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    • kenetre

      Public
      Java
      Other
      1001Updated Apr 21, 2026Apr 21, 2026
    • toulligQC

      Public
      A post sequencing QC tool for Oxford Nanopore sequencers
      JavaScript
      Other
      1111050Updated Apr 20, 2026Apr 20, 2026
    • eoulsan

      Public
      A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)
      Java
      Other
      115507Updated Mar 31, 2026Mar 31, 2026
    • Additional formats and Galaxy tool files for Eoulsan
      Apache License 2.0
      2200Updated Mar 26, 2026Mar 26, 2026
    • Groovy
      Other
      5800Updated Mar 5, 2026Mar 5, 2026
    • HTML
      GNU Lesser General Public License v2.1
      4800Updated Feb 10, 2026Feb 10, 2026
    • egzotek

      Public
      A transcript annotation for incomplete or poorly annotated genomes using nanopore reads
      Nextflow
      GNU General Public License v3.0
      1200Updated Sep 23, 2025Sep 23, 2025
    • aozan

      Public
      An automated post sequencing data processing pipeline for Illumina HiSeq
      HTML
      Other
      414311Updated Aug 28, 2025Aug 28, 2025
    • AsaruSim

      Public
      10X single cell Nanopore reads simulation workflow. Complete documentation avialable at: https://GenomiqueENS.github.io/AsaruSim/
      Python
      GNU General Public License v3.0
      21300Updated Jul 27, 2025Jul 27, 2025
    • HTML
      1200Updated May 30, 2024May 30, 2024
    • Nextflow
      MIT License
      0000Updated Jan 22, 2024Jan 22, 2024
    • snuupy

      Public
      single-nucleus nanopore reads processing pipeline
      Python
      6000Updated Jun 20, 2022Jun 20, 2022
    • Dockerfile
      238200Updated Feb 22, 2022Feb 22, 2022
    • toullig

      Public
      Java
      Other
      0100Updated Sep 11, 2018Sep 11, 2018
    • Conda recipes for the bioconda channel.
      Shell
      3.9k000Updated Nov 27, 2017Nov 27, 2017
    • Python
      0000Updated May 16, 2017May 16, 2017
    • Shell
      2300Updated Aug 18, 2016Aug 18, 2016
    • nividic

      Public
      A microarray toolkit
      Java
      GNU Lesser General Public License v2.1
      0000Updated Mar 19, 2015Mar 19, 2015
    • doelan

      Public
      An automated tool to check the quality of produced DNA microarrays
      Java
      GNU General Public License v2.0
      0000Updated Mar 19, 2015Mar 19, 2015
    • corsen

      Public
      Corsen is a tool dedicated to 3D distances measurements developed to access the minimal distance between cellular objects
      Java
      GNU General Public License v2.0
      0000Updated Mar 19, 2015Mar 19, 2015
    • teolenn

      Public
      A high-quality prode design workflow for microarrays
      Java
      GNU General Public License v2.0
      0000Updated Mar 19, 2015Mar 19, 2015
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