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1 parent f00a6ce commit b77bd96Copy full SHA for b77bd96
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src/methods_transcript_assignment/pciSeq_transcript_assignment/script.py
@@ -58,15 +58,9 @@
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# Assign cell ids to transcripts
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print('Assigning transcripts to cell ids', flush=True)
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-y_coords = transcripts.y.compute().to_numpy(dtype=np.int64)
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-x_coords = transcripts.x.compute().to_numpy(dtype=np.int64)
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-
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-#test floats
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y_coords = transcripts.y.compute().to_numpy()
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x_coords = transcripts.x.compute().to_numpy()
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-print(y_coords)
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#Added for pciSeq
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#TODO this will immediately break when the name of the gene isn't feature_name
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transcripts_dataframe = sdata[par['transcripts_key']].compute()[['feature_name']]
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