Merge remote-tracking branch 'origin/main' into feature/no-ref/add-sp-sim-results

Author: rcannood

.github/workflows/quarto_netlify.yml

@@ -66,6 +66,12 @@ jobs:
       - name: Render with Quarto
         shell: bash -l {0}  
         run: |
+          # touch results/*/library.bib files
+          for task in results/*; do
+            touch "$task/library.bib"
+          done
+
+          # render
           quarto render --profile evaluate_code
       
       ## push actions

documentation/create_task/getting_started.qmd

@@ -17,7 +17,7 @@ Please check the OpenProblems [organisation](https://github.com/openproblems-bio
 
 ## Step 2: Reach out to the OpenProblems team
 
-If not, reach out to the OpenProblems team by creating a new task proposal. This can be done by creating a new issue in the OpenProblems repository using the [new task proposal template](https://github.com/openproblems-bio/openproblems/issues/new?assignees=&labels=task&projects=&template=new_task.yml). You can also reach out through [Discord](https://discord.gg/hDE5bYEcHF).
+If not, reach out to the OpenProblems team by creating a new task proposal. This can be done by creating a new issue in the OpenProblems repository using the [new task proposal template](https://github.com/openproblems-bio/openproblems/issues/new?assignees=&labels=task&projects=&template=new_task.yml). You can also reach out through [Discord](https://discord.gg/PEmRN4tjvE).
 
 This collaborative process will help ensure that your task is well-defined, relevant, and compatible with the OpenProblems framework. Additionally, it informs others of your ongoing work in this area and establishes a foundation for potential collaboration. Check out [some examples](https://github.com/openproblems-bio/openproblems/labels/task) by filtering on the 'task' label on GitHub.
 

events/2021-03_jamboree/index.qmd

@@ -66,8 +66,8 @@ To encourage communication and collaboration during the event, we’re going to
 Before the jamboree:  
 
 1. If you don’t already have one, create a Discord account
-2. [Download Discord desktop client](https://discord.com) (required for video calling)
-3. [Join our server](https://discord.gg/sDE7cM4PN7)
+2. [Download Discord desktop client](https://discord.gg/PEmRN4tjvE) (required for video calling)
+3. [Join our server](https://discord.gg/PEmRN4tjvE)
 4. Introduce yourself with a 👋in the #introductions channel
 
 ## Introductory videos

events/2021-09_neurips/documentation/about/discord.qmd

@@ -3,6 +3,6 @@ title: "Discord"
 order: 50
 ---
 
-If you ever have any questions, please feel free to reach out on the [Open Problems Discord Server](https://discord.gg/hDE5bYEcHF).
+If you ever have any questions, please feel free to reach out on the [Open Problems Discord Server](https://discord.gg/PEmRN4tjvE).
 
 You can find channels for the competition in the category "NeurIPS 2021 Competition".

events/2021-09_neurips/documentation/about/getting_started.qmd

@@ -11,6 +11,6 @@ To get started:
 4.  Implement your method and [generate a submission](/events/2021-09_neurips/documentation/submission/development_process.qmd)!
 
 
-If you ever have any questions, please feel free to reach out on the [Open Problems Discord Server](https://discord.gg/hDE5bYEcHF).
+If you ever have any questions, please feel free to reach out on the [Open Problems Discord Server](https://discord.gg/PEmRN4tjvE).
 
 You can find channels for the competition with the prefix #neurips2021

events/2021-09_neurips/documentation/index.qmd

@@ -9,4 +9,4 @@ order: 1
 
 Welcome to the documentation site for the multimodal single-cell data integration 2021 NeurIPS competition! This site is home to all the documentation you need to get started competing in the competition. On the table of contents to the left, you'll see information about the competition, the tasks, and the submission process.
 
-If you ever have any questions, please feel free to reach out on [the Open Problems Discord Server](https://discord.gg/hDE5bYEcHF).
+If you ever have any questions, please feel free to reach out on [the Open Problems Discord Server](https://discord.gg/PEmRN4tjvE).

events/2021-09_neurips/documentation/submission/quickstart.qmd

@@ -95,4 +95,4 @@ To upload the submission, you have two options:
 Once your method is submitted, you can navigate to the [My Submissions](https://eval.ai/web/challenges/challenge-page/1111/my-submission) tab for the competition and select the phase that matches your recent submission. Here you will find a table that lists each submission you've uploaded for a given phase. Once the "Status" column is marked "Finished" you can view the `results.json` file that provides the method performance. Note that it might take up to 5 minutes for your submission to update from "Running" to "Finished", and that your submission might have to wait in a queue for an undetermined amount of time depending on the number of submissions being run on the submission server.
 
 ## Encountering issues?
-If you encounter a problem, please read the [FAQ](/events/2021-09_neurips/documentation/submission/faq.qmd) to see whether a solution is already described. If you can't find a solution to your problem, please reach out on the competition [Discord](https://discord.gg/Q3RKGMGD3E) server. See the `#troubleshooting` or `#viash-help` channels.
+If you encounter a problem, please read the [FAQ](/events/2021-09_neurips/documentation/submission/faq.qmd) to see whether a solution is already described. If you can't find a solution to your problem, please reach out on the competition [Discord](https://discord.gg/PEmRN4tjvE) server. See the `#troubleshooting` or `#viash-help` channels.

events/2021-09_neurips/documentation/submission/quickstart_saturncloud.qmd

@@ -134,4 +134,4 @@ Once your method is submitted, you can navigate to the [My Submissions](https://
 
 
 ## Encountering issues?
-If you encounter a problem, please read the [FAQ](/events/2021-09_neurips/documentation/submission/faq.qmd) to see whether a solution is already described. If you can't find a solution to your problem, please reach out on the competition [Discord](https://discord.gg/Q3RKGMGD3E) server. See the `#troubleshooting` or `#viash-help` channels.
+If you encounter a problem, please read the [FAQ](/events/2021-09_neurips/documentation/submission/faq.qmd) to see whether a solution is already described. If you can't find a solution to your problem, please reach out on the competition [Discord](https://discord.gg/PEmRN4tjvE) server. See the `#troubleshooting` or `#viash-help` channels.

events/2021-09_neurips/index.qmd

@@ -123,7 +123,7 @@ To get started:
 
 Full details about all the above can be found in the [Competition Documentation](/events/2021-09_neurips/documentation/index.qmd).
 
-If you ever have any questions, please feel free to reach out on the Open Problems [Discord Server](https://discord.gg/hDE5bYEcHF).
+If you ever have any questions, please feel free to reach out on the Open Problems [Discord Server](https://discord.gg/PEmRN4tjvE).
 
 If you'd like to get updates, please fill out the interest list below:
 

events/weekly_coworking/index.qmd

@@ -2,7 +2,7 @@
 title: "Weekly Co-working Meeting"
 subtitle: Recurring weekly co-working meeting on Discord
 description: |
-  [Join us on Discord](https://discord.gg/sDE7cM4PN7){class="btn btn-primary"}
+  [Join us on Discord](https://discord.gg/PEmRN4tjvE){class="btn btn-primary"}
 date: 2023-12-14
 start-date: "2023-09-11"
 end-date: "2024-12-31"