Merge remote-tracking branch 'jwpeterson/citations' into devel

Author: jwpeterson

doc/citations/maybe.bib

@@ -2,6 +2,33 @@
 % that they actually use libMesh, and we can't check because they are
 % behind a paywall/not on sci-hub.
 
+% Maybe MOOSE
+% Requested full-text on ResearchGate
+@Article{Wangen_2025,
+  author  = {Magnus Wangen},
+  title   = {{Numerical solutions for coaxial borehole heat exchangers using CO$_2$ as a working fluid}},
+  journal = {Applied Thermal Engineering},
+  month   = apr,
+  year    = 2025,
+  volume  = 264,
+  pages   = {125295 (xx pages)},
+  note    = {\url{https://doi.org/10.1016/j.applthermaleng.2024.125295}}
+}
+
+% Maybe MOOSE
+% Requested full-text on ResearchGate
+@Article{Jayanarasimhan_2025,
+  author  = {Ananthanarasimhan Jayanarasimhan and Robert Pierrard and Sean M. Peyres and Shurik Yatom and Davide Curreli and R. Mohan Sankaran},
+  title   = {Insights into sustainable nitrogen fixation by gas-phase spectroscopic measurements and global modeling of reaction intermediates in humid nitrogen plasma},
+  journal = {ACS Sustainable Chemistry \& Engineering},
+  month   = jan,
+  year    = 2025,
+  volume  = 13,
+  number  = 1,
+  pages   = {140--150},
+  note    = {\url{https://doi.org/10.1021/acssuschemeng.4c05771}}
+}
+
 % Maybe MOOSE
 % Requested full-text on ResearchGate
 @Article{JJang_2025,

doc/citations/preprints.bib

@@ -1,5 +1,37 @@
 % Preprints
 
+% MOOSE
+@Article{Martin_2025,
+  author  = {Nicolas Martin and Lise Charlot and Gerhard Strydom},
+  title   = {{A MOOSE-based model for fission product transport and source term estimation for high-temperature gas-cooled reactors}},
+  journal = {Nuclear Technology},
+  month   = jan,
+  year    = 2025,
+  note    = {\url{https://doi.org/10.1080/00295450.2024.2425916}}
+}
+
+% MOOSE
+@Article{Mostafavi_2025,
+  author  = {Ali Mostafavi and Mohammadmahdi Ranjbar and Vitaliy Yurkiv and Alexander L. Yarin and Farzad Mashayek},
+  title   = {{MOOSE-based finite element framework for mass-conserving two-phase flow simulations on adaptive grids using the diffuse interface approach and a Lagrange multiplier}},
+  journal = {Journal of Computational Physics},
+  month   = jan,
+  year    = 2025,
+  pages   = {113755 (xx pages)},
+  note    = {\url{https://doi.org/10.1016/j.jcp.2025.113755}}
+}
+
+% MOOSE/BISON
+@Article{Rizk_2025,
+  author  = {Jason T. Rizk and Michael W. D. Cooper and Pierre-Cl{\'{e}}ment A. Simon and Anton J. Schneider and David A. Andersson and Stephen R. Novascone and Christopher Matthews},
+  title   = {Mechanistic nuclear fuel performance modeling of uranium nitride},
+  journal = {Journal of Nuclear Materials},
+  month   = jan,
+  year    = 2025,
+  pages   = {155604 (xx pages)},
+  note    = {\url{https://doi.org/10.1016/j.jnucmat.2024.155604}}
+}
+
 % Maybe MOOSE
 % Requested full-text on ResearchGate
 @Article{Jain_2025,
@@ -11,29 +43,6 @@ @Article{Jain_2025
   note    = {\url{https://doi.org/10.1002/suco.202400893}}
 }
 
-% MOOSE
-% "DiscoFlux is implemented into the open-source finite element code MOOSE."
-@Article{Chakraborty_2024,
-  author  = {Subhendu Chakraborty and Abigail Hunter and D. J. Luscher},
-  title   = {Modeling inter- and intra-granular dislocation transport using crystal plasticity},
-  journal = {International Journal of Plasticity},
-  month   = dec,
-  year    = 2024,
-  pages   = {104222 (xx pages)},
-  note    = {\url{https://doi.org/10.1016/j.ijplas.2024.104222}}
-}
-
-% Maybe MOOSE
-@Article{Wangen_2024,
-  author  = {Magnus Wangen},
-  title   = {{Numerical solutions for coaxial borehole heat exchangers using CO$_2$ as a working fluid}},
-  journal = {Applied Thermal Engineering},
-  month   = dec,
-  year    = 2024,
-  pages   = {125295 (xx pages)},
-  note    = {\url{https://doi.org/10.1016/j.applthermaleng.2024.125295}}
-}
-
 % libMesh/RMC
 % "To achieve this, the RMC-libMesh interface layer is developed based on the libMesh."
 @Article{JieLi_2024,
@@ -57,17 +66,6 @@ @Article{YCSu_2024
   note    = {\url{https://doi.org/10.1002/nag.3925}}
 }
 
-% Maybe MOOSE
-% Requested full-text on ResearchGate
-@Article{Jayanarasimhan_2024,
-  author  = {Ananthanarasimhan Jayanarasimhan and Robert Pierrard and Sean M. Peyres and Shurik Yatom and Davide Curreli and R. Mohan Sankaran},
-  title   = {Insights into sustainable nitrogen fixation by gas-phase spectroscopic measurements and global modeling of reaction intermediates in humid nitrogen plasm},
-  journal = {ACS Sustainable Chemistry \& Engineering},
-  month   = dec,
-  year    = 2024,
-  note    = {\url{https://doi.org/10.1021/acssuschemeng.4c05771}}
-}
-
 % MOOSE
 % "The model is numerically implemented using ... (MOOSE)..."
 @Article{ZhenhuiZhang_2024,
@@ -79,18 +77,6 @@ @Article{ZhenhuiZhang_2024
   note    = {\url{https://doi.org/10.1007/s00707-024-04163-y}}
 }
 
-% MOOSE/GOLEM
-% "In this study, we utilize the GOLEM simulator ... which is built upon the ... MOOSE framework..."
-@Article{Vadiee_2024,
-  author  = {Saeed Vadiee and Biao Li and Jasmin Raymond and Mafalda M. Miranda},
-  title   = {{Numerical modeling of the long-term poromechanical performance of a deep enhanced geothermal system in northern Qu{\'{e}}bec}},
-  journal = {Rock Mechanics Bulletin},
-  month   = nov,
-  year    = 2024,
-  pages   = {100170 (xx pages)},
-  note    = {\url{https://doi.org/10.1016/j.rockmb.2024.100170}}
-}
-
 % MOOSE/HADES
 % "The code used for thermal-hydraulic behavior analysis is the HADES code ... based on ... (MOOSE)..."
 @Article{Park_2024b,

doc/citations/twentyfive.bib

@@ -1,4 +1,96 @@
-% Likely MOOSE
+% Maybe MOOSE
+% See also: Bhave_2023
+% Requested full-text on ResearchGate
+@Article{Bhave_2025,
+  author  = {Chaitanya Bhave and Michael R. Tonks},
+  title   = {{The effect of nickel coatings on corrosion of nickel-chrome alloys in molten FLiBe determined using a phase-field model}},
+  journal = {Journal of Nuclear Materials},
+  month   = feb,
+  year    = 2025,
+  volume  = 606,
+  pages   = {155616 (xx pages)},
+  note    = {\url{https://doi.org/10.1016/j.jnucmat.2025.155616}}
+}
+
+% MOOSE
+% "In our investigation, the PorousFlow and TensorMechanics modules within the MOOSE framework ... were used to construct our numerical model ..."
+@Article{Ouf_2025,
+  author  = {Josselin Ouf and Philip J. Vardon and Kavan Khaledi and Wen Luo and Mohammadreza Jalali and Florian Amann},
+  title   = {Numerical analysis of far-field fault reactivation induced by reservoir cooling},
+  journal = {Geothermics},
+  month   = mar,
+  year    = 2025,
+  volume  = 127,
+  pages   = {103234 (13 pages)},
+  note    = {\url{https://doi.org/10.1016/j.geothermics.2024.103234}}
+}
+
+% MOOSE
+% "The aforementioned finite strain elastoplastic damage model was implemented within ... (MOOSE)."
+@Article{Tan_2025,
+  author  = {Tianwen Tan and Ikumu Watanabe},
+  title   = {Gradient-enhanced ductile fracture constitutive modeling in implicit two-scale finite element analysis},
+  journal = {Journal of the Mechanics and Physics of Solids},
+  month   = mar,
+  year    = 2025,
+  volume  = 196,
+  pages   = {106025 (25 pages)},
+  note    = {\url{https://doi.org/10.1016/j.jmps.2025.106025}}
+}
+
+% libMesh
+% "This document is written mainly as a documentation and reference for the implementation of infinite elements in the finite element library libMesh"
+@Misc{Marx_2025,
+  author       = {Tobias Marx},
+  title        = {Mapped infinite elements in practice},
+  month        = jan,
+  year         = 2025,
+  howpublished = {ArXiv e-print},
+  note         = {\url{https://arxiv.org/abs/2501.05568}}
+}
+
+% MOOSE
+% "DiscoFlux is implemented into the open-source finite element code MOOSE."
+@Article{Chakraborty_2025,
+  author  = {Subhendu Chakraborty and Abigail Hunter and D. J. Luscher},
+  title   = {Modeling inter- and intra-granular dislocation transport using crystal plasticity},
+  journal = {International Journal of Plasticity},
+  month   = feb,
+  year    = 2025,
+  volume  = 185,
+  pages   = {104222 (xx pages)},
+  note    = {\url{https://doi.org/10.1016/j.ijplas.2024.104222}}
+}
+
+% MOOSE/GOLEM
+% "In this study, we utilize the GOLEM simulator ... which is built upon the ... MOOSE framework..."
+@Article{Vadiee_2025,
+  author  = {Saeed Vadiee and Biao Li and Jasmin Raymond and Mafalda M. Miranda},
+  title   = {{Numerical modeling of the long-term poromechanical performance of a deep enhanced geothermal system in northern Qu{\'{e}}bec}},
+  journal = {Rock Mechanics Bulletin},
+  month   = jan,
+  year    = 2025,
+  volume  = 4,
+  number  = 1,
+  pages   = {100170 (19 pages)},
+  note    = {\url{https://doi.org/10.1016/j.rockmb.2024.100170}}
+}
+
+% MOOSE
+% "Our model is based on the MOOSE/GOLEM framework..."
+@Article{AbreuTorres_2025,
+  author  = {Javier Abreu-Torres and Gerg{\H{o}} Hutka and Guido Bl{\"{o}}cher and Mauro Cacace and Vincent Magnenet and Jean Schmittbuhl},
+  title   = {{Large-scale reservoir modeling of the Vendenheim geothermal site (France)}},
+  journal = {Advances in Geosciences},
+  month   = jan,
+  year    = 2025,
+  volume  = 65,
+  pages   = {117--125},
+  note    = {\url{https://doi.org/10.5194/adgeo-65-117-2025}}
+}
+
+% MOOSE
+% "The constitutive equations have been implemented as a material model in ... MOOSE ..."
 % See also: Pai_2024 with the same authors
 @Article{Pai_2025,
   author  = {Namit Pai and Indradev Samajdar and Anirban Patra},

doc/citations/twentyfour.bib

@@ -1,3 +1,27 @@
+% Likely MOOSE
+% See also: ZChen_2024, ZChen_2024b
+@phdthesis{ZChen_thesis,
+  author = {Zhuoting Chen},
+  school = {University of Wyoming},
+  title  = {Multiphysics modeling of frontal polymerization based manufacturing process of thermoset polymers and composites},
+  note   = {\url{https://www.proquest.com/openview/315bea30ebd6fe2932fd6fff1695fe2c}},
+  month  = dec,
+  year   = 2024
+}
+
+% libMesh
+% "For reference element quadrature rules, we used those provided by the libMesh finite element library..."
+% https://doi.org/10.14288/1.0447648
+% DOI was not working when I originally tried it.
+@phdthesis{Mirzaee_thesis,
+  author = {Ehsan Mirzaee},
+  school = {University of British Columbia},
+  title  = {A higher-order unstructured finite volume solver for three-dimensional turbulent compressible flows},
+  note   = {\url{http://hdl.handle.net/2429/90033}},
+  month  = dec,
+  year   = 2024
+}
+
 % MOOSE/Cardinal
 % "The present work will utilize the Cardinal tool ..."
 @TechReport{Okyay_2024,
@@ -27,6 +51,7 @@ @Article{Pivovar_2024
 
 % MOOSE
 % "We have implemented these equations in the ... (MOOSE) framework, ..."
+% author:chatterjee author:tonks author:gardner diffuse-interface model
 @Misc{SChatterjee_2024,
   author       = {Sourav Chatterjee and Michael Tonks and William Gardner and Marina Sessim},
   title        = {A diffuse-interface model for predicting the evolution of metallic negative electrodes and interfacial voids in solid-state batteries with homogeneous and polycrystalline solid electrolyte separators},
@@ -39,6 +64,7 @@ @Misc{SChatterjee_2024
 % MOOSE
 % "In this paper, the physical dataset is generated by solving the systems of PDEs utilising ... (Permann et al. 2020...)"
 % https://www.researchgate.net/publication/387273947_Interpretable_Solutions_for_Multi-Physics_PDEs_Using_T-NNGP
+% author:cao author:lin author:chen interpretable solutions
 @Misc{Cao_2024,
   author       = {Lulu Cao and Zexin Lin and Kay Chen Tan and Min Jiang},
   title        = {{Interpretable Solutions for Multi-Physics PDEs Using T-NNGP}},
@@ -131,6 +157,7 @@ @InProceedings{Elmeliegy_2024
 
 % MOOSE
 % "All thermal calculations were performed with the MOOSE."
+% https://inldigitallibrary.inl.gov/sites/STI/STI/Sort_134418.pdf
 @Article{GSingh_2024,
   author  = {Gyanender Singh and Jianguo Yu and Fei Xu and Peng Xu},
   title   = {{Multiscale modeling of silicon carbide cladding for nuclear applications: Thermal performance modeling}},
@@ -140,7 +167,7 @@ @Article{GSingh_2024
   volume  = 17,
   number  = 23,
   pages   = {6124 (12 pages)},
-  note    = {\url{https://doi.org/10.3390/en17236124}}
+  note    = {\url{https://doi.org/10.3390/en17236124}, Tech.~Report INL/JOU-24-81070: \url{https://www.osti.gov/biblio/2479943}}
 }
 
 % MOOSE/Griffin
@@ -157,8 +184,8 @@ @TechReport{CLee_2024b
   note        = {\url{https://doi.org/10.2172/2477141}}
 }
 
-% Likely MOOSE
-% Requested full-text on ResearchGate
+% MOOSE
+% "The system evolution Allen-Cahn and Cahn-Hilliard Equations ... were solved ... in ... (MOOSE) framework."
 % See also: Bhuiyan_2022, Bhuiyan_2023
 @Article{Bhuiyan_2024,
   author  = {M. Nabil Bhuiyan and Serge Nakhmanson and Lesley D. Frame},
@@ -1374,6 +1401,7 @@ @Article{Chae_2024
 % https://www.researchgate.net/publication/382857669_Method_for_Computer_Tomography_voxel-based_finite_element_analysis_and_validation_with_digital_image_correlation_system
 % DOI was not working when I first tried it, but the following link was:
 % https://www.sciencedirect.com/science/article/pii/S2215016124003315
+% https://doi.org/10.2139/ssrn.4863856
 @Article{DPaul_2024,
   author  = {Debangshu Paul and Zachariah Arwood and Pierre-Yves Mulon and Dayakar Penumadu and Timothy Truster},
   title   = {Method for computer tomography voxel-based finite element analysis and validation with digital image correlation system},

doc/citations/twentythree.bib

@@ -1,3 +1,43 @@
+% MOOSE/GOLEM
+% "The investigation ... using the GOLEM open-source FEM package resulted in several significant findings, ..."
+% https://www.researchgate.net/publication/388110336_Thermal-Hydro-Mechanical_coupled_numerical_analysis_of_a_faulted_zone_in_a_Quebec%27s_potential_geothermal_engineering_site
+@InProceedings{Vadiee_2023,
+  author    = {Saeed Vadiee and Biao Li and Jasmin Raymond and Mafalda Miranda},
+  title     = {{Thermal-hydro-mechanical coupled numerical analysis of a faulted zone in a Quebec's potential geothermal engineering site}},
+  booktitle = {{Proceedings of the 76th Annual Canadian Geotechnical Society Conference (GeoSaskatoon 2023)}},
+  address   = {Saskatoon, Saskatchewan, Canada},
+  month     = oct # {~1--4,},
+  year      = 2023,
+  note      = {\url{https://tinyurl.com/238bm4ut}}
+}
+
+% MOOSE
+% "In this work, we make use of 3 simulation tools: ... The Compressible Navier-Stokes Finite Volume module of MOOSE"
+% https://www.researchgate.net/publication/378654180_Simulation_of_gas_dynamics_in_the_chamber_of_Inertial_Fusion_Energy_Systems_using_state-of-the-art_numerical_libraries
+% https://doi.org/10.13182/T129-42523
+% DOI was not working when I initially tried it.
+@InProceedings{Habtemariam_2023,
+  author    = {Nahom Habtemariam and Carlo Fiorina and Sebastian Schunert and Susana Reyes},
+  title     = {{Simulation of gas dynamics in the chamber of Inertial Fusion Energy Systems using state-of-the-art numerical libraries}},
+  booktitle = {{Proceedings of the ANS Winter Conference and Expo}},
+  address   = {Washington, D. C.},
+  pages     = {276--279},
+  month     = nov # {~12--15,},
+  year      = 2023,
+  note      = {\url{https://tinyurl.com/mtzd9bps}}
+}
+
+% MOOSE
+% "MOOSE ... is used to implement the Stokes-flow simulations, ..."
+@mastersthesis{Zwarts_thesis,
+  author = {S. F. Zwarts},
+  school = {Delft University of Technology},
+  title  = {Homogenization techniques in digital rock physics},
+  note   = {\url{http://resolver.tudelft.nl/uuid:0da09ac8-4a31-411b-baa7-a88bb7d574f7}},
+  month  = may,
+  year   = 2023
+}
+
 % MOOSE
 % "The finite element method based numerical simulations were performed in ... (MOOSE) software..."
 % See also: Kunwar_2022b

doc/statistics/github_traffic_plotclones.csv

@@ -3805,4 +3805,18 @@
 2025-Jan-03,7,7
 2025-Jan-04,8,6
 2025-Jan-05,5,3
-2025-Jan-06,7,5
+2025-Jan-06,21,13
+2025-Jan-07,27,19
+2025-Jan-08,15,12
+2025-Jan-09,19,14
+2025-Jan-10,16,14
+2025-Jan-11,15,13
+2025-Jan-12,10,9
+2025-Jan-13,11,7
+2025-Jan-14,14,11
+2025-Jan-15,27,17
+2025-Jan-16,14,11
+2025-Jan-17,13,11
+2025-Jan-18,9,9
+2025-Jan-19,5,4
+2025-Jan-20,10,10