change default params

Author: LeonHafner

src/methods_cell_type_annotation/moscot/config.vsh.yaml

@@ -11,14 +11,14 @@ references:
   doi: "10.1038/s41586-024-08453-2"
 
 arguments:
-# TODO: alpha check range [0.9, 0.8, 0.7]
-# TODO: tau_a=tau_b check range [0.1,0.2,0.3]
-# TODO: rank depends on data set size, rank=5000 for 300k cells and down to rank=500 minimal
+# TODO: alpha check range [0.7, 0.8, 0.9]
+# TODO: tau_a=tau_b check range [0.1, 0.2, 0.3] (seems only to work with tau=1 on our data)
+# TODO: rank depends on data set size, rank=5000 for 300k cells and down to rank=500 minimum (seems only to work with rank=-1 on our data)
   - name: --alpha
     required: false
     direction: input
     type: double
-    default: 0.5
+    default: 0.8
   - name: --tau
     required: false
     direction: input

src/methods_cell_type_annotation/moscot/script.py

@@ -14,8 +14,8 @@
    'output': 'spatial_with_celltypes.h5ad',
    'celltype_key': 'cell_type',
    'alpha': 0.8,
-   'tau': 0.2,
-   'rank': 5000,
+   'tau': 1.0,
+   'rank': -1,
    'mapping_mode': 'max',
  }
  meta = {