README.md

Multi-Centre, Multi-Vendor & Multi-Disease Cardiac Image Segmentation Challenge (M&Ms)

Preprocessing

Read the preprocessing readme on how to preprocess the data.

Training

The following command can be used to train/fine-tune the model on the dataset (please adjust the model.ckpt_path and data.dir accordingly):

# from scratch
mnms_clf_train data.dir=~/.cache/cinema_datasets/mnms/processed
# fine-tune
mnms_clf_train data.dir=~/.cache/cinema_datasets/mnms/processed model.ckpt_path=

Evaluation

The following command can be used to evaluate the model (please adjust the model.ckpt_path accordingly):

mnms_clf_eval --data_dir ~/.cache/cinema_datasets/mnms/processed --ckpt_path