initial tacco config

Author: LeonHafner

src/methods_cell_type_annotation/tacco/config.vsh.yaml

@@ -0,0 +1,38 @@
+name: tacco
+label: "Tacco"
+summary: "Annotate cell types using Tacco"
+description: "Annotate cell types using Tacco"
+links:
+  documentation: "https://simonwm.github.io/tacco/"
+  repository: "https://github.com/simonwm/tacco"
+references:
+  doi: "10.1038/s41587-023-01657-3"
+
+arguments:
+  - name: --anndata_spatial
+    type: file
+    required: true
+    direction: input
+  - name: --anndata_single_cell
+    type: file
+    required: true
+    direction: input
+  - name: --celltype_key
+    type: string
+    default: cell_type
+    direction: input
+  - name: --output
+    type: file
+    default: spatial_with_celltypes.h5ad
+    direction: output
+
+resources:
+  - type: python_script
+    path: script.py
+
+engines:
+  - type: native
+
+runners:
+  - type: executable
+  - type: nextflow