Software stack upgrade on GPU machine

Author: willend

tools/Python/mctest/mcstas-test/McStas_8GPU/mccode_config.json

@@ -20,16 +20,16 @@
   "compilation": {
     "CFLAGS": "-g -lm -O2 -std=c99",
     "NEXUSFLAGS": "-Wl,-rpath,GETPATH(miniconda3/lib) -LGETPATH(miniconda3/lib) -DUSE_NEXUS -lNeXus -IGETPATH(miniconda3/include/nexus)",
-    "MPIFLAGS": "-DUSE_MPI -lmpi -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/25.3/comm_libs/12.8/openmpi4/openmpi-4.1.5/lib -L,/opt/nvidia/hpc_sdk/Linux_x86_64/25.3/comm_libs/12.8/openmpi4/openmpi-4.1.5/lib -I/opt/nvidia/hpc_sdk/Linux_x86_64/25.3/comm_libs/12.8/openmpi4/openmpi-4.1.5/include",
+    "MPIFLAGS": "-DUSE_MPI -lmpi -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/25.5/comm_libs/12.9/openmpi4/openmpi-4.1.5/lib -L,/opt/nvidia/hpc_sdk/Linux_x86_64/25.5/comm_libs/12.9/openmpi4/openmpi-4.1.5/lib -I/opt/nvidia/hpc_sdk/Linux_x86_64/25.5/comm_libs/12.9/openmpi4/openmpi-4.1.5/include",
     "OACCFLAGS": "-fast -Minfo=accel -acc=gpu -gpu=mem:managed -DOPENACC",
     "GSLFLAGS": "-Wl,-rpath,GETPATH(miniconda3/lib) -LGETPATH(miniconda3/lib) -lgsl -lgslcblas -IGETPATH(miniconda3/include)",
     "NCRYSTALFLAGS": "CMD(ncrystal-config --show buildflags)",
     "MCPLFLAGS": "-Wl,-rpath,CMD(mcpl-config --show libdir) -Wl,CMD(mcpl-config --show libpath) -ICMD(mcpl-config --show includedir)",
     "XRLFLAGS": "",
     "CC": "gcc",
     "OACC": "nvc",
-    "MPICC": "/opt/nvidia/hpc_sdk/Linux_x86_64/25.3/comm_libs/12.8/openmpi4/openmpi-4.1.5/bin/mpicc",
-    "MPIRUN": "/opt/nvidia/hpc_sdk/Linux_x86_64/25.3/comm_libs/12.8/openmpi4/openmpi-4.1.5/bin/mpirun",
+    "MPICC": "/opt/nvidia/hpc_sdk/Linux_x86_64/25.5/comm_libs/12.9/openmpi4/openmpi-4.1.5/bin/mpicc",
+    "MPIRUN": "/opt/nvidia/hpc_sdk/Linux_x86_64/25.5/comm_libs/12.9/openmpi4/openmpi-4.1.5/bin/mpirun",
     "MPINODES": "8"
   },
   "platform": {

tools/Python/mctest/mcxtrace-test/McXtrace_8GPU/mccode_config.json

@@ -20,16 +20,16 @@
   "compilation": {
     "CFLAGS": "-g -lm -O2 -std=c99",
     "NEXUSFLAGS": "-Wl,-rpath,GETPATH(miniconda3/lib) -LGETPATH(miniconda3/lib) -DUSE_NEXUS -lNeXus -IGETPATH(miniconda3/include/nexus)",
-    "MPIFLAGS": "-DUSE_MPI -lmpi -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/25.3/comm_libs/12.8/openmpi4/openmpi-4.1.5/lib -L,/opt/nvidia/hpc_sdk/Linux_x86_64/25.3/comm_libs/12.8/openmpi4/openmpi-4.1.5/lib -I/opt/nvidia/hpc_sdk/Linux_x86_64/25.3/comm_libs/12.8/openmpi4/openmpi-4.1.5/include",
+    "MPIFLAGS": "-DUSE_MPI -lmpi -Wl,-rpath,/opt/nvidia/hpc_sdk/Linux_x86_64/25.5/comm_libs/12.9/openmpi4/openmpi-4.1.5/lib -L,/opt/nvidia/hpc_sdk/Linux_x86_64/25.5/comm_libs/12.9/openmpi4/openmpi-4.1.5/lib -I/opt/nvidia/hpc_sdk/Linux_x86_64/25.5/comm_libs/12.9/openmpi4/openmpi-4.1.5/include",
     "OACCFLAGS": "-fast -Minfo=accel -acc=gpu -gpu=mem:managed -DOPENACC",
     "GSLFLAGS": "-Wl,-rpath,GETPATH(miniconda3/lib) -LGETPATH(miniconda3/lib) -lgsl -lgslcblas -IGETPATH(miniconda3/include)",
     "NCRYSTALFLAGS": "",
     "MCPLFLAGS": "-Wl,-rpath,CMD(mcpl-config --show libdir) -Wl,CMD(mcpl-config --show libpath) -ICMD(mcpl-config --show includedir)",
     "XRLFLAGS": "-Wl,-rpath,GETPATH(miniconda3/lib) -LGETPATH(miniconda3/lib) -lxrl -IGETPATH(miniconda3/include)",
     "CC": "gcc",
     "OACC": "nvc",
-    "MPICC": "/opt/nvidia/hpc_sdk/Linux_x86_64/25.3/comm_libs/12.8/openmpi4/openmpi-4.1.5/bin/mpicc",
-    "MPIRUN": "/opt/nvidia/hpc_sdk/Linux_x86_64/25.3/comm_libs/12.8/openmpi4/openmpi-4.1.5/bin/mpirun",
+    "MPICC": "/opt/nvidia/hpc_sdk/Linux_x86_64/25.5/comm_libs/12.9/openmpi4/openmpi-4.1.5/bin/mpicc",
+    "MPIRUN": "/opt/nvidia/hpc_sdk/Linux_x86_64/25.5/comm_libs/12.9/openmpi4/openmpi-4.1.5/bin/mpirun",
     "MPINODES": "8"
   },
   "platform": {