Skip to content

Commit 96131d2

Browse files
jwpetersonjwpeterson
committed
Merge remote-tracking branch 'jwpeterson/citations' into devel
2 parents ff20abc + c4d93c6 commit 96131d2

6 files changed

Lines changed: 207 additions & 65 deletions

File tree

‎doc/citations/maybe.bib‎

Lines changed: 13 additions & 14 deletions
Original file line numberDiff line numberDiff line change
@@ -2,6 +2,19 @@
22
% that they actually use libMesh, and we can't check because they are
33
% behind a paywall/not on sci-hub.
44
5+
% Maybe MOOSE
6+
% Requested full-text on ResearchGate
7+
@Article{YPeng_2025,
8+
author = {Yipeng Peng and Thanh Phan and Haibo Zhai and Liming Xiong and Xiang Zhang},
9+
title = {Multiscale computational analysis of crack initiation at the grain boundaries in hydrogen-charged bi-crystalline alpha-iron},
10+
journal = {International Journal of Plasticity},
11+
month = jan,
12+
year = 2025,
13+
pages = {104182 (xx pages)},
14+
volume = 184,
15+
note = {\url{https://doi.org/10.1016/j.ijplas.2024.104182}}
16+
}
17+
518
% Maybe MOOSE/Navier-Stokes
619
% Requested full-text on ResearchGate
720
@Article{Freile_2024b,
@@ -68,20 +81,6 @@ @Article{Bryant_2024
6881
note = {\url{https://doi.org/10.1007/s00161-024-01313-4}}
6982
}
7083

71-
% Maybe MOOSE
72-
% Requested full-text on ResearchGate
73-
@Article{Shephard_2024,
74-
author = {Mark S. Shephard and Jacob Merson and Onkar Sahni and Angel E. Castillo and Aditya Y. Joshi and Dhyanjyoti D. Nath and Usman Riaz and E. Seegyoung Seol and Cameron W. Smith and Chonglin Zhang and Mark W. Beall and Ottmar Klaas and Rocco Nastasia and Saurabh Tendulkar},
75-
title = {{Unstructured mesh tools for magnetically confined fusion system simulations}},
76-
journal = {Engineering with Computers},
77-
month = oct,
78-
year = 2024,
79-
volume = 40,
80-
number = 5,
81-
pages = {3319--3336},
82-
note = {\url{https://doi.org/10.1007/s00366-024-01976-2}}
83-
}
84-
8584
% Maybe MOOSE
8685
@InProceedings{Sevic_2024,
8786
author = {John F. Sevic},

‎doc/citations/preprints.bib‎

Lines changed: 12 additions & 47 deletions
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,16 @@
11
% Preprints
22
3+
% MOOSE
4+
% "The model is numerically implemented using ... (MOOSE)..."
5+
@Article{ZhenhuiZhang_2024,
6+
author = {Zhenhui Zhang and Renjia Zhang and Shen Sun and Min Yi },
7+
title = {A thermo-mechanically coupled phase-field fatigue fracture model},
8+
journal = {Acta Mechanica},
9+
month = dec,
10+
year = 2024,
11+
note = {\url{https://doi.org/10.1007/s00707-024-04163-y}}
12+
}
13+
314
% MOOSE/GOLEM
415
% "In this study, we utilize the GOLEM simulator ... which is built upon the ... MOOSE framework..."
516
@Article{Vadiee_2024,
@@ -12,18 +23,6 @@ @Article{Vadiee_2024
1223
note = {\url{https://doi.org/10.1016/j.rockmb.2024.100170}}
1324
}
1425

15-
% MOOSE
16-
% "All the required FEM objects and architecture are provided by MOOSE..."
17-
@Article{Guin_2024,
18-
author = {Sandip Guin and Soumya Bandyopadhyay and Saswata Bhattacharyya and Rajdip Mukherjee},
19-
title = {{Interplay between thermal and compositional gradients decides the microstructure during thermomigration: A phase-field study}},
20-
journal = {Acta Materialia},
21-
month = nov,
22-
year = 2024,
23-
pages = {120586 (xx pages)},
24-
note = {\url{https://doi.org/10.1016/j.actamat.2024.120586}, ArXiv e-print: \url{https://arxiv.org/abs/2406.00649}}
25-
}
26-
2726
% Maybe libMesh
2827
% Requested full-text on ResearchGate
2928
@Article{RXiong_2024,
@@ -48,18 +47,6 @@ @InCollection{Shimada_2025
4847
note = {\url{https://doi.org/10.1016/B978-0-443-13629-0.00037-X}}
4948
}
5049

51-
% Maybe MOOSE
52-
% Requested full-text on ResearchGate
53-
@Article{YPeng_2024,
54-
author = {Yipeng Peng and Thanh Phan and Haibo Zhai and Liming Xiong and Xiang Zhang},
55-
title = {Multiscale computational analysis of crack initiation at the grain boundaries in hydrogen-charged bi-crystalline alpha-iron},
56-
journal = {International Journal of Plasticity},
57-
month = nov,
58-
year = 2024,
59-
pages = {104182 (xx pages)},
60-
note = {\url{https://doi.org/10.1016/j.ijplas.2024.104182}}
61-
}
62-
6350
% MOOSE/HADES
6451
% "The code used for thermal-hydraulic behavior analysis is the HADES code ... based on ... (MOOSE)..."
6552
@Article{Park_2024b,
@@ -71,16 +58,6 @@ @Article{Park_2024b
7158
note = {\url{https://doi.org/10.1016/j.net.2024.11.032}}
7259
}
7360

74-
% MOOSE
75-
@Article{Rahman_2024,
76-
author = {Habib Ur Rahman and Muhammad Ilyas and Shahab Ud-Din Khan and Manzoor Ahmed and Muhammad Abdullah and Ali Hussain },
77-
title = {{Transient thermal analysis for optimal armor material in upgraded mockup for PST using MOOSE Framework}},
78-
journal = {Kerntechnik},
79-
month = nov,
80-
year = 2024,
81-
note = {\url{https://doi.org/10.1515/kern-2024-0077}}
82-
}
83-
8461
% MOOSE
8562
% "The resulting constitutive creep surrogate model is integrated within the MOOSE finite element framework..."
8663
@Article{Ruybalid_2024,
@@ -103,19 +80,6 @@ @Article{Price_2024
10380
note = {\url{https://doi.org/10.1080/00295639.2024.2409582}}
10481
}
10582

106-
% Likely MOOSE
107-
% Requested full-text on ResearchGate
108-
% See also: Bhuiyan_2022, Bhuiyan_2023
109-
@Article{Bhuiyan_2024,
110-
author = {M. Nabil Bhuiyan and Serge Nakhmanson and Lesley D. Frame},
111-
title = {Impact of secondary-phase particle morphology on grain growth in pure copper using a phase field simulation approach},
112-
journal = {Advanced Engineering Materials},
113-
month = oct,
114-
year = 2024,
115-
pages = {2400564 (xx pages)},
116-
note = {\url{https://doi.org/10.1002/adem.202400564}}
117-
}
118-
11983
% MOOSE
12084
% "FE model is coupled with phase field damage using the MOOSE multiphysics finite element framework ..."
12185
@Article{DHu_2024b,
@@ -234,6 +198,7 @@ @Article{Stauff_2024
234198
% Maybe MOOSE
235199
% https://www.researchgate.net/publication/382327116_Neural_networks_for_emergent_behavior_in_biological_microstructures
236200
% Requested full-text on ResearchGate
201+
% See also: Kumar_2024b where they use MOOSE
237202
@Article{Kumar_2024,
238203
author = {Manik Kumar and Joe Sgarrella and Christian Peco},
239204
title = {Neural networks for emergent behavior in biological microstructures},

‎doc/citations/twentyfive.bib‎

Lines changed: 26 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -1,3 +1,29 @@
1+
% MOOSE
2+
% "All the required FEM objects and architecture are provided by MOOSE..."
3+
@Article{Guin_2025b,
4+
author = {Sandip Guin and Soumya Bandyopadhyay and Saswata Bhattacharyya and Rajdip Mukherjee},
5+
title = {{Interplay between thermal and compositional gradients decides the microstructure during thermomigration: A phase-field study}},
6+
journal = {Acta Materialia},
7+
month = jan,
8+
year = 2025,
9+
volume = 284,
10+
pages = {120586 (xx pages)},
11+
note = {\url{https://doi.org/10.1016/j.actamat.2024.120586}, ArXiv e-print: \url{https://arxiv.org/abs/2406.00649}}
12+
}
13+
14+
% libMesh/IBAMR
15+
% "The IB/FE scheme is implemented in the open-source IBAMR software ... leveraging several open-source computational frameworks, including ... libMesh ..."
16+
@Article{BoWang_2025,
17+
author = {Bo Wang and Liuyang Feng and Lei Xu and Hao Gao and Xiaoyu Luo and Nan Qi},
18+
title = {Three-dimensional fluid-structure interaction modelling of the venous valve using immersed boundary/finite element method},
19+
journal = {Computers in Biology and Medicine},
20+
month = feb,
21+
year = 2025,
22+
volume = 185,
23+
pages = {109450 (10 pages)},
24+
note = {\url{https://doi.org/10.1016/j.compbiomed.2024.109450}}
25+
}
26+
127
% MOOSE/BISON
228
% "These experiments were simulated using the BISON fuel performance code..."
329
@Article{Sweet_2025,

‎doc/citations/twentyfour.bib‎

Lines changed: 140 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -1,3 +1,123 @@
1+
% MOOSE
2+
% "We solve this equation using finite elements implemented in MOOSE ..."
3+
% This looks like a conference paper, but it does not say what conference it is from.
4+
@Misc{Elmeliegy_2024,
5+
author = {Abdelrahman Elmeliegy and Matthew W. Urban and Lynn B. Munday and Murthy N. Guddati},
6+
title = {{3D} multi-plane multi-resolution shear wave elastography},
7+
month = dec,
8+
year = 2024,
9+
howpublished = {ResearchGate Preprint},
10+
note = {\url{https://doi.org/10.13140/RG.2.2.26482.41928}}
11+
}
12+
13+
% MOOSE
14+
% "All thermal calculations were performed with the MOOSE."
15+
@Article{GSingh_2024,
16+
author = {Gyanender Singh and Jianguo Yu and Fei Xu and Peng Xu},
17+
title = {{Multiscale modeling of silicon carbide cladding for nuclear applications: Thermal performance modeling}},
18+
journal = {Energies},
19+
month = dec,
20+
year = 2024,
21+
volume = 17,
22+
number = 23,
23+
pages = {6124 (12 pages)},
24+
note = {\url{https://doi.org/10.3390/en17236124}}
25+
}
26+
27+
% MOOSE/Griffin
28+
% https://www.osti.gov/biblio/2477141
29+
% Also listed as Tech. Report ANL/NSE-24/70
30+
@TechReport{CLee_2024b,
31+
author = {Changho Lee and Yeon Sang Jung and Shikhar Kumar and Namjae Choi},
32+
title = {{Improved fuel cycle capability of Griffin for fast reactor applications}},
33+
institution = {Idaho National Laboratory},
34+
day = 30,
35+
month = sep,
36+
year = 2024,
37+
number = {INL/RPT-24-80965},
38+
note = {\url{https://doi.org/10.2172/2477141}}
39+
}
40+
41+
% Likely MOOSE
42+
% Requested full-text on ResearchGate
43+
% See also: Bhuiyan_2022, Bhuiyan_2023
44+
@Article{Bhuiyan_2024,
45+
author = {M. Nabil Bhuiyan and Serge Nakhmanson and Lesley D. Frame},
46+
title = {Impact of secondary-phase particle morphology on grain growth in pure copper using a phase field simulation approach},
47+
journal = {Advanced Engineering Materials},
48+
month = dec,
49+
year = 2024,
50+
volume = 26,
51+
number = 23,
52+
pages = {2400564 (xx pages)},
53+
note = {\url{https://doi.org/10.1002/adem.202400564}}
54+
}
55+
56+
% MOOSE
57+
@Article{Rahman_2024,
58+
author = {Habib Ur Rahman and Muhammad Ilyas and Shahab Ud-Din Khan and Manzoor Ahmed and Muhammad Abdullah and Ali Hussain },
59+
title = {{Transient thermal analysis for optimal armor material in upgraded mockup for PST using MOOSE Framework}},
60+
journal = {Kerntechnik},
61+
month = dec,
62+
year = 2024,
63+
volume = 89,
64+
number = 6,
65+
pages = {728--740},
66+
note = {\url{https://doi.org/10.1515/kern-2024-0077}}
67+
}
68+
69+
% MOOSE
70+
% "Equations 1 and 3 are solved ... with the open-source finite element software MOOSE..."
71+
% author:sac-morane author:rattez "importance of precipitation"
72+
@Misc{SacMorane_2024b,
73+
author = {Alexandre Sac-Morane and Hadrien Rattez and Manolis Veveakis},
74+
title = {Importance of precipitation on the slowdown of creep behaviour induced by pressure-solution},
75+
month = dec,
76+
year = 2024,
77+
howpublished = {ArXiv e-print},
78+
note = {\url{https://arxiv.org/abs/2412.01775}}
79+
}
80+
81+
% MOOSE
82+
% "In this study, all finite element computations were conducted using the MOOSE ... framework..."
83+
% https://www.christianpeco.com/uploads/2/3/6/1/23617100/enrichedneural2024.pdf
84+
% author:barai author:liu particle-enriched composites
85+
@Misc{Barai_2024,
86+
author = {Shishir Barai and Feihong Liu and Manik Kumar and Christian Peco},
87+
title = {Neural network-driven framework for efficient microstructural modeling of particle-enriched composites},
88+
month = nov,
89+
year = 2024,
90+
howpublished = {Preprint submitted to Elsevier},
91+
note = {\url{https://tinyurl.com/ecwr4f3r}}
92+
}
93+
94+
% MOOSE
95+
% "In the final step, the trained DNN acts as a surrogate model within the FEM framework in ... (MOOSE)."
96+
% https://www.christianpeco.com/uploads/2/3/6/1/23617100/a_bio-lattice_deep_learning_framework_for_modeling_discrete_biological_materials.pdf
97+
% author:kumar author:upadhyay bio-lattice
98+
@Misc{Kumar_2024b,
99+
author = {Manik Kumar and Nilay Upadhyay and Shishir Barai and Wesley F. Reinhart and Christian Peco},
100+
title = {A bio-lattice deep learning framework for modeling discrete biological materials},
101+
month = dec,
102+
year = 2024,
103+
howpublished = {Preprint submitted to Elsevier},
104+
note = {\url{https://tinyurl.com/57atznp8}}
105+
}
106+
107+
% MOOSE/MARMOT
108+
% "... we utilize the open-source parallel MOOSE framework and MOOSE-based application, MARMOT."
109+
% https://www.osti.gov/biblio/2477153
110+
@TechReport{Biswas_2024,
111+
author = {Sudipta Biswas and Larry K. Aagesen and Pierre-Cl{\'{e}}ment A. Simon},
112+
title = {{Phase-field modeling for restructuring in the dark zone of high burnup UO$_2$}},
113+
institution = {Idaho National Laboratory},
114+
day = 30,
115+
month = sep,
116+
year = 2024,
117+
number = {INL/RPT-24-81091},
118+
note = {\url{https://doi.org/10.2172/2477153}}
119+
}
120+
1121
% MOOSE/Griffin
2122
% "The electron Boltzmann transport equation is discretized ... in the radiation transport code Griffin."
3123
@Article{Harter_2024,
@@ -83,6 +203,9 @@ @InProceedings{Gall_2024
83203

84204
% MOOSE
85205
% This article does not have a DOI as far as I can tell
206+
% https://www.osti.gov/biblio/2477721
207+
% https://inldigitallibrary.inl.gov/sites/sti/sti/Sort_90883.pdf
208+
% INL/CON-24-76614
86209
@InProceedings{Simon_2024,
87210
author = {Pierre-Cl{\'{e}}ment A. Simon and Casey T. Icenhour and Masashi Shimada and Alexander D. Lindsay and Guillaume Giudicelli and Logan H. Harbour and Derek Gaston and Mauricio E. Tano and Helen Brooks and April J. Novak and Mahmoud Eltawila and Amanda M. Lietz and Grayson Gall and Carlo Fiorina and Susana Reyes},
88211
title = {{Developing multiphysics, integrated, high-fidelity, massively parallel computational capabilities for fusion applications using MOOSE}},
@@ -125,6 +248,7 @@ @InProceedings{Giudicelli_2024e
125248

126249
% MOOSE/RACCOON
127250
% "All simulations are performed using RACCOON ... RACCOON is built on the MOOSE framework"
251+
% author:liu author:lopez-pamies dynamic fracture
128252
@Misc{YYCLiu_2024,
129253
author = {Yangyuanchen Liu and Oscar Lopez-Pamies and John E. Dolbow},
130254
title = {{On the effects of material strength in dynamic fracture: A phase-field study}},
@@ -150,6 +274,7 @@ @Article{ZChen_2024b
150274

151275
% MOOSE
152276
% "Complex arithmetic is not directly implemented in most computational simulation software, including the one employed here, ... (MOOSE, ...)"
277+
% author:shah author:guddati towards linking histological
153278
@Misc{Shah_2024,
154279
author = {Haritya Shah and Murthy Guddati},
155280
title = {{Towards linking histological changes to liver viscoelasticity: A hybrid analytical-computational micromechanics approach}},
@@ -176,6 +301,7 @@ @Article{Villada-Gil_2024
176301

177302
% libMesh
178303
% "The simulations are implemented using an in-house finite element code based on the libMesh library..."
304+
% author:xu author:cao optimal convergence doyle-fuller-newman
179305
@Misc{SXu_2024,
180306
author = {Shu Xu and Liqun Cao},
181307
title = {{Optimal convergence in finite element semi-discrete error analysis of the Doyle-Fuller-Newman model beyond 1D with a novel projection operator}},
@@ -185,6 +311,18 @@ @Misc{SXu_2024
185311
note = {\url{https://arxiv.org/abs/2411.10758}}
186312
}
187313

314+
% libMesh
315+
% "The simulations are implemented using an in-house finite element code based on the libMesh library..."
316+
% Same authors as SXu_2024 and very similar title, but seems to be a distinct paper.
317+
@Misc{SXu_2024b,
318+
author = {Shu Xu and Liqun Cao},
319+
title = {{Optimal convergence in finite element fully discrete error analysis and a novel fast solver for the Doyle-Fuller-Newman model of lithium-ion batteries}},
320+
month = nov,
321+
year = 2024,
322+
howpublished = {ArXiv e-print},
323+
note = {\url{https://arxiv.org/abs/2411.15722}}
324+
}
325+
188326
% IBAMR/libMesh
189327
% "The numerical investigations were conducted using the open-source IBAMR software..."
190328
@Article{LMChao_2024,
@@ -1446,7 +1584,7 @@ @Article{Darabi_2024
14461584

14471585
% MOOSE
14481586
% "The set of PDEs ... are solved using finite element method in ... (MOOSE) Framework..."
1449-
@Article{ZZhang_2024,
1587+
@Article{ZhijieZhang_2024,
14501588
author = {Zhijie Zhang and Hong Wei and Xing Gao and Anil Kunwar},
14511589
title = {{Thermal and compositional fields to maneuver Cu$_6$Sn$_5$ intermetallic growth on (111) nanotwinned copper substrate}},
14521590
journal = {Journal of Alloys and Compounds},
@@ -1833,7 +1971,7 @@ @Article{Prince_2024b
18331971

18341972
% MOOSE
18351973
% "This modeling framework is implemented in the open-source finite element package MOOSE..."
1836-
@Article{Singh_2024,
1974+
@Article{ASingh_2024,
18371975
author = {Avtar Singh and Jihun Song and Wei Li and Trevor Martin and Hongyi Xu and Donal P. Finegan and Juner Zhu},
18381976
title = {Microstructure-chemomechanics relations of polycrystalline cathodes in solid-state batteries},
18391977
journal = {Extreme Mechanics Letters},

‎doc/statistics/github_traffic_plotclones.csv‎

Lines changed: 8 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -3770,4 +3770,11 @@
37703770
2024-Nov-29,12,9
37713771
2024-Nov-30,12,9
37723772
2024-Dec-01,9,7
3773-
2024-Dec-02,9,4
3773+
2024-Dec-02,17,9
3774+
2024-Dec-03,22,17
3775+
2024-Dec-04,20,16
3776+
2024-Dec-05,9,6
3777+
2024-Dec-06,19,12
3778+
2024-Dec-07,15,13
3779+
2024-Dec-08,6,3
3780+
2024-Dec-09,6,5

‎doc/statistics/github_traffic_plotviews.csv‎

Lines changed: 8 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -3939,4 +3939,11 @@
39393939
2024-Nov-29,56,21
39403940
2024-Nov-30,65,13
39413941
2024-Dec-01,26,14
3942-
2024-Dec-02,123,15
3942+
2024-Dec-02,202,41
3943+
2024-Dec-03,101,38
3944+
2024-Dec-04,88,35
3945+
2024-Dec-05,151,38
3946+
2024-Dec-06,64,25
3947+
2024-Dec-07,54,14
3948+
2024-Dec-08,31,8
3949+
2024-Dec-09,26,7

0 commit comments

Comments
 (0)