', 67,
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]
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# Parse command line args

doc/statistics/libmesh_citations_monthly.py

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'2025-12-01', 240,
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'2026-01-01', 252, # new year
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'2026-02-01', 255,
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'2026-03-01', 256,
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]
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# 2026 monthly publication totals (first of each month)
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'2025-12-01', 10,
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'2026-01-01', 23, # new year
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'2026-02-01', 43,
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'2026-03-01', 67,
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]
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"""

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