task_predict_modality/src/data_processors/process_dataset/config.vsh.yaml at 0ae1f75702f838b17be3286e2576180916c246ca · openproblems-bio/task_predict_modality · GitHub

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name: "process_dataset"
namespace: "data_processors"
argument_groups:
  - name: Inputs
    arguments:
      - name: "--input_mod1"
        __merge__: "/src/api/file_common_dataset_mod1.yaml"
        required: true
        direction: input
      - name: "--input_mod2"
        __merge__: "/src/api/file_common_dataset_mod2.yaml"
        direction: input
        required: true
  - name: Outputs
    arguments:
      - name: "--output_train_mod1"
        __merge__: /src/api/file_train_mod1.yaml
        direction: output
        required: true
      - name: "--output_train_mod2"
        __merge__: /src/api/file_train_mod2.yaml
        direction: output
        required: true
      - name: "--output_test_mod1"
        __merge__: /src/api/file_test_mod1.yaml
        direction: "output"
        required: true
      - name: "--output_test_mod2"
        __merge__: /src/api/file_test_mod2.yaml
        direction: output
        required: true
  - name: Parameters
    arguments:
      - name: "--dataset_id"
        type: "string"
        description: "New dataset ID"
        required: false
      - name: "--swap"
        type: "boolean"
        description: "Swap mod1 and mod2"
        default: false
resources:
  - type: r_script
    path: script.R
engines:
  - type: docker
    image: openproblems/base_r:1
runners:
  - type: executable
  - type: nextflow
    directives:
      label: [hightime, highmem, highcpu]
test_resources:
  - type: python_script
    path: /common/component_tests/run_and_check_output.py
  - path: /resources_test/common/openproblems_neurips2021/bmmc_cite
    dest: resources_test/common/openproblems_neurips2021/bmmc_cite