=============================== warnings summary ===============================
.venv/lib/python3.10/site-packages/nmdc_schema/nmdc.py:36
/Users/MAM/Documents/gitrepos/sample-annotator/.venv/lib/python3.10/site-packages/nmdc_schema/nmdc.py:36: DeprecationWarning: The LinkML dataclass extension patch is deprecated and will be removed in a future release.
If you're currently using Python < 3.13, where this patch still applies, you should:
• Upgrade your LinkML tooling to version >= 1.9.0 (which no longer needs this patch), OR
• Migrate to Pydantic models if you're using LinkML's generated classes at runtime.
from linkml_runtime.utils.dataclass_extensions_376 import dataclasses_init_fn_with_kwargs
.venv/lib/python3.10/site-packages/quantulum3/classifier.py:12
/Users/MAM/Documents/gitrepos/sample-annotator/.venv/lib/python3.10/site-packages/quantulum3/classifier.py:12: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
import pkg_resources
.venv/lib/python3.10/site-packages/pkg_resources/__init__.py:3147
/Users/MAM/Documents/gitrepos/sample-annotator/.venv/lib/python3.10/site-packages/pkg_resources/__init__.py:3147: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('sphinxcontrib')`.
Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
declare_namespace(pkg)
.venv/lib/python3.10/site-packages/linkml/generators/pydanticgen/template.py:552: 12 warnings
/Users/MAM/Documents/gitrepos/sample-annotator/.venv/lib/python3.10/site-packages/linkml/generators/pydanticgen/template.py:552: PydanticDeprecatedSince211: Accessing the 'model_fields' attribute on the instance is deprecated. Instead, you should access this attribute from the model class. Deprecated in Pydantic V2.11 to be removed in V3.0.
imports=imports, **{k: getattr(self, k, None) for k in self.model_fields if k != "imports"}
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
======================= 9 passed, 15 warnings in 54.26s ========================
