diff --git a/pyproject.toml b/pyproject.toml
index 3324a35..39c2e78 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,5 +1,5 @@
 [build-system]
-requires = ["setuptools>=61.0", "wheel"]
+requires = ["setuptools>=82.0.1", "wheel"]
 build-backend = "setuptools.build_meta"
 
 [project]
@@ -25,9 +25,9 @@ classifiers = [
     "Programming Language :: Python :: 3.12",
 ]
 dependencies = [
-    "scyjava>=1.12.1",
-    "pyimagej>=1.7.0",
-    "JPype1>=1.5.0",
+    "scyjava>=1.12.4",
+    "pyimagej>=1.8.0",
+    "JPype1>=1.7.0",
     "numpy>=2.3.3",
     "matplotlib>=3.10.7",
     "xarray>=2025.10.1",
@@ -37,16 +37,16 @@ dependencies = [
 # Enhanced display and conversion features
 display = [
     "pandas>=2.3.3",
-    "networkx>=3.0",
+    "networkx>=3.2.1",
     "cairosvg>=2.8.2",
-    "PyMuPDF>=1.26.3",
+    "PyMuPDF>=1.26.5",
 ]
 # Interactive GUI features
 gui = [
     "pandasgui>=0.2.15",
     "ipykernel>=7.1.0",
     "pyobjc-core>=11.1; sys_platform == 'darwin'",
-    "pyobjc-framework-cocoa>=11.1; sys_platform == 'darwin'",
+    "pyobjc-framework-cocoa>=12.0; sys_platform == 'darwin'",
 ]
 # Optional Java auto-install support
 java = [
@@ -54,26 +54,26 @@ java = [
 ]
 # Optional OME-Zarr support
 zarr = [
-    "zarr>=2.10.0",
-    "fsspec>=2023.1.0",
+    "zarr>=2.18.2",
+    "fsspec>=2025.10.0",
 ]
 # All optional features
 all = [
     "pandas>=2.3.3",
-    "networkx>=3.0",
+    "networkx>=3.2.1",
     "cairosvg>=2.8.2",
-    "PyMuPDF>=1.26.3",
+    "PyMuPDF>=1.26.5",
     "pandasgui>=0.2.15",
     "ipykernel>=7.1.0",
     "pyobjc-core>=11.1; sys_platform == 'darwin'",
-    "pyobjc-framework-cocoa>=11.1; sys_platform == 'darwin'",
+    "pyobjc-framework-cocoa>=12.0; sys_platform == 'darwin'",
     "install-jdk>=1.1.0",
-    "zarr>=2.10.0",
-    "fsspec>=2023.1.0",
+    "zarr>=2.18.2",
+    "fsspec>=2025.10.0",
 ]
 # Development dependencies
 dev = [
-    "pytest>=6.0",
+    "pytest>=8.4.2",
     "pytest-cov",
     "black",
     "flake8",
@@ -82,9 +82,9 @@ dev = [
 ]
 # Documentation dependencies
 docs = [
-    "sphinx>=5.0,<8.0",
+    "sphinx>=7.4.7,<8.0",
     "sphinx-design",
-    "myst-nb>=0.15.0,<1.4.0",
+    "myst-nb>=1.3.0,<1.4.0",
     "sphinx-copybutton",
     "pydata-sphinx-theme",
 ]