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Expand file tree Collapse file tree Original file line number Diff line number Diff line change @@ -101,8 +101,8 @@ effort to translate the original Sorting routine for real Schur forms `SRSchur`_
101101into `Python code `_,
102102M. Weber and `Alexander Sikorski `_ for pointing us to `SLEPc `_ for sorted partial Schur decompositions,
103103and A. Sikorski for supplying us with an `code example `_ and guidance how to interface SLEPc in Python.
104- The development of *pyGPCCA * started at the beginning of 2020 in a fork of ` MSMTools `_,
105- since at this time it was planned to integrate GPCCA into it .
104+ The development of *pyGPCCA * started - based on the original ` GPCCA `_ program written in MATLAB - at the beginning of
105+ 2020 in a fork of ` MSMTools `_, since it was planned to integrate GPCCA into MSMTools at this time .
106106Due to this, some similarities in structure and code (indicated were evident) can be found.
107107Futher the utility functions found in `pygpcca/utils/_utils.py `_ originate from MSMTools.
108108
@@ -116,6 +116,7 @@ Futher the utility functions found in `pygpcca/utils/_utils.py`_ originate from
116116.. _`Alexander Sikorski` : https://www.zib.de/members/sikorski
117117.. _`SLEPc` : https://slepc.upv.es/
118118.. _`code example` : https://github.com/zib-cmd/cmdtools/blob/1c6b6d8e1c35bb487fcf247c5c1c622b4b665b0a/src/cmdtools/analysis/pcca.py#L64
119+ .. _`GPCCA` : https://github.com/msmdev/gpcca
119120.. _`MSMTools` : https://github.com/markovmodel/msmtools
120121.. _`pygpcca/utils/_utils.py` : https://github.com/msmdev/pyGPCCA/blob/main/pygpcca/utils/_utils.py
121122
Original file line number Diff line number Diff line change @@ -9,8 +9,8 @@ effort to translate the original Sorting routine for real Schur forms `SRSchur`_
99into `Python code `_,
1010M. Weber and `Alexander Sikorski `_ for pointing us to `SLEPc `_ for sorted partial Schur decompositions,
1111and A. Sikorski for supplying us with an `code example `_ and guidance how to interface SLEPc in Python.
12- The development of *pyGPCCA * started at the beginning of 2020 in a fork of ` MSMTools `_,
13- since at this time it was planned to integrate GPCCA into it .
12+ The development of *pyGPCCA * started - based on the original ` GPCCA `_ program written in MATLAB - at the beginning of
13+ 2020 in a fork of ` MSMTools `_, since it was planned to integrate GPCCA into MSMTools at this time .
1414Due to this, some similarities in structure and code (indicated were evident) can be found.
1515Futher the utility functions found in `pygpcca/utils/_utils.py `_ originate from MSMTools.
1616
@@ -24,5 +24,6 @@ Futher the utility functions found in `pygpcca/utils/_utils.py`_ originate from
2424.. _`Alexander Sikorski` : https://www.zib.de/members/sikorski
2525.. _`SLEPc` : https://slepc.upv.es/
2626.. _`code example` : https://github.com/zib-cmd/cmdtools/blob/1c6b6d8e1c35bb487fcf247c5c1c622b4b665b0a/src/cmdtools/analysis/pcca.py#L64
27+ .. _`GPCCA` : https://github.com/msmdev/gpcca
2728.. _`MSMTools` : https://github.com/markovmodel/msmtools
2829.. _`pygpcca/utils/_utils.py` : https://github.com/msmdev/pyGPCCA/blob/main/pygpcca/utils/_utils.py
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