Fixed Publications

Author: Gabriella Turek

Publications.md

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 # OpenSPIM publications
 
-Pitrone P. G., Schindelin J., Stuyvenberg L., Preibisch S., Weber M.;
-Eliceiri K. W., Huisken J., Tomancak P. (2013) **OpenSPIM: an open
-access light sheet microscopy platform** *Nat. Methods* in press
-[PDF](Media:Nmeth.2507.pdf "wikilink") doi: 10.1038/nmeth.2507,
-[Supplement](Media:Nmeth.2507-S1.pdf "wikilink"). See also the
-[directors' cut](http://arxiv.org/abs/1302.1987).
-
-Costa A., Candeo A., Fieramonti L., Valentini G., Bassi A. (2013)
-**Calcium Dynamics in Root Cells of Arabidopsis thaliana Visualized with
-Selective Plane Illumination Microscopy** [*PLoS
-ONE 8(10)*](http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0075646)
-<doi:10.1371/journal.pone.0075646>.
-
-Zhengyi Yang, Martynas Prokopas, Jonathan Nylk, Clara Coll-Lladó, Frank
-J. Gunn-Moore, David E. K. Ferrier, Tom Vettenburg, and Kishan Dholakia
-(2014), **A compact Airy beam light sheet microscope with a tilted
-cylindrical lens** [''Biomed. Opt.
-Express 5, 3434-3442](http://www.opticsinfobase.org/boe/abstract.cfm?URI=boe-5-10-3434)
-<doi:10.1364/BOE.5.003434>.
-
-Stephanie Höhn, Aurelia R. Honerkamp-Smith, Pierre A. Haas, Philipp Khuc
-Trong, and Raymond E. Goldstein (2015) '''Dynamics of a Volvox Embryo
-Turning Itself Inside Out ''' [*Physical Review
-Letters 114, 178101*](http://www.damtp.cam.ac.uk/user/gold/pdfs/inversion.pdf)
+Pitrone P. G., Schindelin J., Stuyvenberg L., Preibisch S., Weber M.; Eliceiri K. W., Huisken J., Tomancak P. (2013) **OpenSPIM: an open access light sheet microscopy platform** *Nat. Methods* in press [PDF](Media:Nmeth.2507.pdf "wikilink") doi: 10.1038/nmeth.2507, [Supplement](Media:Nmeth.2507-S1.pdf "wikilink"). See also the [directors' cut](https://arxiv.org/abs/1302.1987).
+
+Costa A., Candeo A., Fieramonti L., Valentini G., Bassi A. (2013) **Calcium Dynamics in Root Cells of Arabidopsis thaliana Visualized with Selective Plane Illumination Microscopy** [*PLoS ONE 8(10)*](https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0075646) <doi:10.1371/journal.pone.0075646>.
+
+Zhengyi Yang, Martynas Prokopas, Jonathan Nylk, Clara Coll-Lladó, Frank J. Gunn-Moore, David E. K. Ferrier, Tom Vettenburg, and Kishan Dholakia (2014), **A compact Airy beam light sheet microscope with a tilted cylindrical lens** [''Biomed. Opt. Express 5, 3434-3442](http://www.opticsinfobase.org/boe/abstract.cfm?URI=boe-5-10-3434) <doi:10.1364/BOE.5.003434>.
+
+Stephanie Höhn, Aurelia R. Honerkamp-Smith, Pierre A. Haas, Philipp Khuc Trong, and Raymond E. Goldstein (2015) '''Dynamics of a Volvox Embryo Turning Itself Inside Out ''' [*Physical Review Letters 114, 178101*](https://www.damtp.cam.ac.uk/user/gold/pdfs/inversion.pdf)
 
 # OpenSPIM-based setups
 
-Stefaniuk *et al* (2016) **Light-sheet microscopy imaging of a whole
-cleared rat brain with Thy1-GFP transgene** [*Scientific
-Reports*](http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4911560/) *doi:
-10.1038/srep28209*
+Stefaniuk *et al* (2016) **Light-sheet microscopy imaging of a whole cleared rat brain with Thy1-GFP transgene** [*Scientific Reports*](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4911560/) *doi: 10.1038/srep28209*
 
-Yang *et al* (2016) **A compact light-sheet microscope for the study of
-the mammalian central nervous system** [*Scientific
-Reports*](http://www.nature.com/articles/srep26317)
-*<doi:10.1038/srep26317>*
+Yang *et al* (2016) **A compact light-sheet microscope for the study of the mammalian central nervous system** [*Scientific Reports*](https://www.nature.com/articles/srep26317) *<doi:10.1038/srep26317>*
 
 # Related publications
 
-Gualda, E. J., Vale, T., Almada, P., Feijó, J. A., Martins, G. G., &
-Moreno, N. (2013). [**OpenSpinMicroscopy: an open-source integrated
-microscopy
-platform**](http://www.nature.com/nmeth/journal/v10/n7/full/nmeth.2508.html).
-Nature methods. doi: 10.1038/nmeth.2508
-
-Greger, K., Swoger, J., Stelzer, E. H. K. [**Basic building units and
-properties of a fluorescence single plane illumination
-microscope**](http://scitation.aip.org/content/aip/journal/rsi/78/2/10.1063/1.2428277)
-Rev. Sci. Instrum. 78, 023705 (2007);
-<http://dx.doi.org/10.1063/1.2428277> (a technical paper about SPIM
-containing a detailed description of the setup)
+Gualda, E. J., Vale, T., Almada, P., Feijó, J. A., Martins, G. G., & Moreno, N. (2013). [**OpenSpinMicroscopy: an open-source integrated microscopy platform**](https://www.nature.com/articles/nmeth.2508). Nature methods. doi: 10.1038/nmeth.2508
+
+Greger, K., Swoger, J., Stelzer, E. H. K. [**Basic building units and properties of a fluorescence single plane illumination microscope**](https://aip.scitation.org/doi/full/10.1063/1.2428277) Rev. Sci. Instrum. 78, 023705 (2007); (a technical paper about SPIM containing a detailed description of the setup)