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    • cg

      Public
      Glue between Clinical Genomics apps
      Python
      31110638Updated Apr 24, 2026Apr 24, 2026
    • scout

      Public
      VCF visualization interface
      HTML
      BSD 3-Clause "New" or "Revised" License
      501782294Updated Apr 24, 2026Apr 24, 2026
    • Repo for secondary layer of WGS cancer analyses
      Nextflow
      MIT License
      1062Updated Apr 24, 2026Apr 24, 2026
    • microSALT

      Public
      Microbial Sequence Analysis and Loci-based Typing pipeline for use on NGS WGS data.
      Python
      GNU General Public License v3.0
      33173Updated Apr 24, 2026Apr 24, 2026
    • rdds

      Public
      Rare Disease Data Science & ML
      Jupyter Notebook
      Apache License 2.0
      001113Updated Apr 24, 2026Apr 24, 2026
    • stranger

      Public
      Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat
      Python
      MIT License
      74160Updated Apr 22, 2026Apr 22, 2026
    • Frontend app for Statina
      TypeScript
      0033Updated Apr 22, 2026Apr 22, 2026
    • Repository to host automated bump2version CI to run on python repositories
      Shell
      0041Updated Apr 18, 2026Apr 18, 2026
    • statina

      Public
      Python
      32180Updated Apr 17, 2026Apr 17, 2026
    • hermes

      Public
      Communication layer between CG and the pipelines.
      Python
      0164Updated Apr 15, 2026Apr 15, 2026
    • BALSAMIC

      Public
      Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
      Python
      MIT License
      15588511Updated Apr 13, 2026Apr 13, 2026
    • A MatchMaker Exchange server
      Python
      MIT License
      71260Updated Apr 13, 2026Apr 13, 2026
    • Test data to be used for automated testing with the nf-core pipelines
      MIT License
      497000Updated Apr 13, 2026Apr 13, 2026
    • Keep track of and manage analyses
      Python
      MIT License
      2674Updated Apr 1, 2026Apr 1, 2026
    • fluffy

      Public
      FetaL AneUploidy and FetalFraction analYsis Pipeline
      Python
      9400Updated Mar 30, 2026Mar 30, 2026
    • genmod

      Public
      Annotate models of genetic inheritance patterns in variant files (vcf files)
      Python
      MIT License
      2189254Updated Mar 27, 2026Mar 27, 2026
    • Chaining wrapper between taxprofiler and metaval
      0001Updated Mar 27, 2026Mar 27, 2026
    • Small reference files
      Lua
      26101Updated Mar 25, 2026Mar 25, 2026
    • File data orchestrator
      Python
      MIT License
      0230Updated Mar 23, 2026Mar 23, 2026
    • meatballs

      Public
      An open source recipe book from the awesome staff of Clinical Genomics
      Python
      MIT License
      12431Updated Mar 11, 2026Mar 11, 2026
    • A ClinVar API submission helper written in FastAPI
      Python
      MIT License
      0190Updated Mar 10, 2026Mar 10, 2026
    • A proof of concept daisy-chaining Nextflow workflows
      Nextflow
      11000Updated Mar 10, 2026Mar 10, 2026
    • Paraphase JSON parser
      Python
      MIT License
      0100Updated Mar 10, 2026Mar 10, 2026
    • gens

      Public
      JavaScript
      Mozilla Public License 2.0
      91101Updated Mar 3, 2026Mar 3, 2026
    • CG's rare disease pipeline in next flow, see the main repo here 👇
      Nextflow
      MIT License
      636161Updated Mar 2, 2026Mar 2, 2026
    • Scripts to run mutacc import functionality automatically
      Python
      0000Updated Feb 10, 2026Feb 10, 2026
    • chanjo

      Public
      Chanjo provides a better way to analyze coverage data in clinical sequencing.
      Python
      MIT License
      1250312Updated Feb 9, 2026Feb 9, 2026
    • loqusdb

      Public
      A simple observation count database
      Python
      MIT License
      911207Updated Jan 13, 2026Jan 13, 2026
    • Rewrite of genotype package
      Python
      10151Updated Dec 29, 2025Dec 29, 2025
    • chanjo2

      Public
      Persistent coverage analysis tool using the d4 format
      Python
      MIT License
      03150Updated Dec 9, 2025Dec 9, 2025
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