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Prepare for 0.1.0 Release
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‎codex-process-feasibility/README.md‎

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This process supports the following query types within the transferred Library resource:
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|Type | Description | Mime Type |
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|-----|-------------|-----------|
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| CQL | Standardized query format. See https://cql.hl7.org/ for more information. | `text/cql` |
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| Structured Query | Internal query representation within the CODEX project based on the JSON format. | `application/sq+json` |
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| Type | Description | Mime Type |
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|-------------------|------------------------------------------------------------------------------------------------|----------------------------|
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| CQL | Standardized query format. See https://cql.hl7.org/ for more information. | `text/cql` |
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| Structured Query | Internal query representation within the CODEX project based on the JSON format. | `application/sq+json` |
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| FHIR Search Query | Standardized FHIR search query. See https://www.hl7.org/fhir/search.html for more information. | `application/x-fhir-query` |
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**Note**: _Although a FHIR search query can be transferred to the process no result will be calculated!_
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The BPMN model of the `execute` process is straightforward and already explained in detail above.
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## Configuration
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Besides the [common DSF settings controlled by different environment variables][8], there are some additional ones specific to this process:
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| EnvVar | Description | Default |
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|----------------------------------------------------------------------------------------------|-----------------------------------------------------------------------------------------------------------------------------------------------|---------|
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| DE_NETZWERK_UNIVERSITAETSMEDIZIN_CODEX_PROCESSES_FEASIBILITY_FLARE_WEBSERVICE_BASEURL | Base URL to a Flare instance. Only required when evaluation strategy is set to `structured-query`. | |
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| DE_NETZWERK_UNIVERSITAETSMEDIZIN_CODEX_PROCESSES_FEASIBILITY_FLARE_WEBSERVICE_CONNECTTIMEOUT | Timeout in ms when trying to connect to a Flare instance. | `2000` |
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| DE_NETZWERK_UNIVERSITAETSMEDIZIN_CODEX_PROCESSES_FEASIBILITY_EVALUATION_STRATEGY | How the feasibility shall be evaluated. Possible values are `cql` and `structured-query`. When using the latter a Flare instance is required. | `cql` |
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| DE_NETZWERK_UNIVERSITAETSMEDIZIN_CODEX_PROCESSES_FEASIBILITY_EVALUATION_OBFUSCATE | Whether the feasibility results shall be obfuscated. | `true` |
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| DE_NETZWERK_UNIVERSITAETSMEDIZIN_CODEX_PROCESSES_FEASIBILITY_STORE_URL | Base URL to a FHIR store used for feasibility evaluation. Only required when evaluation strategy is set to `cql`. | `foo` |
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## Compatibility
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This version of the process is compatible with the following components:
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| Component | Compatible Version(s) |
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|-----------|-----------------------|
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| DSF FHIR | `0.5.x` |
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| DSF BPE | `0.5.x` |
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| Blaze | `>= 0.12` |
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| Flare | `1.0` |
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**Note:** Flare got rewritten. Only the [new project][9] is supported.
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[1]: <https://www.hl7.org/FHIR/task.html>
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[2]: <https://www.hl7.org/fhir/measure.html>
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[3]: <https://www.hl7.org/fhir/library.html>
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[4]: <https://www.hl7.org/fhir/bundle.html>
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[5]: <https://www.hl7.org/fhir/operation-measure-evaluate-measure.html>
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[6]: <https://www.hl7.org/fhir/measurereport.html>
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[7]: <https://en.wikipedia.org/wiki/Business_Process_Model_and_Notation>
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[8]: <https://github.com/highmed/highmed-dsf/wiki/DSF-0.5.4-Configuration-Parameters#dsf-bpe>
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[9]: <https://github.com/rwth-imi/flare-query>

‎codex-process-feasibility/pom.xml‎

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<dependency>
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<groupId>org.highmed.dsf</groupId>
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<artifactId>dsf-bpe-process-base</artifactId>
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<version>0.5.2</version>
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<version>0.5.4</version>
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<scope>provided</scope>
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</dependency>
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<dependency>
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<dependency>
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<groupId>org.highmed.dsf</groupId>
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<artifactId>dsf-fhir-validation</artifactId>
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<version>0.5.2</version>
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<version>0.5.4</version>
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<scope>test</scope>
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</dependency>
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</dependencies>

‎codex-process-feasibility/src/main/java/de/netzwerk_universitaetsmedizin/codex/processes/feasibility/FlareWebserviceClientImpl.java‎

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public int requestFeasibility(byte[] structuredQuery) throws IOException, InterruptedException {
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var req = HttpRequest.newBuilder()
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.POST(ofByteArray(structuredQuery))
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.setHeader("Content-Type", "codex/json")
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.setHeader("Accept", "internal/json")
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.uri(flareBaseUrl.resolve("query-sync"))
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.setHeader("Content-Type", "application/json")
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.setHeader("Accept-Encoding", "CSQ")
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.uri(flareBaseUrl.resolve("/query/execute"))
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.build();
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var res = httpClient.send(req, ofString());

‎codex-processes-ap2-docker-test-setup/db/init-db.sh‎

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#!/bin/bash
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#!/usr/bin/env bash
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set -e
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psql -v ON_ERROR_STOP=1 --username "$POSTGRES_USER" --dbname "$POSTGRES_DB" <<-EOSQL

‎codex-processes-ap2-docker-test-setup/docker-compose.yml‎

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# ---- ZARS - FHIR Inbox ----------------------------------------------------
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zars-fhir-app:
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image: ghcr.io/highmed/fhir:0.5.2
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image: ghcr.io/highmed/fhir:0.5.4
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restart: on-failure
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secrets:
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# ---- ZARS - BPE -----------------------------------------------------------
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zars-bpe-app:
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image: ghcr.io/highmed/bpe:0.5.2
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image: ghcr.io/highmed/bpe:0.5.4
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restart: on-failure
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secrets:
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# ---- DIC-1 - FHIR ---------------------------------------------------------
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dic-1-fhir-app:
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image: ghcr.io/highmed/fhir:0.5.2
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image: ghcr.io/highmed/fhir:0.5.4
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restart: on-failure
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secrets:
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# ---- DIC-1 - BPE ----------------------------------------------------------
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dic-1-bpe-app:
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image: ghcr.io/highmed/bpe:0.5.2
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image: ghcr.io/highmed/bpe:0.5.4
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secrets:
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# ---- DIC-2 - FHIR ---------------------------------------------------------
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dic-2-fhir-app:
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image: ghcr.io/highmed/fhir:0.5.2
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image: ghcr.io/highmed/fhir:0.5.4
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secrets:
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# ---- DIC-2 - BPE ----------------------------------------------------------
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dic-2-bpe-app:
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image: ghcr.io/highmed/bpe:0.5.2
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image: ghcr.io/highmed/bpe:0.5.4
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secrets:
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- db_liquibase.password

‎codex-processes-ap2-tools/pom.xml‎

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<dependency>
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<groupId>org.highmed.dsf</groupId>
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<artifactId>dsf-fhir-rest-adapter</artifactId>
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<version>0.5.2</version>
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<version>0.5.4</version>
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</dependency>
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<dependency>
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<groupId>org.highmed.dsf</groupId>
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<artifactId>dsf-fhir-server</artifactId>
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<version>0.5.2</version>
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<version>0.5.4</version>
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</dependency>
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</dependencies>

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