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    26 repositories

    • multistain_cyclegan_normalization

      Public
      Implementation of MultiStain-CycleGAN
      normalizationcyclegan-pytorchstain
      normalizationcyclegan-pytorchstainhistopathology-image-analysis
      Python
      •
      Other
      •0•11•0•0•Updated Jan 8, 2026Jan 8, 2026

    • expert_informed_derma_classification

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Oct 22, 2025Oct 22, 2025

    • expert_informed_histo_classification

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Oct 22, 2025Oct 22, 2025

    • UroBot

      Public
      Urology-informed Large Language Model
      Python
      •
      MIT License
      •3•5•1•0•Updated Aug 21, 2025Aug 21, 2025

    • Derma-XAI

      Public
      Jupyter Notebook
      •1•0•0•0•Updated Aug 11, 2025Aug 11, 2025

    • GleasonXAI

      Public
      Explainable Gleason pattern prediction.
      Jupyter Notebook
      •
      MIT License
      •3•9•1•1•Updated Jun 10, 2025Jun 10, 2025

    • EyeTracking

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Mar 19, 2025Mar 19, 2025

    • wsi_preprocessing

      Public
      Python script to do tiling and basic filtering of histological slides
      Python
      •3•10•3•0•Updated Feb 27, 2024Feb 27, 2024

    • slide_tools

      Public
      A collection of useful tools to handle WSIs
      Jupyter Notebook
      •1•2•5•0•Updated Jan 19, 2024Jan 19, 2024

    • ssl-wsi

      Public
      Self-supervised learning on WSI
      Python
      •
      MIT License
      •0•1•0•0•Updated Jan 19, 2024Jan 19, 2024

    • ovar-hrd

      Public
      Python
      •0•1•0•0•Updated Dec 20, 2023Dec 20, 2023

    • wsi_preprocessing-crc

      Public
      Python script to do tiling and basic filtering of histological slides
      Python
      •3•0•2•0•Updated Dec 13, 2023Dec 13, 2023

    • wsi-calib

      Public
      Evaluating calibration for WSI classification
      Python
      •0•0•0•0•Updated Dec 1, 2023Dec 1, 2023

    • uncertainty-benchmark

      Public
      Jupyter Notebook
      •1•5•3•0•Updated Nov 15, 2023Nov 15, 2023

    • CRC_DL_Survival_Curves

      Public
      Python
      •1•1•0•0•Updated Jul 28, 2023Jul 28, 2023

    • 3d-histo

      Public
      Scripts for 3d reconstruction from histological slices
      Python
      •0•3•0•0•Updated Jul 17, 2023Jul 17, 2023

    • CRC_Outcome

      Public
      0•0•0•0•Updated Jun 29, 2023Jun 29, 2023

    • niivue-ui-fork

      Public
      The React Material UI interface for NiiVue
      JavaScript
      •
      BSD 2-Clause "Simplified" License
      •10•0•0•0•Updated Jun 21, 2023Jun 21, 2023

    • federated_histo

      Public
      Python
      •0•0•0•0•Updated May 11, 2023May 11, 2023

    • fl_jama

      Public
      Python
      •0•0•0•0•Updated May 9, 2023May 9, 2023

    • SCP-CytoBrowser

      Public
      CytoBrowser, a JavaScript and Node.js driven environment for fast and accessible collaborative online visualization, assessment, and annotation of very large mi…
      JavaScript
      •
      GNU General Public License v3.0
      •10•0•0•0•Updated Nov 22, 2022Nov 22, 2022

    • SCP-Code

      Public
      General code used throughout the SCP project
      Jupyter Notebook
      •
      Apache License 2.0
      •0•1•0•0•Updated Apr 5, 2022Apr 5, 2022

    • PEAIP

      Public
      Everything related to the PEAIP project
      JavaScript
      •1•1•0•0•Updated Feb 28, 2022Feb 28, 2022

    • crc-lnm

      Public
      Prediction of lymph node status from routine histological slides of colorectal cancer using deep learning
      Python
      •1•1•0•0•Updated Oct 18, 2021Oct 18, 2021

    • SCP-Robustness-Benchmark

      Public
      A Benchmark for Convolutional Neural Network Robustness in Skin Cancer Classification
      Jupyter Notebook
      •0•3•0•0•Updated Aug 5, 2021Aug 5, 2021

    • PatientDataIntegration

      Public
      Jupyter Notebook
      •1•4•0•0•Updated Feb 10, 2021Feb 10, 2021
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