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NAMESPACE
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executable file
·53 lines (52 loc) · 1.43 KB
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# Generated by roxygen2: do not edit by hand
S3method(DoPhenoGraph,Seurat)
S3method(DoPhenoGraph,SingleCellExperiment)
export("%>%")
export(DoForceAtlas2)
export(DoPHATE)
export(DoPaCMAP)
export(DoPhenoGraph)
export(DoUMAP)
export(DoopenTSNE)
export(DooptSNE)
export(PAGA)
export(PAGAplot)
export(openTSNE)
export(pacmap)
export(phate)
export(phenograph)
export(umap)
importFrom(Matrix,Matrix)
importFrom(Seurat,"Idents<-")
importFrom(Seurat,AddMetaData)
importFrom(Seurat,CreateDimReducObject)
importFrom(Seurat,DefaultAssay)
importFrom(Seurat,DietSeurat)
importFrom(Seurat,Embeddings)
importFrom(SingleCellExperiment,"reducedDim<-")
importFrom(SingleCellExperiment,reducedDim)
importFrom(SingleCellExperiment,reducedDimNames)
importFrom(SummarizedExperiment,"colData<-")
importFrom(SummarizedExperiment,colData)
importFrom(dplyr,across)
importFrom(dplyr,filter)
importFrom(dplyr,mutate)
importFrom(ggplot2,aes)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_segment)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_manual)
importFrom(ggpubr,theme_pubr)
importFrom(glue,glue)
importFrom(magrittr,"%>%")
importFrom(magrittr,set_colnames)
importFrom(magrittr,set_rownames)
importFrom(parallel,detectCores)
importFrom(reticulate,import)
importFrom(reticulate,py_module_available)
importFrom(rlang,"%||%")
importFrom(s2a,convert_to_anndata)
importFrom(tibble,as_tibble)
importFrom(tibble,tibble)