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openMINDS pipeline
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‎openminds/base.py‎

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"""
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Base classes for openMINDS
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This module contains base classes that define interfaces
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and contain code common to sub-classes, to avoid code duplication.
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# Copyright (c) 2023 openMetadataInitiative
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"""

‎openminds/latest/chemicals/__init__.py‎

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from .chemical_mixture import ChemicalMixture
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from .chemical_substance import ChemicalSubstance
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from .product_source import ProductSource
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from .amount_of_chemical import AmountOfChemical
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from .product_source import ProductSource
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from .chemical_substance import ChemicalSubstance

‎openminds/latest/computation/__init__.py‎

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from .simulation import Simulation
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from .launch_configuration import LaunchConfiguration
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from .data_copy import DataCopy
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from .local_file import LocalFile
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from .workflow_recipe import WorkflowRecipe
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from .workflow_execution import WorkflowExecution
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from .optimization import Optimization
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from .simulation import Simulation
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from .validation_test_version import ValidationTestVersion
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from .generic_computation import GenericComputation
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from .software_agent import SoftwareAgent
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from .environment import Environment
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from .visualization import Visualization
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from .model_validation import ModelValidation
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from .workflow_recipe_version import WorkflowRecipeVersion
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from .local_file import LocalFile
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from .data_copy import DataCopy
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from .workflow_execution import WorkflowExecution
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from .environment import Environment
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from .generic_computation import GenericComputation
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from .validation_test_version import ValidationTestVersion
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from .hardware_system import HardwareSystem
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from .validation_test import ValidationTest
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from .workflow_recipe_version import WorkflowRecipeVersion
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from .data_analysis import DataAnalysis
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from .workflow_recipe import WorkflowRecipe
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from .launch_configuration import LaunchConfiguration
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from .hardware_system import HardwareSystem

‎openminds/latest/controlled_terms/__init__.py‎

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from .criteria_quality_type import CriteriaQualityType
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from .preparation_type import PreparationType
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from .software_feature import SoftwareFeature
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from .file_usage_role import FileUsageRole
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from .handedness import Handedness
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from .setup_type import SetupType
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from .action_status_type import ActionStatusType
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from .product_accessibility import ProductAccessibility
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from .molecular_entity import MolecularEntity
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from .organ import Organ
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from .experimental_approach import ExperimentalApproach
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from .genetic_strain_type import GeneticStrainType
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from .biological_order import BiologicalOrder
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from .olfactory_stimulus_type import OlfactoryStimulusType
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from .cell_type import CellType
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from .organism_substance import OrganismSubstance
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from .service import Service
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from .file_repository_type import FileRepositoryType
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from .annotation_criteria_type import AnnotationCriteriaType
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from .device_type import DeviceType
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from .stimulation_approach import StimulationApproach
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from .learning_resource_type import LearningResourceType
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from .uberon_parcellation import UBERONParcellation
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from .stimulation_technique import StimulationTechnique
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from .visual_stimulus_type import VisualStimulusType
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from .anatomical_axes_orientation import AnatomicalAxesOrientation
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from .biological_process import BiologicalProcess
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from .species import Species
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from .atlas_type import AtlasType
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from .patch_clamp_variation import PatchClampVariation
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from .educational_level import EducationalLevel
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from .electrical_stimulus_type import ElectricalStimulusType
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from .tissue_sample_attribute import TissueSampleAttribute
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from .contribution_type import ContributionType
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from .terminology import Terminology
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from .qualitative_overlap import QualitativeOverlap
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from .biological_sex import BiologicalSex
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from .age_category import AgeCategory
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from .anatomical_identification_type import AnatomicalIdentificationType
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from .organ import Organ
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from .gustatory_stimulus_type import GustatoryStimulusType
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from .annotation_criteria_type import AnnotationCriteriaType
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from .chemical_mixture_type import ChemicalMixtureType
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from .tissue_sample_type import TissueSampleType
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from .tactile_stimulus_type import TactileStimulusType
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from .cranial_window_construction_type import CranialWindowConstructionType
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from .colormap import Colormap
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from .semantic_data_type import SemanticDataType
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from .subcellular_entity import SubcellularEntity
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from .visual_stimulus_type import VisualStimulusType
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from .anatomical_plane import AnatomicalPlane
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from .olfactory_stimulus_type import OlfactoryStimulusType
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from .operating_system import OperatingSystem
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from .species import Species
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from .language import Language
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from .programming_language import ProgrammingLanguage
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from .age_category import AgeCategory
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from .patch_clamp_variation import PatchClampVariation
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from .technique import Technique
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from .measured_signal_type import MeasuredSignalType
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from .atlas_type import AtlasType
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from .molecular_entity import MolecularEntity
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from .auditory_stimulus_type import AuditoryStimulusType
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from .semantic_data_type import SemanticDataType
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from .measured_quantity import MeasuredQuantity
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from .experimental_approach import ExperimentalApproach
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from .file_repository_type import FileRepositoryType
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from .biological_order import BiologicalOrder
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from .data_type import DataType
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from .stimulation_approach import StimulationApproach
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from .difference_measure import DifferenceMeasure
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from .operating_device import OperatingDevice
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from .model_abstraction_level import ModelAbstractionLevel
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from .subcellular_entity import SubcellularEntity
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from .disease_model import DiseaseModel
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from .organism_substance import OrganismSubstance
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from .service import Service
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from .organism_system import OrganismSystem
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from .learning_resource_type import LearningResourceType
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from .terminology import Terminology
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from .contribution_type import ContributionType
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from .annotation_type import AnnotationType
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from .cell_type import CellType
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from .auditory_stimulus_type import AuditoryStimulusType
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from .preparation_type import PreparationType
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from .unit_of_measurement import UnitOfMeasurement
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from .product_accessibility import ProductAccessibility
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from .disease import Disease
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from .analysis_technique import AnalysisTechnique
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from .biological_sex import BiologicalSex
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from .meta_data_model_type import MetaDataModelType
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from .organism_system import OrganismSystem
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from .disease_model import DiseaseModel
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from .laterality import Laterality
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from .stimulation_technique import StimulationTechnique
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from .type_of_uncertainty import TypeOfUncertainty
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from .term_suggestion import TermSuggestion
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from .subject_attribute import SubjectAttribute
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from .ethics_assessment import EthicsAssessment
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from .device_type import DeviceType
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from .biological_process import BiologicalProcess
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from .cell_culture_type import CellCultureType
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from .gustatory_stimulus_type import GustatoryStimulusType
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from .tissue_sample_type import TissueSampleType
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from .meta_data_model_type import MetaDataModelType
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from .chemical_mixture_type import ChemicalMixtureType
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from .programming_language import ProgrammingLanguage
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from .handedness import Handedness
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from .colormap import Colormap
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from .measured_signal_type import MeasuredSignalType
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from .model_abstraction_level import ModelAbstractionLevel
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from .disease import Disease
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from .technique import Technique
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from .data_type import DataType
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from .tissue_sample_attribute import TissueSampleAttribute
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from .file_bundle_grouping import FileBundleGrouping
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from .laterality import Laterality
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from .language import Language
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from .file_usage_role import FileUsageRole
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from .analysis_technique import AnalysisTechnique
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from .software_feature import SoftwareFeature
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from .criteria_quality_type import CriteriaQualityType
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from .cranial_window_reinforcement_type import CranialWindowReinforcementType
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from .cell_culture_type import CellCultureType
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from .term_suggestion import TermSuggestion
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from .breeding_type import BreedingType
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from .model_scope import ModelScope
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from .software_application_category import SoftwareApplicationCategory
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from .operating_system import OperatingSystem
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from .setup_type import SetupType
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from .breeding_type import BreedingType
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from .qualitative_overlap import QualitativeOverlap
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from .difference_measure import DifferenceMeasure
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from .optical_stimulus_type import OpticalStimulusType
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from .type_of_uncertainty import TypeOfUncertainty
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from .genetic_strain_type import GeneticStrainType
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from .educational_level import EducationalLevel
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from .tactile_stimulus_type import TactileStimulusType
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from .ethics_assessment import EthicsAssessment
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from .operating_device import OperatingDevice

‎openminds/latest/core/__init__.py‎

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from .digital_identifier import (
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IdentifiersDotOrgID,
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HANDLE,
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ISBN,
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RORID,
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ISSN,
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GRIDID,
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IdentifiersDotOrgID,
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RRID,
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DOI,
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StockNumber,
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RRID,
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GRIDID,
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HANDLE,
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ORCID,
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RORID,
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SWHID,
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)
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from .miscellaneous import (
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QuantitativeValueRange,
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QuantitativeValue,
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ResearchProductGroup,
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QuantitativeValueArray,
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Comment,
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WebResource,
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Funding,
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)
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from .products import (
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Model,
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WebServiceVersion,
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Software,
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Dataset,
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MetaDataModel,
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Setup,
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ModelVersion,
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SoftwareVersion,
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DatasetVersion,
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Project,
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MetaDataModelVersion,
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WebService,
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ISBN,
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)
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from .research import (
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Protocol,
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SubjectGroup,
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Subject,
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NumericalProperty,
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TissueSampleCollectionState,
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SubjectGroupState,
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PropertyValueList,
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StringProperty,
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TissueSample,
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CustomPropertySet,
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SubjectState,
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Configuration,
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TissueSampleCollection,
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Strain,
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PropertyValueList,
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StringProperty,
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SubjectGroupState,
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Subject,
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TissueSampleState,
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ProtocolExecution,
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SubjectGroup,
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TissueSample,
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CustomPropertySet,
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BehavioralProtocol,
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Protocol,
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TissueSampleCollection,
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TissueSampleCollectionState,
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NumericalProperty,
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)
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from .miscellaneous import (
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ResearchProductGroup,
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Funding,
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QuantitativeValueArray,
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QuantitativeValueRange,
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WebResource,
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QuantitativeValue,
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Comment,
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)
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from .data import (
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Copyright,
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FileRepositoryStructure,
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License,
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FileRepository,
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Measurement,
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License,
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ContentTypePattern,
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FilePathPattern,
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FileArchive,
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FileBundle,
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FileArchive,
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Copyright,
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Hash,
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ContentType,
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FileRepository,
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FileRepositoryStructure,
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FilePathPattern,
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File,
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ServiceLink,
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ContentType,
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)
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from .actors import Person, Consortium, AccountInformation, Organization, ContactInformation, Affiliation, Contribution
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from .products import (
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ModelVersion,
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MetaDataModel,
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WebServiceVersion,
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SoftwareVersion,
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Software,
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Project,
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Dataset,
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MetaDataModelVersion,
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WebService,
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Setup,
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Model,
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DatasetVersion,
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)
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from .actors import Person, Contribution, Consortium, Affiliation, AccountInformation, ContactInformation, Organization

‎openminds/latest/core/actors/__init__.py‎

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from .person import Person
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from .contribution import Contribution
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from .consortium import Consortium
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from .affiliation import Affiliation
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from .account_information import AccountInformation
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from .organization import Organization
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from .contact_information import ContactInformation
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from .affiliation import Affiliation
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from .contribution import Contribution
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from .organization import Organization

‎openminds/latest/core/data/__init__.py‎

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from .copyright import Copyright
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from .file_repository_structure import FileRepositoryStructure
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from .license import License
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from .file_repository import FileRepository
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from .measurement import Measurement
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from .license import License
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from .content_type_pattern import ContentTypePattern
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from .file_path_pattern import FilePathPattern
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from .file_archive import FileArchive
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from .file_bundle import FileBundle
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from .file_archive import FileArchive
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from .copyright import Copyright
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from .hash import Hash
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from .content_type import ContentType
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from .file_repository import FileRepository
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from .file_repository_structure import FileRepositoryStructure
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from .file_path_pattern import FilePathPattern
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from .file import File
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from .service_link import ServiceLink
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from .content_type import ContentType

‎openminds/latest/core/digital_identifier/__init__.py‎

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from .identifiers_dot_org_id import IdentifiersDotOrgID
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from .handle import HANDLE
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from .isbn import ISBN
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from .rorid import RORID
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from .issn import ISSN
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from .gridid import GRIDID
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from .identifiers_dot_org_id import IdentifiersDotOrgID
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from .rrid import RRID
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from .doi import DOI
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from .stock_number import StockNumber
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from .rrid import RRID
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from .gridid import GRIDID
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from .handle import HANDLE
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from .orcid import ORCID
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from .rorid import RORID
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from .swhid import SWHID
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from .isbn import ISBN

‎openminds/latest/core/miscellaneous/__init__.py‎

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from .quantitative_value_range import QuantitativeValueRange
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from .quantitative_value import QuantitativeValue
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from .research_product_group import ResearchProductGroup
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from .funding import Funding
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from .quantitative_value_array import QuantitativeValueArray
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from .comment import Comment
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from .quantitative_value_range import QuantitativeValueRange
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from .web_resource import WebResource
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from .funding import Funding
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from .quantitative_value import QuantitativeValue
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from .comment import Comment

‎openminds/latest/core/products/__init__.py‎

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from .model import Model
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from .web_service_version import WebServiceVersion
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from .software import Software
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from .dataset import Dataset
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from .meta_data_model import MetaDataModel
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from .setup import Setup
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from .model_version import ModelVersion
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from .meta_data_model import MetaDataModel
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from .web_service_version import WebServiceVersion
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from .software_version import SoftwareVersion
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from .dataset_version import DatasetVersion
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from .software import Software
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from .project import Project
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from .dataset import Dataset
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from .meta_data_model_version import MetaDataModelVersion
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from .web_service import WebService
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from .setup import Setup
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from .model import Model
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from .dataset_version import DatasetVersion

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