Merge remote-tracking branch 'jwpeterson/citations' into devel

Author: jwpeterson

doc/citations/maybe.bib

@@ -2,6 +2,33 @@
 % that they actually use libMesh, and we can't check because they are
 % behind a paywall/not on sci-hub.
 
+% Maybe MOOSE
+% Requested full-text on ResearchGate
+@Article{DWu_2026,
+  author  = {Defan Wu and Zhenhua Zhang and Zixu Guo and Daijun Hu and Zhijie Wang and Weiwei Wu and Shiwei Wu and Shoufeng Yang and Yilun Xu and Wentao Yan and Quanquan Han},
+  title   = {{Analysis of the intermediate temperature brittleness of LPBF-fabricated Ni-based alloys with high $\gamma'$ phase fraction}},
+  journal = {Materials Science and Engineering: A},
+  month   = feb,
+  year    = 2026,
+  volume  = 953,
+  pages   = {149713 (xx pages)},
+  note    = {\url{https://doi.org/10.1016/j.msea.2025.149713}}
+}
+
+% Maybe MOOSE
+% Requested full-text on ResearchGate
+@Article{HDeng_2026,
+  author  = {Hao Deng and Noah Paulson and Mark C. Messner},
+  title   = {Metamaterial design based on autoencoder representation using an active learning method},
+  journal = {Structural and Multidisciplinary Optimization},
+  month   = jan,
+  year    = 2026,
+  volume  = 69,
+  number  = 1,
+  pages   = {21 (xx pages)},
+  note    = {\url{https://doi.org/10.1007/s00158-025-04231-4}}
+}
+
 % Maybe libmesh
 @Article{ZXin_2026,
   author  = {Zhiqiang Xin and Zihao Huang and Runze Zhang },

doc/citations/preprints.bib

@@ -1,5 +1,17 @@
 % Preprints
 
+% MOOSE
+% "The 2D modified IK model was solved using ... (MOOSE), ..."
+@Article{XXu_2025,
+  author  = {Xinyuan Xu and Xingyu Liu and William J. Weber and Yanwen Zhang and Xing Wang},
+  title   = {{Combining 2D simulations with atom probe tomography to investigate radiation-induced segregation near nanoscale cavities}},
+  journal = {npj Materials Degradation},
+  month   = dec,
+  year    = 2025,
+  pages   = {xx (33 pages)},
+  note    = {\url{https://doi.org/10.1038/s41529-025-00727-y}}
+}
+
 % Maybe MOOSE
 % See also: Gorgogianni_2025
 @Article{Gorgogianni_2025b,

doc/citations/twentyfive.bib

@@ -1,3 +1,31 @@
+% MOOSE
+% "This paper demonstrates a tractable scheme ... integrated into a ... (MOOSE) ... application"
+@Article{Kaur_2025,
+  author  = {Sanjeet Kaur and Daniel R. Mason and Prashanth Srinivasan and Stephen Dixon and Sid Mungale and Teresa Orr and Mikhail {Yu. Lavrentiev} and Duc Nguyen-Manh},
+  title   = {Effect of multi-occupancy traps on the diffusion and retention of multiple hydrogen isotopes in irradiated tungsten and vanadium},
+  journal = {Physical Review Materials},
+  month   = dec,
+  year    = 2025,
+  volume  = 9,
+  number  = 12,
+  pages   = {125404 (14 pages)},
+  note    = {\url{https://doi.org/10.1103/nbwm-bs8m}}
+}
+
+% libMesh/MULTICOMP
+% "The calculations are performed using proprietary code based on the libMesh library..."
+@InProceedings{Sinitsa_2025,
+  author    = {Alexander Sinitsa and Andrey Kniznik and Denis Shirabaykin and Sergey Trepalin and Boris Potapkin and Pavel Komarov},
+  title     = {{Thermal conductivity calculations in the MULTICOMP package}},
+  booktitle = {{Supercomputing: 11th Russian Supercomputing Days (RuSCDays 2025)}},
+  address   = {Moscow, Russia},
+  editor    = {Vladimir Voevodin and Alexander Antonov and Dmitry Nikitenko},
+  pages     = {119--132},
+  month     = sep # {~29--30,},
+  year      = 2025,
+  note      = {\url{https://doi.org/10.1007/978-3-032-13127-0_9}}
+}
+
 % MOOSE
 % "These equations are solved with the finite element method using the ... (MOOSE) framework ..."
 @Article{Rayaprolu_2025,
@@ -2078,14 +2106,16 @@ @Article{KFeng_2025
 }
 
 % MOOSE
-% author:dhulipala author:german ProbML
-@Misc{Dhulipala_2025,
-  author       = {Somayajulu L. N. Dhulipala and Peter German and Yifeng Che and Zachary M. Prince and Pierre-Cl{\'{e}}ment A. Simon and Xianjian Xie and Vincent M. Labour{\'{e}} and Hao Yan},
-  title        = {{MOOSE ProbML: Parallelized probabilistic machine learning and uncertainty quantification for computational energy applications}},
-  month        = apr,
-  year         = 2025,
-  howpublished = {ArXiv e-print},
-  note         = {\url{https://arxiv.org/abs/2504.17101}}
+% MOOSE in title.
+@Article{Dhulipala_2025,
+  author  = {Somayajulu L. N. Dhulipala and Peter German and Yifeng Che and Zachary M. Prince and Pierre-Cl{\'{e}}ment A. Simon and Xianjian Xie and Vincent M. Labour{\'{e}} and Hao Yan},
+  title   = {{MOOSE ProbML: Parallelized probabilistic machine learning and uncertainty quantification for computational energy applications}},
+  journal = {Journal of Computational Science},
+  month   = feb,
+  year    = 2026,
+  volume  = 94,
+  pages   = {102776 (xx pages)},
+  note    = {\url{https://doi.org/10.1016/j.jocs.2025.102776}, ArXiv e-print: \url{https://arxiv.org/abs/2504.17101}}
 }
 
 % MOOSE

doc/citations/twentysix.bib

@@ -1,3 +1,95 @@
+% MOOSE
+% "The existing model on the VTB uses ... (NEAMS) codes built on ... (MOOSE) framework"
+@Article{Walker_2026,
+  author  = {Samuel Walker and Ryan Stewart and Odera Dim and Emerald Ryan and Carlos Soto and Rodrigo de Oliveira and Parikshit Bajpai and Cihang Lu},
+  title   = {Exploring diversion-pathway analysis of a generic molten-salt fast reactor using multiphysics informed signatures},
+  journal = {Progress in Nuclear Energy},
+  month   = jan,
+  year    = 2026,
+  volume  = 191,
+  pages   = {106047 (19 pages)},
+  note    = {\url{https://doi.org/10.1016/j.pnucene.2025.106047}}
+}
+
+% MOOSE
+% "Numerical modeling is performed using ... MOOSE ..."
+@Article{Egert_2026,
+  author  = {Robert Egert and Ghanashyam Neupane and Wencheng Jin},
+  title   = {On the viability of stimulated hydrogen generation from iron-rich formations},
+  journal = {Geoenergy Science and Engineering},
+  month   = jan,
+  year    = 2026,
+  volume  = 256,
+  pages   = {214130 (12 pages)},
+  note    = {\url{https://doi.org/10.1016/j.geoen.2025.214130}}
+}
+
+% MOOSE
+% "Implemented within MOOSE, the approach is readily extensible..."
+@Article{Gencturk_2026,
+  author  = {Merve Gencturk and Karim Ahmed},
+  title   = {{Linking buffer microstructure to TRISO nuclear fuel thermo-mechanical integrity: A multiscale modeling study}},
+  journal = {Energies},
+  month   = jan,
+  year    = 2026,
+  volume  = 19,
+  number  = 1,
+  pages   = {56 (25 pages)},
+  note    = {\url{https://doi.org/10.3390/en19010056}}
+}
+
+% MOOSE
+% MOOSE in title
+@Article{Genoni_2026,
+  author  = {Chiara Genoni and Kyle A. Gamble and Davide Pizzocri and Fabiola Cappia and Tommaso Bergomi and Chase Christen and Seongtae Kwon},
+  title   = {{Porous flow modeling of axial gas redistribution in fragmented LWR fuel rods using MOOSE}},
+  journal = {Nuclear Engineering and Design},
+  month   = mar,
+  year    = 2026,
+  volume  = 448,
+  pages   = {114677 (xx pages)},
+  note    = {\url{https://doi.org/10.1016/j.nucengdes.2025.114677}}
+}
+
+% MOOSE
+% "Our study employs the MOOSE Framework ..."
+@Article{Upadesh_2026,
+  author  = {Upadesh Subedi and Aadya Bhattarai and Nele Moelans and Tomasz Ta{\'{n}}ski and Anil Kunwar},
+  title   = {{Spatiotemporally learning the morphological and dynamic features of Au meltpool under different heat source types with phase-field informed U-Net framework}},
+  journal = {Computational Materials Science},
+  month   = feb,
+  year    = 2026,
+  volume  = 263,
+  pages   = {114456 (xx pages)},
+  note    = {\url{https://doi.org/10.1016/j.commatsci.2025.114456}}
+}
+
+% MOOSE/Cardinal
+@Article{Eltawila_2026,
+  author  = {Mahmoud Eltawila and Pierre-Cl{\'{e}}ment A. Simon and Guillaume L. Giudicelli and Helen Brooks and Nicholas Wozniak and April J. Novak},
+  title   = {{Thermomechanics coupling to Monte Carlo particle transport on unstructured mesh geometries using Cardinal}},
+  journal = {Annals of Nuclear Energy},
+  month   = may,
+  year    = 2026,
+  volume  = 229,
+  pages   = {112068 (xx pages)},
+  note    = {\url{https://doi.org/10.1016/j.anucene.2025.112068}}
+}
+
+% MOOSE
+% "A chemo-elasto-plastic modeling framework was implemented in ... (MOOSE) ..."
+@Article{Pope_2026,
+  author  = {Jackson Pope and Maxwell Schulze and Ryan Tancin and Avtar Singh and Ankit Verma and Juliane Preimesberger and Jaclyn Coyle and Andrew Colclasure and Chunmei Ban and Bertrand J. {Tremolet de Villers}},
+  title   = {Laser ablation for managing mechanical stresses in high-capacity silicon anodes for lithium-ion batteries},
+  journal = {Journal of The Electrochemical Society},
+  month   = jan,
+  year    = 2026,
+  volume  = 173,
+  number  = 1,
+  pages   = {010502 (10 pages)},
+  note    = {\url{https://doi.org/10.1149/1945-7111/ae2f03}}
+}
+
 % MOOSE/GOLEM
 % "The hydraulic simulations, representing the well tests, were generated using MOOSE ... and GOLEM..."
 @Article{Morsi_2026,