All

17 repositories

preprocessing
Public
preprocessing tools for multi-modal 3D brain imaging
mri multi-modal brain
mri multi-modal brain normalization brain-extraction co-registration skullstripping
C
•
Apache License 2.0
•8•31•11•2•Updated Apr 24, 2026Apr 24, 2026
panoptica
Public
panoptica -- instance-wise evaluation of 3D semantic and instance segmentation maps
semantic metrics evaluation
semantic metrics evaluation segmentation instance 3d panoptic instance-wise
Python
•
Apache License 2.0
•9•29•29•2•Updated Apr 22, 2026Apr 22, 2026
BraTS
Public
Providing top-performing algorithms from the Brain Tumor Segmentation (BraTS) challenges.
tumor mri synthesis
tumor mri synthesis segmentation brain inpainting lesion
Python
•
Apache License 2.0
•16•67•7•1•Updated Mar 16, 2026Mar 16, 2026
PredictGBM
Public
Tools for image processing, brain segmentation and evaluation of glioblastoma growth models
mri brain medical-image-processing
mri brain medical-image-processing glioblastoma
Python
•
Apache License 2.0
•2•7•0•1•Updated Mar 4, 2026Mar 4, 2026
auxiliary
Public
helpful functions for handling biomedical-imaging data in DICOM or NIfTI format
dicom mri nifti
dicom mri nifti
Python
•
Apache License 2.0
•3•2•1•0•Updated Dec 10, 2025Dec 10, 2025
GlioMODA
Public
multi-modal MRI BraTS glioma segmentation for various sequence combinations
segmentation brain brats
segmentation brain brats glioma
Python
•1•7•1•0•Updated Nov 29, 2025Nov 29, 2025
PeTu
Public
pediatric brain tumor segmentation models
tumor mri segmentation
tumor mri segmentation pediatric brain
Python
•1•6•2•0•Updated Nov 10, 2025Nov 10, 2025
.github
Public
Apache License 2.0
•2•1•0•1•Updated Sep 13, 2025Sep 13, 2025
stroke_segmentor
Public
stroke segmentation in MRI data
mri segmentation stroke
mri segmentation stroke
Python
•0•2•1•0•Updated Sep 4, 2025Sep 4, 2025
tutorials
Public
BrainLes tutotrials
pipelines mri brain
pipelines mri brain pathology
Jupyter Notebook
•
Apache License 2.0
•2•11•5•0•Updated Jul 25, 2025Jul 25, 2025
AURORA
Public
Segmentation models for cancer metastasis in brain MR
mri segmentation metastasis
mri segmentation metastasis
Python
•
Apache License 2.0
•2•10•1•0•Updated Jun 10, 2025Jun 10, 2025
modsort
Public
manual sorting GUI for identifying multi-modal MR sequences
mri identification sequence
mri identification sequence mr modality
Vue
•
Apache License 2.0
•0•5•1•0•Updated Apr 22, 2025Apr 22, 2025
HD-BET
Public
Python
•
Apache License 2.0
•1•1•0•0•Updated Apr 17, 2025Apr 17, 2025
brainles-template
Public template
Template for new BrainLes repositories
Python
•1•0•0•0•Updated Apr 16, 2025Apr 16, 2025
deep_quality_estimation
Public
Quality estimation for BraTS glioma segmentation models
mri segmentation brain
mri segmentation brain glioma
Python
•0•4•0•0•Updated Nov 27, 2024Nov 27, 2024
eReg
Public archive
TODO
Python
•
Apache License 2.0
•0•1•6•0•Updated Apr 16, 2024Apr 16, 2024
BrainLes
Public
0•0•0•0•Updated Mar 7, 2024Mar 7, 2024

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BrainLesion Suite

All

All

17 repositories

preprocessing

panoptica

BraTS

PredictGBM

auxiliary

GlioMODA

PeTu

.github

stroke_segmentor

tutorials

AURORA

modsort

HD-BET

brainles-template

deep_quality_estimation

eReg

BrainLes

All

All

Repositories list

17 repositories