update results

Author: rcannood

results/cyto_batch_integration/data/dataset_info.json

@@ -6,7 +6,7 @@
     "dataset_description": "Flow cytometry data of spleens from 4 WT (IKK2 fl/fl CD11c-cre +/+) and 5 KO (IKK2 fl/fl CD11c-cre Tg/+) B6 mice,  measured with a 22-color panel on 2 different instrument settings. Subsampled to 1000 cells per sample. Data has been preprocessed (compensated witha batch-specific compensation matrix, logicle transformed, cleaned with PeacoQC and pregated on live single CD45+ cells).",
     "data_reference": "",
     "data_url": "",
-    "date_created": "12-03-2025",
+    "date_created": "19-03-2025",
     "file_size": 1444801
   }
 ]

results/cyto_batch_integration/data/method_info.json

@@ -11,9 +11,9 @@
     "code_url": "https://github.com/openproblems-bio/task_cyto_batch_integration",
     "documentation_url": null,
     "image": "https://ghcr.io/openproblems-bio/task_cyto_batch_integration/control_methods/shuffle_integration:build_main",
-    "implementation_url": "https://github.com/openproblems-bio/task_cyto_batch_integration/blob/818cd97980d3e08d36a079595f02bfb75dca71bd/src/control_methods/shuffle_integration",
+    "implementation_url": "https://github.com/openproblems-bio/task_cyto_batch_integration/blob/4ba62f679e8d99c5884bbc3f3f941654b076b4eb/src/control_methods/shuffle_integration",
     "code_version": "build_main",
-    "commit_sha": "818cd97980d3e08d36a079595f02bfb75dca71bd"
+    "commit_sha": "4ba62f679e8d99c5884bbc3f3f941654b076b4eb"
   },
   {
     "task_id": "control_methods",
@@ -27,9 +27,9 @@
     "code_url": "https://github.com/openproblems-bio/task_cyto_batch_integration",
     "documentation_url": null,
     "image": "https://ghcr.io/openproblems-bio/task_cyto_batch_integration/control_methods/shuffle_integration_by_batch:build_main",
-    "implementation_url": "https://github.com/openproblems-bio/task_cyto_batch_integration/blob/818cd97980d3e08d36a079595f02bfb75dca71bd/src/control_methods/shuffle_integration_by_batch",
+    "implementation_url": "https://github.com/openproblems-bio/task_cyto_batch_integration/blob/4ba62f679e8d99c5884bbc3f3f941654b076b4eb/src/control_methods/shuffle_integration_by_batch",
     "code_version": "build_main",
-    "commit_sha": "818cd97980d3e08d36a079595f02bfb75dca71bd"
+    "commit_sha": "4ba62f679e8d99c5884bbc3f3f941654b076b4eb"
   },
   {
     "task_id": "control_methods",
@@ -43,9 +43,9 @@
     "code_url": "https://github.com/openproblems-bio/task_cyto_batch_integration",
     "documentation_url": null,
     "image": "https://ghcr.io/openproblems-bio/task_cyto_batch_integration/control_methods/shuffle_integration_by_cell_type:build_main",
-    "implementation_url": "https://github.com/openproblems-bio/task_cyto_batch_integration/blob/818cd97980d3e08d36a079595f02bfb75dca71bd/src/control_methods/shuffle_integration_by_cell_type",
+    "implementation_url": "https://github.com/openproblems-bio/task_cyto_batch_integration/blob/4ba62f679e8d99c5884bbc3f3f941654b076b4eb/src/control_methods/shuffle_integration_by_cell_type",
     "code_version": "build_main",
-    "commit_sha": "818cd97980d3e08d36a079595f02bfb75dca71bd"
+    "commit_sha": "4ba62f679e8d99c5884bbc3f3f941654b076b4eb"
   },
   {
     "task_id": "methods",
@@ -59,9 +59,9 @@
     "code_url": "https://github.com/slowkow/harmonypy",
     "documentation_url": "https://portals.broadinstitute.org/harmony",
     "image": "https://ghcr.io/openproblems-bio/task_cyto_batch_integration/methods/harmonypy:build_main",
-    "implementation_url": "https://github.com/openproblems-bio/task_cyto_batch_integration/blob/818cd97980d3e08d36a079595f02bfb75dca71bd/src/methods/harmonypy",
+    "implementation_url": "https://github.com/openproblems-bio/task_cyto_batch_integration/blob/4ba62f679e8d99c5884bbc3f3f941654b076b4eb/src/methods/harmonypy",
     "code_version": "build_main",
-    "commit_sha": "818cd97980d3e08d36a079595f02bfb75dca71bd"
+    "commit_sha": "4ba62f679e8d99c5884bbc3f3f941654b076b4eb"
   },
   {
     "task_id": "methods",
@@ -75,9 +75,9 @@
     "code_url": "https://github.com/bioc/limma",
     "documentation_url": "https://bioinf.wehi.edu.au/limma",
     "image": "https://ghcr.io/openproblems-bio/task_cyto_batch_integration/methods/limma_remove_batch_effect:build_main",
-    "implementation_url": "https://github.com/openproblems-bio/task_cyto_batch_integration/blob/818cd97980d3e08d36a079595f02bfb75dca71bd/src/methods/limma_remove_batch_effect",
+    "implementation_url": "https://github.com/openproblems-bio/task_cyto_batch_integration/blob/4ba62f679e8d99c5884bbc3f3f941654b076b4eb/src/methods/limma_remove_batch_effect",
     "code_version": "build_main",
-    "commit_sha": "818cd97980d3e08d36a079595f02bfb75dca71bd"
+    "commit_sha": "4ba62f679e8d99c5884bbc3f3f941654b076b4eb"
   },
   {
     "task_id": "control_methods",
@@ -91,9 +91,9 @@
     "code_url": "https://github.com/openproblems-bio/task_cyto_batch_integration",
     "documentation_url": null,
     "image": "https://ghcr.io/openproblems-bio/task_cyto_batch_integration/control_methods/no_integration:build_main",
-    "implementation_url": "https://github.com/openproblems-bio/task_cyto_batch_integration/blob/818cd97980d3e08d36a079595f02bfb75dca71bd/src/control_methods/no_integration",
+    "implementation_url": "https://github.com/openproblems-bio/task_cyto_batch_integration/blob/4ba62f679e8d99c5884bbc3f3f941654b076b4eb/src/control_methods/no_integration",
     "code_version": "build_main",
-    "commit_sha": "818cd97980d3e08d36a079595f02bfb75dca71bd"
+    "commit_sha": "4ba62f679e8d99c5884bbc3f3f941654b076b4eb"
   },
   {
     "task_id": "control_methods",
@@ -107,9 +107,9 @@
     "code_url": "https://github.com/openproblems-bio/task_cyto_batch_integration",
     "documentation_url": null,
     "image": "https://ghcr.io/openproblems-bio/task_cyto_batch_integration/control_methods/perfect_integration:build_main",
-    "implementation_url": "https://github.com/openproblems-bio/task_cyto_batch_integration/blob/818cd97980d3e08d36a079595f02bfb75dca71bd/src/control_methods/perfect_integration",
+    "implementation_url": "https://github.com/openproblems-bio/task_cyto_batch_integration/blob/4ba62f679e8d99c5884bbc3f3f941654b076b4eb/src/control_methods/perfect_integration",
     "code_version": "build_main",
-    "commit_sha": "818cd97980d3e08d36a079595f02bfb75dca71bd"
+    "commit_sha": "4ba62f679e8d99c5884bbc3f3f941654b076b4eb"
   },
   {
     "task_id": "methods",
@@ -123,9 +123,9 @@
     "code_url": "https://github.com/brentp/combat.py",
     "documentation_url": "https://scanpy.readthedocs.io/en/latest/api/generated/scanpy.pp.combat.html",
     "image": "https://ghcr.io/openproblems-bio/task_cyto_batch_integration/methods/combat:build_main",
-    "implementation_url": "https://github.com/openproblems-bio/task_cyto_batch_integration/blob/818cd97980d3e08d36a079595f02bfb75dca71bd/src/methods/combat",
+    "implementation_url": "https://github.com/openproblems-bio/task_cyto_batch_integration/blob/4ba62f679e8d99c5884bbc3f3f941654b076b4eb/src/methods/combat",
     "code_version": "build_main",
-    "commit_sha": "818cd97980d3e08d36a079595f02bfb75dca71bd"
+    "commit_sha": "4ba62f679e8d99c5884bbc3f3f941654b076b4eb"
   },
   {
     "task_id": "methods",
@@ -139,8 +139,8 @@
     "code_url": "https://github.com/biosurf/cyCombine",
     "documentation_url": "https://biosurf.org/cyCombine.html",
     "image": "https://ghcr.io/openproblems-bio/task_cyto_batch_integration/methods/cycombine_nocontrols:build_main",
-    "implementation_url": "https://github.com/openproblems-bio/task_cyto_batch_integration/blob/818cd97980d3e08d36a079595f02bfb75dca71bd/src/methods/cycombine_nocontrols",
+    "implementation_url": "https://github.com/openproblems-bio/task_cyto_batch_integration/blob/4ba62f679e8d99c5884bbc3f3f941654b076b4eb/src/methods/cycombine_nocontrols",
     "code_version": "build_main",
-    "commit_sha": "818cd97980d3e08d36a079595f02bfb75dca71bd"
+    "commit_sha": "4ba62f679e8d99c5884bbc3f3f941654b076b4eb"
   }
 ]