Rename items (#932)

* more renames

* rename dir

Author: rcannood

…ets/loaders/scrnaseq/op3/config.vsh.yaml …crnaseq/openproblems_op3/config.vsh.yamlsrc/datasets/loaders/scrnaseq/op3/config.vsh.yaml renamed to src/datasets/loaders/scrnaseq/openproblems_op3/config.vsh.yaml src/datasets/loaders/scrnaseq/op3/config.vsh.yaml renamed to src/datasets/loaders/scrnaseq/openproblems_op3/config.vsh.yaml

@@ -26,7 +26,7 @@ output_hvg: force_null
 output_knn: force_null
 publish_dir: s3://openproblems-data/resources/datasets
 HERE
-<
+
 cat > "/tmp/nextflow.config" << 'HERE'
 process {
   withName:'.*publishStatesProc' {
@@ -36,20 +36,20 @@ process {
 }
 HERE
 
-# tw launch https://github.com/openproblems-bio/openproblems.git \
-#  --revision main_build \
-#  --pull-latest \
-#  --main-script target/nextflow/datasets/workflows/scrnaseq/process_openproblems_op3/main.nf \
-#  --workspace 53907369739130 \
-#  --params-file "$params_file" \
-#  --labels op3,dataset_loader \
-#  --config /tmp/nextflow.config
+tw launch https://github.com/openproblems-bio/openproblems.git \
+ --revision build/main \
+ --pull-latest \
+ --main-script target/nextflow/datasets/workflows/scrnaseq/process_openproblems_op3/main.nf \
+ --workspace 53907369739130 \
+ --params-file "$params_file" \
+ --labels op3,dataset_loader \
+ --config /tmp/nextflow.config
 
-set -x
-export AWS_PROFILE=op
-nextflow run . \
-  -main-script target/nextflow/datasets/workflows/scrnaseq/process_openproblems_op3/main.nf \
-  -profile docker \
-  -resume \
-  -params-file "$params_file" \
-  -config /tmp/nextflow.config
+# set -x
+# export AWS_PROFILE=op
+# nextflow run . \
+#   -main-script target/nextflow/datasets/workflows/scrnaseq/process_openproblems_op3/main.nf \
+#   -profile docker \
+#   -resume \
+#   -params-file "$params_file" \
+#   -config /tmp/nextflow.config