Repositories list

• big-data-biology_org

  Public
  Elm

  •2121 forks•00 stars•00 issues•22 pull requests•Updated Apr 26, 2026Apr 26, 2026

• argNorm

  Public
  ARG normalization by mapping to the ARO ontology.

  bioinformaticsantibiotic-resistance

  bioinformaticsantibiotic-resistance

  Python

  •

  MIT License

  •1010 forks•6565 stars•55 issues•00 pull requests•Updated Apr 25, 2026Apr 25, 2026

• SemiBin

  Public
  SemiBin: metagenomics binning with self-supervised deep learning

  bioinformaticsdeep-learningmetagenomics+ 2

  bioinformaticsdeep-learningmetagenomicsself-supervised-learningassembly-binning

  Python

  •

  MIT License

  •1717 forks•159159 stars•2929 issues•00 pull requests•Updated Apr 25, 2026Apr 25, 2026

• IndaDiaz2026__ARGTools

  Public
  ARG detection tools comparison

  UnrealScript

  •11 fork•00 stars•00 issues•00 pull requests•Updated Apr 24, 2026Apr 24, 2026

• Duan2026_urban_soil

  Public
  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 23, 2026Apr 23, 2026

• ShanghaiDogs

  Public
  Python

  •

  MIT License

  •22 forks•11 star•00 issues•00 pull requests•Updated Apr 23, 2026Apr 23, 2026

• magsview

  Public
  Elm

  •

  MIT License

  •22 forks•00 stars•00 issues•00 pull requests•Updated Apr 8, 2026Apr 8, 2026

• SPIREpy

  Public
  Python

  •

  MIT License

  •33 forks•00 stars•11 issue•00 pull requests•Updated Mar 24, 2026Mar 24, 2026

• GMSC-mapper

  Public
  bioinformaticsmicrobiomegmsc+ 1

  bioinformaticsmicrobiomegmscsmall-proteins

  Python

  •

  MIT License

  •66 forks•1212 stars•11 issue•11 pull request•Updated Mar 12, 2026Mar 12, 2026

• GMSC-api

  Public
  bioinformaticsgmscsmall-proteins

  bioinformaticsgmscsmall-proteins

  Python

  •22 forks•00 stars•00 issues•00 pull requests•Updated Mar 9, 2026Mar 9, 2026

• GMSC_website

  Public
  GMSC Frontend

  bioinformaticsmicrobiomegmsc+ 1

  bioinformaticsmicrobiomegmscsmall-proteins

  Bikeshed

  •

  MIT License

  •22 forks•00 stars•00 issues•00 pull requests•Updated Mar 8, 2026Mar 8, 2026

• urban-soil-magsview

  Public
  Elm

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 17, 2026Feb 17, 2026

• progenomes-cli

  Public
  Python

  •

  MIT License

  •11 fork•77 stars•44 issues•00 pull requests•Updated Nov 30, 2025Nov 30, 2025

• macrel

  Public
  Predict AMPs in (meta)genomes and peptides

  bioinformaticsgenomicsbiology+ 3

  bioinformaticsgenomicsbiologymetagenomicsnglesspeptide

  Python

  •

  Other

  •1313 forks•9191 stars•00 issues•00 pull requests•Updated Nov 24, 2025Nov 24, 2025

• AEMB_benchmark

  Public
  Python

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jul 22, 2025Jul 22, 2025

• sardyne

  Public
  Python

  •

  MIT License

  •11 fork•55 stars•00 issues•00 pull requests•Updated Jun 3, 2025Jun 3, 2025

• ENA_microbial_submission

  Public
  Set of scripts and instructions to upload sequencing reads to the ENA.

  Python

  •

  GNU General Public License v3.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated Apr 17, 2025Apr 17, 2025

• VideoTutorials

  Public
  Supporting material for YouTube tutorials

  pythonbioinformaticstutorials+ 1

  pythonbioinformaticstutorialsmicrobiome

  Python

  •11 fork•11 star•00 issues•00 pull requests•Updated Mar 17, 2025Mar 17, 2025

• argNorm_benchmark

  Public
  Benchmark repo for argNorm

  Python

  •22 forks•22 stars•00 issues•22 pull requests•Updated Mar 5, 2025Mar 5, 2025

• SantosJunior_Torres_2024_AMPSphere_v1

  Public
  Figures and files used in the AMPSphere manuscript

  Python

  •

  MIT License

  •33 forks•55 stars•00 issues•00 pull requests•Updated Jan 2, 2025Jan 2, 2025

• AMPSphereFrontend

  Public
  Bikeshed

  •44 forks•11 star•00 issues•00 pull requests•Updated Sep 21, 2024Sep 21, 2024

• Duan2024__GMSCv1_Construction_And_Analysis

  Public
  Jupyter Notebook

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jul 28, 2024Jul 28, 2024

• AMPSphereBackend

  Public
  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 28, 2024Jun 28, 2024

• BigDataBiology.markdown_manuscript

  Public
  Simple template for BDB-Lab manuscripts

  TeX

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated May 28, 2024May 28, 2024

• talk-tips-n-tricks-large-python

  Public
  Tips & tricks for large scale processing with Python

  HTML

  •55 forks•11 star•00 issues•00 pull requests•Updated May 8, 2024May 8, 2024

• co-args

  Public
  Python

  •

  MIT License

  •00 forks•44 stars•00 issues•00 pull requests•Updated Apr 30, 2024Apr 30, 2024

• SemiBin_tutorial

  Public
  22 forks•22 stars•00 issues•00 pull requests•Updated Apr 19, 2024Apr 19, 2024

• long-read-magic

  Public
  A website to visualise and download MAGs obtained from long read sequencing.

  BrighterScript

  •

  Other

  •66 forks•00 stars•00 issues•00 pull requests•Updated Mar 25, 2024Mar 25, 2024

• SemiBin_benchmark

  Public
  Python

  •

  MIT License

  •22 forks•33 stars•00 issues•00 pull requests•Updated Mar 21, 2024Mar 21, 2024

• SemiBin2_benchmark

  Public
  Python

  •

  MIT License

  •00 forks•66 stars•00 issues•00 pull requests•Updated Mar 21, 2024Mar 21, 2024