Merge remote-tracking branch 'jwpeterson/citations' into devel

Author: jwpeterson

doc/citations/maybe.bib

@@ -2,6 +2,33 @@
 % that they actually use libMesh, and we can't check because they are
 % behind a paywall/not on sci-hub.
 
+% Maybe libMesh
+% Requested full-text on ResearchGate
+@Article{Poli_2025b,
+  author  = {Renato Poli and D. Nicolas Espinoza and Kamy Sepehrnoori},
+  title   = {An effective poroelastic model for fractured porous media},
+  journal = {Geomechanics for Energy and the Environment},
+  month   = dec,
+  year    = 2025,
+  volume  = 44,
+  pages   = {100772 (xx pages)},
+  note    = {\url{https://doi.org/10.1016/j.gete.2025.100772}}
+}
+
+% Maybe MOOSE
+% See also: LuLong_2025
+% Requested full-text on ResearchGate
+@Article{LuLong_2025b,
+  author  = {Lu Long and Wenxing Chen and Chuxiang Zhou and Yue Tian and Zhengguang Heng and Shengtai Zhou and Youan Shi and Yang Chen and Mei Liang and Huawei Zou and Xiao Liu and Liwei Yan},
+  title   = {Multi-physics-coupled numerical simulation and experimental validation of ablation performance in silicone-rubber-based flexible thermal protection systems},
+  journal = {Surfaces and Interfaces},
+  month   = dec,
+  year    = 2025,
+  volume  = 79,
+  pages   = {108168 (xx pages)},
+  note    = {\url{https://doi.org/10.1016/j.surfin.2025.108168}}
+}
+
 % Maybe MOOSE
 @Article{XiandongZhou_2026,
   author  = {Xiandong Zhou and Xinyue Wen and Yao Liu and Peidong Li and Haidong Fan and Qingyuan Wang},

doc/citations/preprints.bib

@@ -1,15 +1,28 @@
 % Preprints
 
-% Maybe MOOSE
-% Requested full-text on ResearchGate
-@Article{LuLong_2025b,
-  author  = {Lu Long and Wenxing Chen and Chuxiang Zhou and Yue Tian and Zhengguang Heng and Shengtai Zhou and Youan Shi and Yang Chen and Mei Liang and Huawei Zou and Xiao Liu and Liwei Yan},
-  title   = {Multi-physics-coupled numerical simulation and experimental validation of ablation performance in silicone-rubber-based flexible thermal protection systems},
-  journal = {Surfaces and Interfaces},
-  month   = nov,
+% MOOSE/DEER
+% "The CP formulations were integrated with the FE models through DEER [52], an application of ... (MOOSE) ..."
+@Article{Choi_2025,
+  author  = {J. Choi and O. Mur{\'{a}}nsky and M. C. Messner and T. Wei and T. Hu and J. J. Kruzic and M. D. McMurtrey},
+  title   = {{Multi-objective surrogate-assisted calibration of CPFEM models using macroscopic response and in situ EBSD measurements of grain reorientation trajectories}},
+  journal = {Acta Materialia},
+  month   = dec,
+  year    = 2025,
+  pages   = {121809 (50 pages)},
+  note    = {\url{https://doi.org/10.1016/j.actamat.2025.121809}}
+}
+
+% MOOSE
+% "The model was developed using ... (MOOSE) ..."
+% https://www.nature.com/articles/s41529-025-00715-2
+@Article{NChae_2025,
+  author  = {Nakkyu Chae and Seungjin Seo and Jinseop Kim},
+  title   = {{Evaluating radiation-induced corrosion depths in copper canisters of varying thicknesses for KAERI reference disposal system}},
+  journal = {npj Materials Degradation},
+  month   = dec,
   year    = 2025,
-  pages   = {108168 (xx pages)},
-  note    = {\url{https://doi.org/10.1016/j.surfin.2025.108168}}
+  pages   = {xx (51 pages)},
+  note    = {\url{https://doi.org/10.1038/s41529-025-00715-2}}
 }
 
 % BISON

doc/citations/twentyfive.bib

@@ -1,5 +1,107 @@
+% MOOSE/PorousFlow
+% "An extension of the YADE code was ... performed with the MOOSE framework ... and the built-in PorousFlow module ..."
+@Article{Fuchs_2025,
+  author  = {Marco Fuchs and Philipp Blum and Guido Bl{\"{o}}cher and Luc Scholt{\'{e}}s},
+  title   = {Permeability evolution and gouge formation during fracture shearing},
+  journal = {Geophysical Research Letters},
+  month   = dec,
+  year    = 2025,
+  volume  = 52,
+  number  = 23,
+  pages   = {e2025GL117217 (11 pages)},
+  note    = {\url{https://doi.org/10.1029/2025GL117217}}
+}
+
+% MOOSE
+% "Fracture PF modeling of GCs under uniaxial tensile loading is conducted in ... (MOOSE) ..."
+@Article{YLiao_2025,
+  author  = {Yangchao Liao and Wei Chen and Zhiping Xu},
+  title   = {Microstructure-guided glass ceramics design via physics-informed transfer learning},
+  journal = {Physical Review Materials},
+  month   = dec,
+  year    = 2025,
+  volume  = 9,
+  number  = 12,
+  pages   = {123802 (11 pages)},
+  note    = {\url{https://doi.org/10.1103/lcrf-hxh4}}
+}
+
+% MOOSE/BISON
+% "Cladding response to multiple power history simulations are investigated using the BISON code."
+@Article{Alvis_2025,
+  author  = {John Alvis and Gyanender Singh and Kyle Gamble and David Kamerman and Seokbin Seo and Katheren Nantes},
+  title   = {{Thermal mechanical assessment of a SiC-SiC-composite clad fuel pin concept in a light water reactor environment}},
+  journal = {Nuclear Engineering and Design},
+  month   = dec,
+  year    = 2025,
+  volume  = 445,
+  pages   = {114458 (xx pages)},
+  note    = {\url{https://doi.org/10.1016/j.nucengdes.2025.114458}}
+}
+
+% MOOSE
+% author:lindsay author:rhebergen hybridizable discontinuous Galerkin
+@Misc{Lindsay_2025,
+  author       = {Alexander D. Lindsay and Sander Rhebergen and Ben S. Southworth},
+  title        = {{Preconditioning a hybridizable discontinuous Galerkin method for Navier--Stokes at high Reynolds number}},
+  month        = dec,
+  year         = 2025,
+  howpublished = {ArXiv e-print},
+  note         = {\url{https://arxiv.org/abs/2512.02971}}
+}
+
+% libMesh
+% "All simulations are performed using our in-house finite element code built upon the libMesh library..."
+% author:xu author:cao parabolic hysteresis
+@Misc{SXu_2025b,
+  author       = {Shu Xu and Liqun Cao},
+  title        = {{Parabolic hysteresis problems revisited: Finite element error analysis and convergent Newton-type solvers}},
+  month        = nov,
+  year         = 2025,
+  howpublished = {ArXiv e-print},
+  note         = {\url{https://arxiv.org/abs/2511.22424}}
+}
+
+% MOOSE/SAM
+% "It utilizes an object-oriented application framework (MOOSE)..."
+@InProceedings{RHu_2025b,
+  author    = {Rui Hu and Travis Mui and Robert Salko and Tingzhou Fei and Daniel O'Grady and Ling Zou and Huihua Yang and Wei Ji},
+  title     = {{Development for integrated system-level analysis capabilities in SAM for molten salt reactors}},
+  booktitle = {{Proceedings of the 21st International Topical Meeting on Nuclear Reactor Thermal Hydraulics (NURETH-21)}},
+  address   = {Busan, Korea},
+  month     = aug # {~31--} # sep # {~5,},
+  year      = 2025,
+  note      = {\url{https://www.osti.gov/biblio/3003281}}
+}
+
+% MOOSE/BISON
+% "GA-FMR fuel performance analyzed using BISON with SiGA cladding during RIA and LOCA scenarios."
+@Article{SKLee_2025,
+  author  = {Soon K. Lee and Yinbin Miao and Aaron J. Oaks and Shipeng Shu and Abdellatif M. Yacout and Jason Rizk and John Bolin and Christopher Ellis and Hangbok Choi},
+  title   = {Transient fuel performance analysis for the preliminary fuel concept of general atomics fast modular reactor},
+  journal = {Nuclear Engineering and Design},
+  month   = dec,
+  year    = 2025,
+  volume  = 445,
+  pages   = {114494 (xx pages)},
+  note    = {\url{https://doi.org/10.1016/j.nucengdes.2025.114494}}
+}
+
+% MOOSE
+% "Three coupled equations are solved with a finite element solver MOOSE..."
+% author:sac-morane author:ioannidou
+@Misc{SacMorane_2025b,
+  author       = {Alexandre Sac-Morane and Katerina Ioannidou and Manolis Veveakis and Hadrien Rattez},
+  title        = {Predicting cement microstructure and mechanical properties in hydrating cement paste with a phase-field model},
+  month        = dec,
+  year         = 2025,
+  howpublished = {ArXiv e-print},
+  note         = {\url{https://arxiv.org/abs/2512.01407}}
+}
+
 % MOOSE
 % "We solve the system of partial differential equations ... using ... (MOOSE) ..."
+% author:bandyopadhyay author:chatterjee magneto-mechanical
 @Misc{Bandyopadhyay_2025b,
   author       = {Soumya Bandyopadhyay and Sourav Chatterjee and Dallas R. Trinkle and Richard G. Hennig and Victoria Miller and Michael S. Kesler and Michael R. Tonks},
   title        = {{Effect of magneto-mechanical synergism in the process-structure correlation in Fe-C alloys: A phase-field modeling approach}},
@@ -38,6 +140,7 @@ @InProceedings{Baldini_2025
 
 % MOOSE
 % "In addition, a synthetic dataset is generated using the high-fidelity finite element code MOOSE..."
+% author:tristani author:arson active learning
 @Misc{Tristani_2025,
   author       = {Alec Tristani and Chlo{\'{e}} Arson},
   title        = {Active learning with physics-informed neural networks for optimal sensor placement in deep tunneling through transversely isotropic elastic rocks},
@@ -49,6 +152,7 @@ @Misc{Tristani_2025
 
 % MOOSE
 % "We extend a hybrid multiscale framework that couples cluster dynamics (Xolotl) with a phase-field model (MARMOT)..."
+% author:chatterjee author:muntaha grain structure fission gas hybrid multiscale
 @Misc{Chatterjee_2025b,
   author       = {Sourav Chatterjee and Md. Ali Muntaha and Sophie Blondel and David Andersson and Brian D. Wirth and Michael R. Tonks},
   title        = {{Influence of temperature, initial grain-boundary bubble density and grain structure on fission gas behaviour in UO$_2$: A 3D hybrid multiscale study}},
@@ -159,7 +263,7 @@ @TechReport{SJeon_2025
 % Cardinal in title.
 % https://www.osti.gov/biblio/2997990
 @TechReport{Saini_2025,
-  author      = {Nadish Saini and Maximiliano German Dalinger and Kalin R. Kiesling and April Novak and Dillon Shaver and Yiqi Yu },
+  author      = {Nadish Saini and Maximiliano German Dalinger and Kalin R. Kiesling and April Novak and Dillon Shaver and Yiqi Yu},
   title       = {{Progress Towards NQA-1 for Cardinal in FY25}},
   institution = {Argonne National Laboratory},
   day         = 29,
@@ -172,7 +276,7 @@ @TechReport{Saini_2025
 % MOOSE
 % "...the equations of the CP model ... were implemented in ... MOOSE..."
 @Article{Pelegatti_2025,
-  author  = {Marco Pelegatti and Enrico Salvati and Nicol{\'{o}} Grilli },
+  author  = {Marco Pelegatti and Enrico Salvati and Nicol{\'{o}} Grilli},
   title   = {{Crystal plasticity model for cyclic hardening-softening of 316L steel produced by laser-powder bed fusion including the role of sub-grain structures}},
   journal = {Materials Science and Engineering: A},
   month   = nov,
@@ -354,20 +458,6 @@ @Article{Harter_2025
   note    = {\url{https://doi.org/10.3389/fnuen.2025.1628866}}
 }
 
-% MOOSE
-% "The model was built using the MOOSE framework ..."
-% See also: Chae_2024
-@Article{Chae_2025,
-  author  = {Nakkyu Chae and Seongkoo Hong and Richard I. Foster and Pilhyeon Ju and Jinseop Kim and Samuel Park and Sungyeol Choi},
-  title   = {An experimental and modeling analysis of copper corrosion potentials for pitting susceptibility assessment in deep geological repositories},
-  journal = {Progress in Nuclear Energy},
-  month   = jan,
-  year    = 2026,
-  volume  = 191,
-  pages   = {106075 (13 pages)},
-  note    = {\url{https://doi.org/10.1016/j.pnucene.2025.106075}}
-}
-
 % MOOSE
 % "..., injection-driven fault dynamics were simulated using a poroelastic model implemented in ... (MOOSE) ..."
 % author:song author:liu author:arson seismicity migration illuminate
@@ -793,7 +883,7 @@ @Article{LZou_2025b
 }
 
 % MOOSE/SAM
-@Article{RHui_2025,
+@Article{RHu_2025,
   author  = {Rui Hu and Ling Zou and Daniel O'Grady and Travis Mui and Zhiee Jhia Ooi and Guojun Hu and Eric Cervi and Gang Yang and David Andr{\v{s}} and Alex Lindsay and Cody Permann and Robert Salko and Quan Zhou and Lambert Fick and Alexander Heald and Haihua Zhao},
   title   = {{SAM: A modern system code for advanced non-LWR safety analysis}},
   journal = {Nuclear Technology},
@@ -1006,7 +1096,7 @@ @Article{Biswas_2025
 % "Equation 2 and the mechanical equilibrium equation were solved in ... MOOSE."
 % MOOSE is cited in the "Supporting Information" section of the paper.
 @Article{JijieHuang_2025,
-  author  = {Jijie Huang and Bin Zhang and Danny Hermawan and Alfredo Sanjuan and Benson Kunhung Tsai and Jialong Huang and R. Edwin Garc{\'{i}}a and Haiyan Wang },
+  author  = {Jijie Huang and Bin Zhang and Danny Hermawan and Alfredo Sanjuan and Benson Kunhung Tsai and Jialong Huang and R. Edwin Garc{\'{i}}a and Haiyan Wang},
   title   = {Complex oxide-metal hybrid metamaterials with integrated magnetic and plasmonic non-noble metal nanostructures},
   journal = {Advanced Functional Materials},
   month   = jul,
@@ -1332,14 +1422,16 @@ @Misc{DZhang_2025
 
 % MOOSE
 % "Order parameter ... is computed by ... solving Equations 6 and 7 with ... (MOOSE) ..."
-% author:sevic author:juston morphologically self-consistent memristive
-@Misc{Sevic_2025,
-  author       = {John F. Sevic and Ambroise Juston and Nobuhiko P. Kobayashi},
-  title        = {A morphologically self-consistent phase field model for the computational study of memristive thin film current-voltage hysteresis},
-  month        = jun,
-  year         = 2025,
-  howpublished = {ArXiv e-print},
-  note         = {\url{https://arxiv.org/abs/2506.17421}}
+@Article{Sevic_2025,
+  author  = {John F. Sevic and Ambroise Juston and Nobuhiko P. Kobayashi},
+  title   = {A morphologically self-consistent phase field model for the computational study of memristive thin film current-voltage hysteresis},
+  journal = {Applied Physics Letters},
+  month   = dec,
+  year    = 2025,
+  volume  = 127,
+  number  = 22,
+  pages   = {223503 (xx pages)},
+  note    = {\url{https://doi.org/10.1063/5.0290458}, ArXiv e-print: \url{https://arxiv.org/abs/2506.17421}}
 }
 
 % MOOSE/SAM
@@ -1661,7 +1753,7 @@ @InProceedings{Batikh_2025
 % MOOSE/MOSKITO
 % "MOSKITO ..., a finite element code developed within the MOOSE framework, has proven to be a powerful tool for this purpose ..."
 @InProceedings{Esmaeilpour_2025,
-  author    = {Morteza Esmaeilpour and Christopher Schifflechner and Nicolas Rangel Jurado and Tsubasa Onishi and Daniel Pokras and Jasper {de Reus} and Sebastian K{\"{o}}hlert and Martin O. Saar },
+  author    = {Morteza Esmaeilpour and Christopher Schifflechner and Nicolas Rangel Jurado and Tsubasa Onishi and Daniel Pokras and Jasper {de Reus} and Sebastian K{\"{o}}hlert and Martin O. Saar},
   title     = {{A case study of using sCO2 equipment in different geothermal energy systems: AGS, EGS and CPG}},
   booktitle = {{Proceedings of the 6th Edition of the European Conference on Supercritical CO$_2$ (sCO$_2$) for Energy Systems}},
   address   = {Delft, Netherlands},
@@ -1975,7 +2067,7 @@ @Article{HuZhang_2025
 % "The open-source, parallel-processing capable finite element package MOOSE/REDBACK was used as the main FEA platform..."
 % This is a "Nature Portfolio journal"
 @Article{Lindqwister_2025,
-  author  = {W. Lindqwister and J. Peloquin and L. E. Dalton and K. Gall and M. Veveakis },
+  author  = {W. Lindqwister and J. Peloquin and L. E. Dalton and K. Gall and M. Veveakis},
   title   = {Predicting compressive stress-strain behavior of elasto-plastic porous media via morphology-informed neural networks},
   journal = {Communications Engineering},
   month   = apr,
@@ -2666,18 +2758,6 @@ @Article{Mostafavi_2025
   note    = {\url{https://doi.org/10.1016/j.jcp.2025.113755}, SSRN e-print: https://doi.org/10.2139/ssrn.4890110}
 }
 
-% MOOSE
-% "The ... problem ... has been implemented ... within ... MFM-FM ... based on the MOOSE framework ..."
-% author:yang author:chen author:foster multiphysics simulations microstructure
-@Misc{Kuhn_2025,
-  author       = {Patrick K{\"{u}}hn and Yangyiwei Yang and Guanyu Chen and Shanelle N. Foster and Herbert Egger and Bai-Xiang Xu},
-  title        = {Multiphysics simulations of microstructure influence on hysteresis and eddy current losses of electrical steel},
-  month        = feb,
-  year         = 2025,
-  howpublished = {ArXiv e-print},
-  note         = {\url{https://arxiv.org/abs/2502.01559}}
-}
-
 % MOOSE
 % "Complex arithmetic is not directly implemented in most computational simulation software, including the one employed here, ... (MOOSE, ...)"
 @Article{Shah_2025,

doc/citations/twentyfour.bib

@@ -137,7 +137,7 @@ @phdthesis{Kubo_thesis
 % MOOSE
 % "The strategy for STEP [Spherical Tokamak for Energy Production] has thus been to use a pragmatic compromise of the two approaches, by developing a suite of applications within MOOSE..."
 @Article{Davis_2024,
-  author  = {Andrew Davis and Chris Waldon and Stuart I. Muldrew and Bhavin S. Patel and Patricia Verrier and Thomas R. Barrett and Gerasimos A. Politis },
+  author  = {Andrew Davis and Chris Waldon and Stuart I. Muldrew and Bhavin S. Patel and Patricia Verrier and Thomas R. Barrett and Gerasimos A. Politis},
   title   = {Digital: accelerating the pathway},
   journal = {Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences},
   month   = oct,
@@ -378,7 +378,7 @@ @Article{Bhuiyan_2024
 
 % MOOSE
 @Article{Rahman_2024,
-  author  = {Habib Ur Rahman and Muhammad Ilyas and Shahab Ud-Din Khan and Manzoor Ahmed and Muhammad Abdullah and Ali Hussain },
+  author  = {Habib Ur Rahman and Muhammad Ilyas and Shahab Ud-Din Khan and Manzoor Ahmed and Muhammad Abdullah and Ali Hussain},
   title   = {{Transient thermal analysis for optimal armor material in upgraded mockup for PST using MOOSE Framework}},
   journal = {Kerntechnik},
   month   = dec,
@@ -2152,7 +2152,7 @@ @Article{ASingh_2024
 % "... a multiphysics reference plant model for the ABTR was developed using the ... (MOOSE)-based Comprehensive Reactor Analysis Bundle (CRAB) ..."
 % https://www.osti.gov/biblio/2341323
 @TechReport{Terlizzi_2024,
-  author      = {Stefano Terlizzi and Namjae Choi and Jackson R. Harter and Ishita Trivedi and Travis Mui and Javier Ortensi },
+  author      = {Stefano Terlizzi and Namjae Choi and Jackson R. Harter and Ishita Trivedi and Travis Mui and Javier Ortensi},
   title       = {Sodium-cooled fast reactor reference plant model},
   institution = {Idaho National Laboratory},
   day         = 29,
@@ -2867,7 +2867,7 @@ @Article{Barros_2024
 % MOOSE
 % "This study uses the open-source code TIGER ... which is based on ... MOOSE"
 @Article{Stricker_2024,
-  author  = {Kai Stricker and Robert Egert and Eva Schill and Thomas Kohl },
+  author  = {Kai Stricker and Robert Egert and Eva Schill and Thomas Kohl},
   title   = {{Risk of surface movements and reservoir deformation for high-temperature aquifer thermal energy storage (HT-ATES)}},
   journal = {Geothermal Energy},
   month   = jan,

doc/citations/twentysix.bib

@@ -1,3 +1,30 @@
+% MOOSE
+% "The model was built using the MOOSE framework ..."
+% See also: Chae_2024
+@Article{Chae_2026b,
+  author  = {Nakkyu Chae and Seongkoo Hong and Richard I. Foster and Pilhyeon Ju and Jinseop Kim and Samuel Park and Sungyeol Choi},
+  title   = {An experimental and modeling analysis of copper corrosion potentials for pitting susceptibility assessment in deep geological repositories},
+  journal = {Progress in Nuclear Energy},
+  month   = jan,
+  year    = 2026,
+  volume  = 191,
+  pages   = {106075 (13 pages)},
+  note    = {\url{https://doi.org/10.1016/j.pnucene.2025.106075}}
+}
+
+% MOOSE
+% "The ... problem ... has been implemented ... within ... MFM-FM ... based on the MOOSE framework ..."
+@Article{Kuhn_2026,
+  author  = {Patrick K{\"{u}}hn and Yangyiwei Yang and Guanyu Chen and Shanelle N. Foster and Herbert Egger and Bai-Xiang Xu},
+  title   = {{Microstructural influence on hysteresis and eddy-current losses of additively manufactured electrical steel: A multiphysical approach}},
+  journal = {Computational Materials Science},
+  month   = feb,
+  year    = 2026,
+  volume  = 263,
+  pages   = {114408 (12 pages)},
+  note    = {\url{https://doi.org/10.1016/j.commatsci.2025.114408}, ArXiv e-print: \url{https://arxiv.org/abs/2502.01559}}
+}
+
 % MOOSE
 % "The finite element modeling of the diffusion fracture problem is solved implicitly using MOOSE..."
 @Article{Sarmah_2026,

doc/citations/twentythree.bib

@@ -2681,7 +2681,7 @@ @Article{Brunetto_2023
 
 % Likely MOOSE
 @InProceedings{Cumbunga_2023c,
-  author    = {Judice Cumbunga and Said Abboudi and Dominique Chamoret and Sudipta Biswas and Samuel Gomes },
+  author    = {Judice Cumbunga and Said Abboudi and Dominique Chamoret and Sudipta Biswas and Samuel Gomes},
   title     = {Numerical modeling of the solid-state sintering process by coupling the thermal and microstructural fields},
   booktitle = {{Advances in Thermal Science and Energy}},
   editor    = {Fazia Ali-Toudert and Abdeslam Draoui and Kamel Halouani and Mohammed Hasnaoui and Abdelmajid Jemni and Loun{\`{e}}s Tadrist},