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bug in the tf binding fixed
1 parent 8341cbb commit c57cc7f

5 files changed

Lines changed: 5 additions & 3 deletions

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src/metrics/tf_binding/helper.py

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@@ -153,5 +153,6 @@ def main(par):
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final_result[f'{gt}_tfb_f1'] = f1_gt
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result_df = pd.DataFrame([final_result])
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# print(result_df)
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return result_df

src/metrics/tf_binding/script.py

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@@ -43,5 +43,5 @@
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dataset_id = ad.read_h5ad(par['evaluation_data'], backed='r').uns['dataset_id']
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method_id = ad.read_h5ad(par['prediction'], backed='r').uns['method_id']
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format_save_score(df, dataset_id, method_id, par['score'])
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format_save_score(df, method_id, dataset_id, par['score'])
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print('Completed', flush=True)

src/utils/config.py

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@@ -93,6 +93,7 @@
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'norman': ['regression', 'ws_distance', 'tf_binding', 'sem', 'gs_recovery'],
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'nakatake': ['regression', 'sem', 'gs_recovery'],
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'op': ['regression', 'vc', 'rc_tf_act', 'tf_binding', 'sem', 'gs_recovery'],
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# 'op': ['regression', 'tf_binding', 'gs_recovery'],
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'300BCG': ['regression', 'vc', 'rc_tf_act', 'tf_binding', 'sem', 'gs_recovery'],
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'ibd_uc': ['regression', 'vc', 'tf_binding', 'sem', 'gs_recovery'],
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'ibd_cd': ['regression', 'vc', 'tf_binding', 'sem', 'gs_recovery'],

src/utils/dataset_config.env

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@@ -19,7 +19,7 @@ METRICS_replogle="regression,ws_distance,tf_recovery,tf_binding,sem,gs_recovery"
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METRICS_adamson="regression,tf_binding,sem,gs_recovery"
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METRICS_norman="regression,ws_distance,tf_binding,sem,gs_recovery"
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METRICS_nakatake="regression,sem,gs_recovery"
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METRICS_op="gs_recovery,tf_binding"
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METRICS_op="tf_binding,gs_recovery"
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METRICS_300BCG="regression,vc,rc_tf_act,tf_binding,sem,gs_recovery"
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METRICS_ibd_uc="regression,vc,tf_binding,sem,gs_recovery"
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METRICS_ibd_cd="regression,vc,tf_binding,sem,gs_recovery"

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