require scprep v1.2 (#397)

scottgigante · scottgigante-immunai · web-flow · commit 2c2d7853f266 · 2022-05-11T16:03:53.000-04:00
Co-authored-by: Scott Gigante &lt;scott.gigante@immunai.com&gt;
diff --git a/openproblems/tasks/denoising/methods/alra.R b/openproblems/tasks/denoising/methods/alra.R
@@ -1,4 +1,4 @@
-library(SingleCellExperiment)
+glibrary(SingleCellExperiment)
 library(Matrix)
 source("https://raw.githubusercontent.com/KlugerLab/ALRA/master/alra.R")
 library(rsvd)
diff --git a/setup.py b/setup.py
@@ -7,8 +7,7 @@
     "numpy>=1.17.0",
     "scikit-learn>=0.19.1",
     "anndata>=0.7.5,<0.8",
-    "scprep @ git+https://github.com/scottgigante-immunai/"
-    "scprep@scottgigante/rfunction/traceback",
+    "scprep>=1.2.0",
     "scipy",
     "scanpy>=1.6",
     "louvain>=0.7",

Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-library(SingleCellExperiment)`
	`1`	`+glibrary(SingleCellExperiment)`
`2`	`2`	`library(Matrix)`
`3`	`3`	`source("https://raw.githubusercontent.com/KlugerLab/ALRA/master/alra.R")`
`4`	`4`	`library(rsvd)`