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    622 repositories

    • aind-ibl-capsule-converter

      Public
      Python
      •0•0•0•0•Updated Apr 25, 2026Apr 25, 2026

    • aind-ephys-ibl-gui-conversion

      Public
      convert ephys data for use in ibl gui
      Python
      •
      MIT License
      •1•0•2•0•Updated Apr 25, 2026Apr 25, 2026

    • galen-uv-workflows

      Public
      Workflows using uv and commitizen to ci, tag, and publish python projects
      MIT License
      •0•0•0•0•Updated Apr 25, 2026Apr 25, 2026

    • GIAnT-MATLAB

      Public
      Glutamate Imaging Analysis Toolbox, MATLAB implementation
      0•0•0•0•Updated Apr 25, 2026Apr 25, 2026

    • posetail

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Apr 25, 2026Apr 25, 2026

    • Aind.Experiment.VrForaging-Fip

      Public
      A repository to run VrForaging + Fip experiments
      Python
      •
      MIT License
      •1•0•1•1•Updated Apr 25, 2026Apr 25, 2026

    • aind-ophys-motion-correction

      Public
      Python
      •
      MIT License
      •0•1•11•0•Updated Apr 25, 2026Apr 25, 2026

    • aind-metadata-viz

      Public
      Website for public metadata visualization
      Python
      •
      MIT License
      •1•0•3•1•Updated Apr 25, 2026Apr 25, 2026

    • Aind.Behavior.Device.Olfactometer

      Public
      A repository for calibration and configuration of the harp olfactometer device
      aind-behavior
      aind-behavior
      C#
      •
      MIT License
      •0•1•2•1•Updated Apr 25, 2026Apr 25, 2026

    • Aind.Behavior.VrForaging

      Public
      Task implemention of VR Foraging experiment
      aind-behavior
      aind-behavior
      C#
      •
      MIT License
      •0•3•8•1•Updated Apr 25, 2026Apr 25, 2026

    • zombie

      Public
      JavaScript
      •
      MIT License
      •1•0•7•1•Updated Apr 25, 2026Apr 25, 2026

    • rachel-analysis-utils

      Public
      rachel's analysis utils for AIND-analysis-framework instances.
      Python
      •
      MIT License
      •0•0•0•2•Updated Apr 25, 2026Apr 25, 2026

    • clabe

      Public
      Command-line-interface Launcher for AIND Behavior Experiments
      aind-behavior
      aind-behavior
      Python
      •
      MIT License
      •0•0•5•1•Updated Apr 25, 2026Apr 25, 2026

    • Rhapso

      Public
      An open-source Python toolkit for large-scale fluorescence microscopy data alignment and fusion.
      Python
      •
      MIT License
      •0•6•22•5•Updated Apr 24, 2026Apr 24, 2026

    • Aind.Behavior.VrForaging.Curricula

      Public
      A repository with curricula for the VrForaging platform
      Python
      •
      MIT License
      •0•1•1•0•Updated Apr 24, 2026Apr 24, 2026

    • hcr-integrated-qc-capsule

      Public
      Performs integrated quality control for a complete HCR experiment by combining ROI shape metrics, pairwise unmixing outputs, and cell typing results into a sing…
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Apr 24, 2026Apr 24, 2026

    • aind-pophys-pipeline

      Public
      2P planar optical physiology processing pipeline
      Nextflow
      •
      MIT License
      •0•0•4•1•Updated Apr 24, 2026Apr 24, 2026

    • mesoscale-cell-classification-head

      Public
      Cell classification head for mesoscale resolution using a 3D foundational image encoder
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 24, 2026Apr 24, 2026

    • harp.device.quad-dac

      Public
      0364: This repository contains the hardware, firmware, and software related to the Harp quad DAC
      harp
      harp
      C++
      •
      MIT License
      •0•0•31•2•Updated Apr 24, 2026Apr 24, 2026

    • aind-fip-dff

      Public
      This capsule takes an input raw NWB file of fiber data and creates processed DFF traces
      Python
      •
      MIT License
      •0•0•9•1•Updated Apr 24, 2026Apr 24, 2026

    • prototome-web-ui

      Public
      TypeScript
      •0•0•8•1•Updated Apr 24, 2026Apr 24, 2026

    • Aind.Behavior.Services

      Public
      A library for defining and maintaining behavior tasks.
      aind-behavior
      aind-behavior
      Python
      •
      MIT License
      •0•1•2•1•Updated Apr 24, 2026Apr 24, 2026

    • aind-docker-images

      Public
      aind-data-infrastructure
      aind-data-infrastructure
      Dockerfile
      •
      MIT License
      •0•0•0•2•Updated Apr 24, 2026Apr 24, 2026

    • neuron-proofreading-evaluation

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 24, 2026Apr 24, 2026

    • aind-metadata-upgrader

      Public
      Upgrade JSON metadata from old versions of aind-data-schema
      Python
      •
      MIT License
      •2•1•12•3•Updated Apr 24, 2026Apr 24, 2026

    • AutoTomeQC

      Public
      Automates sectioning quality control for the Prototome/Pylasso. Analyzes block face images to grade cuts (Go/No-Go/Unsure) based on knife marks, splits, thickne…
      sipe
      sipe
      Python
      •
      MIT License
      •0•0•3•1•Updated Apr 24, 2026Apr 24, 2026

    • .github

      Public
      0•0•4•7•Updated Apr 24, 2026Apr 24, 2026

    • brainwasher

      Public
      0354: control software for automated tissue clearing system
      Python
      •
      MIT License
      •1•0•18•2•Updated Apr 24, 2026Apr 24, 2026

    • openscope-community-predictive-processing

      Public
      This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project…
      Python
      •
      MIT License
      •13•18•32•0•Updated Apr 24, 2026Apr 24, 2026

    • aind-LC-morphologies_supplemental_figure

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Apr 24, 2026Apr 24, 2026
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