loculus/.pre-commit-config.yaml at main · loculus-project/loculus · GitHub

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repos:
  - repo: https://github.com/astral-sh/ruff-pre-commit
    # Ruff version.
    rev: v0.14.2
    hooks:
      # Run the linter and fix issues.
      - id: ruff-check
        args: [--fix]
        files: ^ena-submission/
      # Run lint but only fix auto-fixable issues.
      - id: ruff-check
        args: [--fix-only]
        files: ^preprocessing/nextclade/
      # Run the formatter.
      - id: ruff-format
        files: ^ena-submission/|^preprocessing/nextclade/
  - repo: local
    hooks:
      - id: prettier-values-schema
        name: prettier (values.schema.json)
        entry: npx prettier@3.6.2 --write
        language: system
        files: ^kubernetes/loculus/values\.schema\.json$
      - id: helm-lint
        name: helm lint
        entry: bash
        args:
          - -c
          - |
            set -euo pipefail
            helm lint kubernetes/loculus -f kubernetes/loculus/values.yaml
            helm lint kubernetes/loculus -f kubernetes/loculus/values.yaml -f kubernetes/loculus/values_e2e_and_dev.yaml
            helm lint kubernetes/loculus -f kubernetes/loculus/values.yaml -f kubernetes/loculus/values_preview_server.yaml
        language: system
        pass_filenames: false
        files: ^kubernetes/loculus/