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Merge remote-tracking branch 'jwpeterson/citations' into devel
2 parents d524f88 + 8f5138b commit 2734f85

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doc/citations/maybe.bib

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@@ -2,10 +2,48 @@
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% that they actually use libMesh, and we can't check because they are
33
% behind a paywall/not on sci-hub.
44
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% Maybe MOOSE/BISON
6+
@Article{Moharana_2025,
7+
author = {Avinash Moharana and Benjamin W. Spencer and Shanbin Shi},
8+
title = {{A Eulerian three-fluid flow framework for the study of fuel dispersal behavior under loss-of-coolant accident conditions}},
9+
journal = {International Journal of Heat and Mass Transfer},
10+
month = apr,
11+
year = 2025,
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volume = 239,
13+
pages = {126476 (xx pages)},
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note = {\url{https://doi.org/10.1016/j.ijheatmasstransfer.2024.126476}}
15+
}
16+
17+
% Maybe MOOSE
18+
% See also: Gao_2024 which appears to be by some of the same authors.
19+
@Article{YFeng_2025,
20+
author = {Yuqun Feng and Renjie He and Xinjun Chen and Rong Chen and Philippe H. Geubelle and Yuan Gao},
21+
title = {Ellipsoidal shape manufacturing enabled by frontal polymerization with manually induced fluid field},
22+
journal = {Journal of Manufacturing Processes},
23+
month = may,
24+
year = 2025,
25+
volume = 142,
26+
pages = {222--230},
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note = {\url{https://doi.org/10.1016/j.jmapro.2025.03.095}}
28+
}
29+
30+
% Maybe MOOSE
31+
% Requested full-text on ResearchGate
32+
@Article{Stewart_2025,
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author = {Ryan Stewart and Eduardo Trevi{\~{n}}o and Ashley Shields and Kolton Heaps and John Darrington and Quinton Williams and Chad Pope and Johnathan Scott and Benjamin Baker and Jaden Palmer and Benoni Vainqueur and Todd S. Palmer and Camille Palmer and Samuel Bays and Mark Schanfein and Gustavo Reyes and Christopher Ritter},
34+
title = {{The AGN-201 Digital Twin: A test bed for remotely monitoring nuclear reactors}},
35+
journal = {Annals of Nuclear Energy},
36+
month = apr,
37+
year = 2025,
38+
volume = 213,
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pages = {111041 (xx pages)},
40+
note = {\url{https://doi.org/10.1016/j.anucene.2024.111041}}
41+
}
42+
543
% Maybe MOOSE
644
@Article{JZhao_2024,
745
author = {J. Zhao and L. Wan and M. Habibi and A. Brahmia},
8-
title = {An adaptive neuro-fuzzy approach using IoT data in predicting springback in ultra-thin stainless steel sheets with consideration of grain size},
46+
title = {An adaptive neuro-fuzzy approach using {IoT} data in predicting springback in ultra-thin stainless steel sheets with consideration of grain size},
947
journal = {Advances in Nano Research},
1048
month = aug,
1149
year = 2024,
@@ -45,6 +83,7 @@ @Article{Merzari_2025
4583

4684
% Maybe MOOSE
4785
% They might use MOOSE to compare with their own code's performance.
86+
% Requested full-text on ResearchGate
4887
@Article{Maqbool_2025,
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author = {Shahid Maqbool and Byeong-Joo Lee},
5089
title = {{High performance additive manufacturing phase field simulation: Fortran Do Concurrent vs OpenMP}},
@@ -70,6 +109,7 @@ @InCollection{Lubguban_2025
70109

71110
% Maybe MOOSE
72111
% This is a math paper so it seems unlikely they used MOOSE.
112+
% Requested full-text on ResearchGate
73113
@Article{Makki_2025,
74114
author = {Ahmad Makki and Rim Mheich and Madalina Petcu and Raafat Talhouk},
75115
title = {{Asymptotic behavior of the coupled Allen-Cahn/Cahn-Hilliard system with proliferation term}},

doc/citations/preprints.bib

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@@ -1,5 +1,56 @@
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% Preprints
22
3+
% MOOSE
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% "We coupled our in-house wellbore simulator (Moskito) with the reservoir simulator (PorousFlow) under the MOOSE framework to analyze wellbore heat loss."
5+
% See also: the conference paper GYan_2025
6+
@Article{GYan_2025b,
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author = {Guoqiang Yan and P{\aa}l {\O}steb{\o} Andersen and Yangyang Qiao and Dimitrios Georgios Hatzignatiou and Bo Feng and Thomas Kohl},
8+
title = {Investigating the impact of wellbore lateral heat transfer on the performance of high-temperature aquifer thermal energy storage system by the coupling of wellbore and reservoir simulators},
9+
journal = {Geoenergy Science and Engineering},
10+
month = apr,
11+
year = 2025,
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pages = {213874 (xx pages)},
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note = {\url{https://doi.org/10.1016/j.geoen.2025.213874}}
14+
}
15+
16+
% MOOSE
17+
% "The software that are utilized in the process are 3D Slicer ..., MOOSE framework ... and ParaView ..."
18+
@Article{Paul_2025,
19+
author = {Debangshu Paul and Zachariah Arwood and Pierre-Yves Mulon and Dayakar Penumadu and Timothy Truster},
20+
title = {Phase field modeling for fracture prediction in goat tibia using an open-source quantitative computer tomography based finite element framework},
21+
journal = {Biomedical Engineering Advances},
22+
month = apr,
23+
year = 2025,
24+
pages = {100164 (45 pages)},
25+
note = {\url{https://doi.org/10.1016/j.bea.2025.100164}}
26+
}
27+
28+
% MOOSE/BlackBear
29+
% Note: the Oct 2024 engrXiv e-print has a slightly different title,
30+
% "Computational assessment of alkali-silica-reaction impact on the seismic capacity of nuclear containment vessels"
31+
% but the authors are the same, so I'm treating it as a preprint for this paper.
32+
@Article{Dahal_2025b,
33+
author = {Albert Dahal and Benjamin W. Spencer and Somayajulu L. N. Dhulipala and Amit Jain and Luis F. Ibarra},
34+
title = {Coupled alkali-silica-reaction/seismic simulation of nuclear containment vessels},
35+
journal = {International Journal of Mechanical Sciences},
36+
month = apr,
37+
year = 2025,
38+
pages = {110185 (xx pages)},
39+
note = {\url{https://doi.org/10.1016/j.ijmecsci.2025.110185}, engr$\chi$iv e-print: \url{https://doi.org/10.31224/4042}}
40+
}
41+
42+
% MOOSE
43+
% "For all PF simulations, the ... equations ... were solved using the ... (MOOSE) framework ..."
44+
@Article{Ta_2025,
45+
author = {An T. Ta and Yixi Shen and R. Seaton Ullberg and Michael R. Tonks and Simon R. Phillpot and Douglas E. Spearot},
46+
title = {Impact of position and density of nanoscale voids on fracture initiation in iron from phase field fracture simulation},
47+
journal = {Mechanics of Materials},
48+
month = apr,
49+
year = 2025,
50+
pages = {105348 (xx pages)},
51+
note = {\url{https://doi.org/10.1016/j.mechmat.2025.105348}}
52+
}
53+
354
% Maybe MOOSE
455
@Article{Limon_2025,
556
author = {Md Salman Rabbi Limon and Curtis Wesley Duffee and Zeeshan Ahmad},
@@ -110,17 +161,6 @@ @Article{Robinson_2025
110161
note = {\url{https://doi.org/10.1002/ppap.70000}}
111162
}
112163

113-
% MOOSE
114-
@Article{TianchenHu_2025,
115-
author = {Tianchen Hu and Mark C. Messner},
116-
title = {{A simple, scalable large deformation solid mechanics implementation in the MOOSE framework}},
117-
journal = {ACM Transactions on Mathematical Software},
118-
month = feb,
119-
year = 2025,
120-
pages = {xx (22 pages)},
121-
note = {\url{https://doi.org/10.1145/3716308}}
122-
}
123-
124164
% MOOSE/Cardinal
125165
% "we use the Cardinal ... (MOOSE) application ... to run coupled simulations"
126166
% To be combined with: Leite_2023
@@ -198,18 +238,6 @@ @Article{Price_2024
198238
note = {\url{https://doi.org/10.1080/00295639.2024.2409582}}
199239
}
200240

201-
% MOOSE
202-
% "FE model is coupled with phase field damage using the MOOSE multiphysics finite element framework ..."
203-
@Article{DHu_2024b,
204-
author = {Daijun Hu and Nicol{\`{o}} Grilli and Wentao Yan},
205-
title = {{From process to property: multi-physics modeling of dislocation dynamics and microscale damage in metal additive manufacturing}},
206-
journal = {Computational Mechanics},
207-
month = oct,
208-
year = 2024,
209-
pages = {xx (21 pages)},
210-
note = {\url{https://doi.org/10.1007/s00466-024-02560-7}}
211-
}
212-
213241
% MOOSE/SAM
214242
@Article{LZou_2024b,
215243
author = {Ling Zou and Thanh Hua and Zhiee Jhia Ooi and Jun Fang and Rui Hu},

doc/citations/twentyfive.bib

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@@ -1,6 +1,97 @@
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% libMesh/PETSc
2+
% "The algorithms are implemented using libMesh ... for generating the stiffness matrices, and PETSc ... for the linear solver."
3+
@Article{LiLuo_2025,
4+
author = {Li Luo and Qian Zhang and Haochen Liu and Jinpeng Zhang and Xiao-Ping Wang},
5+
title = {{A numerical study of two-phase flows in complex domain with a generalized Navier slip and penetration boundary condition on permeable boundaries}},
6+
journal = {Journal of Computational Physics},
7+
month = jul,
8+
year = 2025,
9+
volume = 533,
10+
pages = {113980 (xx pages)},
11+
note = {\url{https://doi.org/10.1016/j.jcp.2025.113980}}
12+
}
13+
14+
% MOOSE
15+
@Article{TianchenHu_2025,
16+
author = {Tianchen Hu and Mark C. Messner},
17+
title = {{A simple, scalable large deformation solid mechanics implementation in the MOOSE framework}},
18+
journal = {ACM Transactions on Mathematical Software},
19+
month = mar,
20+
year = 2025,
21+
volume = 51,
22+
number = 1,
23+
pages = {4 (22 pages)},
24+
note = {\url{https://doi.org/10.1145/3716308}}
25+
}
26+
27+
% MOOSE
28+
% "FE model is coupled with phase field damage using the MOOSE multiphysics finite element framework ..."
29+
@Article{DHu_2025,
30+
author = {Daijun Hu and Nicol{\`{o}} Grilli and Wentao Yan},
31+
title = {{From process to property: multi-physics modeling of dislocation dynamics and microscale damage in metal additive manufacturing}},
32+
journal = {Computational Mechanics},
33+
month = apr,
34+
year = 2025,
35+
volume = 75,
36+
number = 4,
37+
pages = {1241--1261},
38+
note = {\url{https://doi.org/10.1007/s00466-024-02560-7}}
39+
}
40+
41+
% MOOSE
42+
% "The model is implemented in ... (MOOSE) ..."
43+
@Article{Dahal_2025,
44+
author = {Albert Dahal and Luis Ibarra},
45+
title = {Development of a consistent hysteretic model with kinematic hardening and isotropic softening},
46+
journal = {Structures},
47+
month = may,
48+
year = 2025,
49+
volume = 75,
50+
pages = {108766 (14 pages)},
51+
note = {\url{https://doi.org/10.1016/j.istruc.2025.108766}}
52+
}
53+
54+
% MOOSE
55+
% "First, we implemented a fully coupled in-house wellbore simulator (MOSKIO) integrated with a reservoir simulator (PorousFlow) under the framework of MOOSE..."
56+
@InProceedings{GYan_2025,
57+
author = {G. Yan and P. {\O}. Andersen and Y. Qiao and D. G. Hatzignatiou and T. Kohl},
58+
title = {Impact of wellbore lateral heat transfer on the performance of high-temperature aquifer thermal energy storage system},
59+
booktitle = {{Proceedings of the 23rd European Symposium on IOR (IOR+ 2025)}},
60+
address = {Edinburgh, Scotland},
61+
pages = {xx (10 pages)},
62+
month = apr # {~2--4,},
63+
year = 2025,
64+
note = {\url{https://doi.org/10.3997/2214-4609.202531057}}
65+
}
66+
67+
% MOOSE
68+
% "... the present work uses a much higher-fidelity MOOSE ... model..."
69+
% author:tunkle author:abdulraheem nuclear microreactor reinforcement
70+
@Misc{Tunkle_2025,
71+
author = {Leo Tunkle and Kamal Abdulraheem and Linyu Lin and Majdi I. Radaideh},
72+
title = {Nuclear microreactor control with deep reinforcement learning},
73+
month = mar,
74+
year = 2025,
75+
howpublished = {ArXiv e-print},
76+
note = {\url{https://arxiv.org/abs/2504.00156}}
77+
}
78+
79+
% MOOSE
80+
% "The crystal plasticity and phase-field damage model are implemented into the finite element framework MOOSE..."
81+
@Article{YingyingWang_2025,
82+
author = {Yingying Wang and Nicol{\`{o}} Grilli and Michael Salvini and Yao Yao},
83+
title = {{Microscale deformation, residual stress and fracture behavior of additively manufactured alpha-Ti: Combined crystal plasticity and phase-field damage modeling}},
84+
journal = {Computational Materials Science},
85+
month = apr,
86+
year = 2025,
87+
volume = 252,
88+
pages = {113767 (xx pages)},
89+
note = {\url{https://doi.org/10.1016/j.commatsci.2025.113767}}
90+
}
91+
192
% MOOSE/Sockeye
293
@Misc{Hansel_2025,
3-
author = {Hansel, Joshua Edmund and Ortensi, Javier and Jaradat, Mustafa},
94+
author = {Joshua Edmund Hansel and Javier Ortensi and Mustafa Jaradat},
495
title = {{Microreactor heat pipe coupling studies using Sockeye}},
596
month = jan,
697
year = 2025,

doc/citations/twentyfour.bib

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@@ -1102,19 +1102,6 @@ @Article{Novak_2024
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note = {\url{https://doi.org/10.1016/j.nucengdes.2024.113589}}
11031103
}
11041104

1105-
% MOOSE
1106-
% "All simulations were run using BlackBear ... which is ... based on ... (MOOSE) ..."
1107-
% This has a very similar author list and title to Jain_2024, however it has different results and is a distinct paper.
1108-
% author:dahal computational assessment of alkali
1109-
@Misc{Dahal_2024,
1110-
author = {Albert Dahal},
1111-
title = {Computational assessment of alkali-silica-reaction impact on the seismic capacity of nuclear containment vessels},
1112-
month = oct,
1113-
year = 2024,
1114-
howpublished = {engr$\chi$iv e-print},
1115-
note = {\url{https://doi.org/10.31224/4042}}
1116-
}
1117-
11181105
% MOOSE
11191106
% "The fatigue-damage model was implemented using the MOOSE ... framework ..."
11201107
@Article{DTian_2024,

doc/statistics/github_traffic_plotclones.csv

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2025-Mar-28,75,41
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2025-Mar-29,57,41
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2025-Mar-30,32,21
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2025-Mar-31,20,15
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2025-Mar-31,61,47
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2025-Apr-01,106,60
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2025-Apr-02,115,62
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2025-Apr-03,99,43
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2025-Apr-04,52,36
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2025-Apr-05,19,15
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2025-Apr-06,11,11
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2025-Apr-07,24,19

doc/statistics/github_traffic_plotviews.csv

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2025-Mar-30,142,13
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2025-Mar-31,57,12
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2025-Mar-31,156,30
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2025-Apr-01,239,42
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2025-Apr-02,146,40
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2025-Apr-03,174,30
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2025-Apr-04,72,28
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2025-Apr-05,20,9
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2025-Apr-06,18,8
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2025-Apr-07,31,10

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