Repositories list

• kenetre

  Public
  Java

  •

  Other

  •11 fork•00 stars•00 issues•11 pull request•Updated Apr 21, 2026Apr 21, 2026

• toulligQC

  Public
  A post sequencing QC tool for Oxford Nanopore sequencers

  JavaScript

  •

  Other

  •1111 forks•110110 stars•55 issues•00 pull requests•Updated Apr 20, 2026Apr 20, 2026

• eoulsan

  Public
  A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)

  javarna-seqanalysis+ 3

  javarna-seqanalysisworkflow-enginebioinformatics-pipelinecloud-computing-clusters

  Java

  •

  Other

  •1111 forks•5555 stars•00 issues•77 pull requests•Updated Mar 31, 2026Mar 31, 2026

• eoulsan-tools

  Public
  Additional formats and Galaxy tool files for Eoulsan

  Apache License 2.0

  •22 forks•22 stars•00 issues•00 pull requests•Updated Mar 26, 2026Mar 26, 2026

• wf-toulligqc

  Public
  Groovy

  •

  Other

  •55 forks•88 stars•00 issues•00 pull requests•Updated Mar 5, 2026Mar 5, 2026

• easy-contrasts-DESeq2

  Public
  HTML

  •

  GNU Lesser General Public License v2.1

  •44 forks•88 stars•00 issues•00 pull requests•Updated Feb 10, 2026Feb 10, 2026

• egzotek

  Public
  A transcript annotation for incomplete or poorly annotated genomes using nanopore reads

  bioinformatics-pipelinenextflow-pipeline

  bioinformatics-pipelinenextflow-pipeline

  Nextflow

  •

  GNU General Public License v3.0

  •11 fork•22 stars•00 issues•00 pull requests•Updated Sep 23, 2025Sep 23, 2025

• aozan

  Public
  An automated post sequencing data processing pipeline for Illumina HiSeq

  HTML

  •

  Other

  •44 forks•1414 stars•33 issues•1111 pull requests•Updated Aug 28, 2025Aug 28, 2025

• AsaruSim

  Public
  10X single cell Nanopore reads simulation workflow. Complete documentation avialable at: https://GenomiqueENS.github.io/AsaruSim/

  simulatornanoporenextflow+ 3

  simulatornanoporenextflowsingle-celllongreadsplicing

  Python

  •

  GNU General Public License v3.0

  •22 forks•1313 stars•00 issues•00 pull requests•Updated Jul 27, 2025Jul 27, 2025

• formationONT

  Public
  HTML

  •11 fork•22 stars•00 issues•00 pull requests•Updated May 30, 2024May 30, 2024

• nf-workflows

  Public
  Nextflow

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 22, 2024Jan 22, 2024

• snuupy

  Public
  single-nucleus nanopore reads processing pipeline

  Python

  •66 forks•00 stars•00 issues•00 pull requests•Updated Jun 20, 2022Jun 20, 2022

• dockerfiles

  Public
  Dockerfile

  •2323 forks•8282 stars•00 issues•00 pull requests•Updated Feb 22, 2022Feb 22, 2022

• toullig

  Public
  Java

  •

  Other

  •00 forks•11 star•00 issues•00 pull requests•Updated Sep 11, 2018Sep 11, 2018

• bioconda-recipes

  Public
  Conda recipes for the bioconda channel.

  Shell

  •3.9k3.9k forks•00 stars•00 issues•00 pull requests•Updated Nov 27, 2017Nov 27, 2017

• ValidAnnot

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 16, 2017May 16, 2017

• riboproanalysis

  Public
  Shell

  •22 forks•33 stars•00 issues•00 pull requests•Updated Aug 18, 2016Aug 18, 2016

• nividic

  Public
  A microarray toolkit

  Java

  •

  GNU Lesser General Public License v2.1

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 19, 2015Mar 19, 2015

• doelan

  Public
  An automated tool to check the quality of produced DNA microarrays

  Java

  •

  GNU General Public License v2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 19, 2015Mar 19, 2015

• corsen

  Public
  Corsen is a tool dedicated to 3D distances measurements developed to access the minimal distance between cellular objects

  Java

  •

  GNU General Public License v2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 19, 2015Mar 19, 2015

• teolenn

  Public
  A high-quality prode design workflow for microarrays

  Java

  •

  GNU General Public License v2.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 19, 2015Mar 19, 2015